Result of FASTA (omim) for pF1KB6805
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6805, 159 aa
  1>>>pF1KB6805 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8419+/-0.000353; mu= 14.3918+/- 0.022
 mean_var=55.7960+/-11.323, 0's: 0 Z-trim(113.3): 12  B-trim: 1211 in 1/47
 Lambda= 0.171701
 statistics sampled from 22612 (22624) to 22612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.265), width:  16
 Scan time:  4.590

The best scores are:                                      opt bits E(85289)
XP_011530227 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_006714274 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_006714275 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_011530228 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
NP_653247 (OMIM: 147790) immunoglobulin J chain pr ( 159) 1070 272.8 1.7e-73


>>XP_011530227 (OMIM: 147790) PREDICTED: immunoglobulin   (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1440.7  bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
XP_011 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         

>>XP_006714274 (OMIM: 147790) PREDICTED: immunoglobulin   (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1440.7  bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
XP_006 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         

>>XP_006714275 (OMIM: 147790) PREDICTED: immunoglobulin   (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1440.7  bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
XP_006 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         

>>XP_011530228 (OMIM: 147790) PREDICTED: immunoglobulin   (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1440.7  bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
XP_011 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         

>>NP_653247 (OMIM: 147790) immunoglobulin J chain precur  (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1440.7  bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
NP_653 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         




159 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:04:08 2016 done: Sat Nov  5 14:04:09 2016
 Total Scan time:  4.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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