Result of FASTA (omim) for pF1KB6892
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6892, 202 aa
  1>>>pF1KB6892 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4538+/-0.000329; mu= -8.3314+/- 0.021
 mean_var=335.4084+/-68.621, 0's: 0 Z-trim(126.1): 27  B-trim: 1650 in 1/58
 Lambda= 0.070031
 statistics sampled from 51337 (51369) to 51337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.602), width:  16
 Scan time:  7.770

The best scores are:                                      opt bits E(85289)
NP_000942 (OMIM: 604429) transmembrane gamma-carbo ( 202) 1441 157.7 1.2e-38
XP_006723349 (OMIM: 604429) PREDICTED: transmembra ( 202) 1441 157.7 1.2e-38
XP_011525426 (OMIM: 604429) PREDICTED: transmembra ( 179) 1256 139.0 4.5e-33
NP_001303264 (OMIM: 604429) transmembrane gamma-ca ( 179) 1256 139.0 4.5e-33
NP_076986 (OMIM: 611690) transmembrane gamma-carbo ( 226)  299 42.4 0.00069
XP_006718377 (OMIM: 611690) PREDICTED: transmembra ( 226)  299 42.4 0.00069
XP_016873764 (OMIM: 611690) PREDICTED: transmembra ( 364)  299 42.6 0.00097


>>NP_000942 (OMIM: 604429) transmembrane gamma-carboxygl  (202 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 815.0  bits: 157.7 E(85289): 1.2e-38
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
              130       140       150       160       170       180

              190       200  
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
       ::::::::::::::::::::::
NP_000 ALAASGVHDAPPPPYTSLRRPH
              190       200  

>>XP_006723349 (OMIM: 604429) PREDICTED: transmembrane g  (202 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 815.0  bits: 157.7 E(85289): 1.2e-38
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
              130       140       150       160       170       180

              190       200  
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
       ::::::::::::::::::::::
XP_006 ALAASGVHDAPPPPYTSLRRPH
              190       200  

>>XP_011525426 (OMIM: 604429) PREDICTED: transmembrane g  (179 aa)
 initn: 1256 init1: 1256 opt: 1256  Z-score: 714.7  bits: 139.0 E(85289): 4.5e-33
Smith-Waterman score: 1256; 100.0% identity (100.0% similar) in 174 aa overlap (29-202:6-179)

               10        20        30        40        50        60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
                                   ::::::::::::::::::::::::::::::::
XP_011                        MSLGPEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
                                      10        20        30       

               70        80        90       100       110       120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
        40        50        60        70        80        90       

              130       140       150       160       170       180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       100       110       120       130       140       150       

              190       200  
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
       ::::::::::::::::::::::
XP_011 ALAASGVHDAPPPPYTSLRRPH
       160       170         

>>NP_001303264 (OMIM: 604429) transmembrane gamma-carbox  (179 aa)
 initn: 1256 init1: 1256 opt: 1256  Z-score: 714.7  bits: 139.0 E(85289): 4.5e-33
Smith-Waterman score: 1256; 100.0% identity (100.0% similar) in 174 aa overlap (29-202:6-179)

               10        20        30        40        50        60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
                                   ::::::::::::::::::::::::::::::::
NP_001                        MSLGPEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
                                      10        20        30       

               70        80        90       100       110       120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
        40        50        60        70        80        90       

              130       140       150       160       170       180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
       100       110       120       130       140       150       

              190       200  
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
       ::::::::::::::::::::::
NP_001 ALAASGVHDAPPPPYTSLRRPH
       160       170         

>>NP_076986 (OMIM: 611690) transmembrane gamma-carboxygl  (226 aa)
 initn: 310 init1: 193 opt: 299  Z-score: 190.8  bits: 42.4 E(85289): 0.00069
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:28-207)

                    10        20        30        40        50     
pF1KB6      MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDL
                                  :... .::: .  ::. :.  : :.   :..::
NP_076 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNRFDL
               10        20        30        40          50        

          60        70        80        90            100       110
pF1KB6 ELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDVASL
       ::.::::::::: :: :..::::: : :.  :  ::. :  .:      :.: ..:: .:
NP_076 ELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGL
        60        70        80        90       100       110       

               120       130       140          150       160      
pF1KB6 AVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPTPLP
        .:: ..:..:.... :: .  .  . .: :.:: .   : :  .: : .      . : 
NP_076 LTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEAALS
       120       130       140        150       160        170     

        170         180        190       200              
pF1KB6 PPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH            
       : ::     :::.::::.: .  :. .:::::                   
NP_076 PLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
         180       190       200       210       220      

>>XP_006718377 (OMIM: 611690) PREDICTED: transmembrane g  (226 aa)
 initn: 310 init1: 193 opt: 299  Z-score: 190.8  bits: 42.4 E(85289): 0.00069
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:28-207)

                    10        20        30        40        50     
pF1KB6      MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDL
                                  :... .::: .  ::. :.  : :.   :..::
XP_006 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNRFDL
               10        20        30        40          50        

          60        70        80        90            100       110
pF1KB6 ELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDVASL
       ::.::::::::: :: :..::::: : :.  :  ::. :  .:      :.: ..:: .:
XP_006 ELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGL
        60        70        80        90       100       110       

               120       130       140          150       160      
pF1KB6 AVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPTPLP
        .:: ..:..:.... :: .  .  . .: :.:: .   : :  .: : .      . : 
XP_006 LTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEAALS
       120       130       140        150       160        170     

        170         180        190       200              
pF1KB6 PPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH            
       : ::     :::.::::.: .  :. .:::::                   
XP_006 PLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
         180       190       200       210       220      

>>XP_016873764 (OMIM: 611690) PREDICTED: transmembrane g  (364 aa)
 initn: 310 init1: 193 opt: 299  Z-score: 188.1  bits: 42.6 E(85289): 0.00097
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:166-345)

                       10        20        30        40        50  
pF1KB6         MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANH
                                     :... .::: .  ::. :.  : :.   :.
XP_016 CQTMFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNR
         140       150       160       170       180          190  

             60        70        80        90            100       
pF1KB6 WDLELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDV
       .::::.::::::::: :: :..::::: : :.  :  ::. :  .:      :.: ..::
XP_016 FDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDV
            200       210       220       230       240       250  

       110        120       130       140          150       160   
pF1KB6 ASLAVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPT
        .: .:: ..:..:.... :: .  .  . .: :.:: .   : :  .: : .      .
XP_016 MGLLTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEA
            260       270        280       290       300        310

           170         180        190       200              
pF1KB6 PLPPPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH            
        : : ::     :::.::::.: .  :. .:::::                   
XP_016 ALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
              320       330       340       350       360    




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:08:24 2016 done: Sat Nov  5 14:08:25 2016
 Total Scan time:  7.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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