FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6912, 218 aa
  1>>>pF1KB6912 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2236+/-0.000695; mu= 14.5711+/- 0.042
 mean_var=63.9885+/-12.662, 0's: 0 Z-trim(109.9): 11  B-trim: 13 in 1/49
 Lambda= 0.160333
 statistics sampled from 11231 (11237) to 11231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.345), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS10444.1 MRPS34 gene_id:65993|Hs108|chr16       ( 218) 1498 354.5 2.9e-98
CCDS73805.1 MRPS34 gene_id:65993|Hs108|chr16       ( 225) 1474 349.0 1.4e-96


>>CCDS10444.1 MRPS34 gene_id:65993|Hs108|chr16            (218 aa)
 initn: 1498 init1: 1498 opt: 1498  Z-score: 1877.6  bits: 354.5 E(32554): 2.9e-98
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB6 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
              130       140       150       160       170       180

              190       200       210        
pF1KB6 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
       ::::::::::::::::::::::::::::::::::::::
CCDS10 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
              190       200       210        

>>CCDS73805.1 MRPS34 gene_id:65993|Hs108|chr16            (225 aa)
 initn: 840 init1: 840 opt: 1474  Z-score: 1847.4  bits: 349.0 E(32554): 1.4e-96
Smith-Waterman score: 1474; 96.9% identity (96.9% similar) in 225 aa overlap (1-218:1-225)

               10        20        30        40        50        60
pF1KB6 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
               70        80        90       100       110       120

                     130       140       150       160       170   
pF1KB6 K-------GKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAM
       :       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KDASFSSSGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAM
              130       140       150       160       170       180

           180       190       200       210        
pF1KB6 IIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
              190       200       210       220     




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:19:23 2016 done: Sat Nov  5 14:19:23 2016
 Total Scan time:  1.910 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]