GENSCAN 1.0	Date run:  5-Nov-116	Time: 13:43:27

Sequence gi568815595r:128520414_128750800 : 230387 bp : 47.82% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1528   1560   33  0  0   84   87    16 0.531   0.98
 1.02 Intr +   2705   2875  171  1  0   99   69    41 0.721   3.44
 1.03 Term +   2950   3090  141  0  0  130   55    41 0.713   2.93
 1.04 PlyA +   4562   4567    6                               1.05

 2.00 Prom +  10643  10682   40                              -7.16
 2.01 Init +  13705  13863  159  0  0   86   88    64 0.440   6.02
 2.02 Term +  17688  17885  198  2  0   23   34   290 0.972  14.50
 2.03 PlyA +  18874  18879    6                               1.05

 3.04 PlyA -  19196  19191    6                               1.05
 3.03 Term -  20802  20629  174  0  0   76   44    69 0.220  -0.94
 3.02 Intr -  26420  26266  155  0  2   31   96    82 0.258   3.09
 3.01 Init -  27254  27182   73  2  1  104   17   130 0.316   6.73
 3.00 Prom -  28808  28769   40                              -5.96

 4.15 PlyA -  32723  32718    6                               1.05
 4.14 Term -  34856  34788   69  2  0   92   52    59 0.747   0.64
 4.13 Intr -  35381  35320   62  0  2  110   90    58 0.801   6.65
 4.12 Intr -  35636  35500  137  1  2   31   80    77 0.523   1.41
 4.11 Intr -  38100  37996  105  2  0   18   91    77 0.241   0.33
 4.10 Intr -  42906  42805  102  2  0   74   66    46 0.051   0.29
 4.09 Intr -  47828  47680  149  2  2   85   19    92 0.195   1.03
 4.08 Intr -  50185  50108   78  1  0   87   56    90 0.507   5.45
 4.07 Intr -  53226  53083  144  0  0   79   81    23 0.295   1.18
 4.06 Intr -  55439  55402   38  0  2   72   99    26 0.270   0.08
 4.05 Intr -  56575  56487   89  0  2  109   47    63 0.337   3.91
 4.04 Intr -  63842  63689  154  0  1   87   66    57 0.143   2.53
 4.03 Intr -  83869  83846   24  2  0  143   75    13 0.559   3.50
 4.02 Intr -  87894  87589  306  1  0   -8   36   218 0.177   3.42
 4.01 Init -  92672  92552  121  2  1   79   80    90 0.315   5.68
 4.00 Prom -  93383  93344   40                              -5.86

 5.03 PlyA -  94001  93996    6                               1.05
 5.02 Term -  97646  97171  476  0  2   81   48   176 0.087   7.95
 5.01 Init -  98739  98604  136  0  1   83  100    11 0.116   2.12
 5.00 Prom -  99688  99649   40                              -6.76

 6.11 PlyA -  99783  99778    6                              -0.45
 6.10 Term - 100180  99998  183  1  0   77   41   425 0.999  34.24
 6.09 Intr - 101996 101751  246  2  0  116   89   313 0.999  31.86
 6.08 Intr - 105240 105121  120  0  0  112   81   313 0.999  33.69
 6.07 Intr - 105599 105461  139  1  1   92   89   203 0.994  21.27
 6.06 Intr - 106419 106320  100  1  1   81   89   152 0.999  13.77
 6.05 Intr - 109706 109538  169  2  1   65   52   169 0.847  10.52
 6.04 Intr - 111744 111535  210  0  0  121   86   194 0.999  21.61
 6.03 Intr - 117692 117386  307  1  1  104  115   310 0.999  31.75
 6.02 Intr - 124570 124506   65  1  2  111  121    79 0.998  11.02
 6.01 Init - 130387 130127  261  1  0   89  109   480 0.999  45.26
 6.00 Prom - 157784 157745   40                              -5.76

 7.00 Prom + 158561 158600   40                              -1.26
 7.01 Sngl + 160308 160559  252  2  0   80   42   202 0.760   7.91
 7.02 PlyA + 161020 161025    6                               1.05

 8.00 Prom + 165962 166001   40                              -5.56
 8.01 Init + 166932 167042  111  2  0   76   52    63 0.606   1.71
 8.02 Term + 172461 172613  153  2  0   55   55   116 0.780   2.92
 8.03 PlyA + 175223 175228    6                               1.05

 9.05 PlyA - 177165 177160    6                               1.05
 9.04 Term - 181134 181052   83  1  2   79   45    68 0.450  -0.54
 9.03 Intr - 181407 181219  189  1  0   82   47    78 0.380   2.66
 9.02 Intr - 193536 193434  103  0  1   87   90    43 0.212   4.15
 9.01 Init - 205986 205696  291  0  0   80   45   175 0.218   7.56
 9.00 Prom - 207654 207615   40                              -5.86

10.05 PlyA - 208048 208043    6                               1.05
10.04 Term - 216173 216088   86  0  2   39   43    75 0.069  -4.08
10.03 Intr - 222646 222511  136  1  1   64   85    54 0.534   2.84
10.02 Intr - 222904 222768  137  2  2   82   45    84 0.444   3.79
10.01 Init - 225557 225362  196  2  1   87   84   112 0.592   9.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 197679 197559  121  2  1  128   41    62 0.858   3.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_1|114_aa
MAKPKSLKPIKRFLTSGWEHHKAMWITLIPGTMGPKCLWTNVWTNAPRALMLSGDSQALS
TGHSQLSVVAMGPPVLRTSSGAPPPMPPGTMLSFPRVSAGPFQACGLCGIQPVD

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_1|345_bp
atggccaaacccaagtcactcaagccaattaaaagattcctcacttctggttgggaacac
cacaaagccatgtggatcaccctcatccctggaacgatggggcccaaatgcctatggaca
aatgtgtggacaaatgccccccgggctctgatgctctctggagacagccaagccctaagc
actggccattcacagctctctgtggtggctatgggtccacctgtcctccggactagctct
ggagccccccctcccatgcctcctggaacaatgctgagcttcccccgtgtgtctgcaggt
cctttccaggcttgtggcctgtgtgggatccagcctgtggactga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_2|118_aa
MMRRRDHEFNSGYSKFEMPVWHYTVQEMMQYRGLKYRRGAYTSDQDLKIINKEFLHEEIH
KDLLVMGAYEISNKSGGAGSLHSHLKVTDSAGHILYSKEDATKGKFAFILEDYDMFEV

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_2|357_bp
atgatgagaaggagagatcatgagttcaactctgggtattccaaatttgagatgcctgtg
tggcattacactgttcaggaaatgatgcagtatcgaggtctgaagtacaggagaggagcc
tacacttcagaccaagatttgaaaattatcaacaaagagttcctccatgaggagatccac
aaggacctgctagtgatgggtgcgtacgagatctccaacaagtctgggggtgctggcagc
ctgcacagccacctcaaggtcacagattctgctggccacattctctactccaaagaggat
gcaaccaaagggaaatttgcctttatcctggaagattatgacatgtttgaagtgtga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_3|133_aa
MGAALLLLRLIWTLVMAGLSQHVGASQLPDMRVRLSWLVQPPAVYRHMKELSRNQSRLPR
TQEPFSCSTELRAKQKEPFRGASLVLGPGPSSGATVLPDMSLLSTSGGESQPVLESPSMA
PHGCIAKKKQKCV

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_3|402_bp
atgggggccgccttgctcctgttgagactgatttggaccttagtcatggctggcctgagt
cagcacgtgggagccagccaattgccagatatgcgagtgaggttatcctggcttgttcag
ccaccagctgtctataggcacatgaaagagctcagcaggaatcagtccaggttacccaga
acacaagaaccgttcagctgctccacagaactgcgagcaaaacaaaaggagccattcagg
ggtgcatccttagttctaggccctggaccaagctctggggctacagtattgccagatatg
tcccttctttctacaagtggaggtgaaagtcagccagtcctggaaagccccagcatggct
ccacatggatgcattgccaagaagaagcagaagtgtgtgtga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_4|525_aa
MSLALGIQSGVGRVPATGTLCSPQRCLQSGNDKEPVHALPAGGDGNPRPHALAAPGCPAG
RQLPVQETQPREGRRKVPRLRGAQRGLAPDDRLRNGLLPRVSRSLQRPKSPADLEHLQAL
GRGPGAIPAALAWELRLLVVAPGVQSPAGAGPFPSTGREPSRTINNDYKTNSLVTNDGSL
QVFTLRRSTPLRKKLNNEASLRKHSACCLGGPEDTGWVPVVEVPGQHLHIADVLPVEGDP
QMTQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEFGPCTHPLPFDMYPVAIKVA
PNGSQAMTKLNIGTGILQQALSWGHAAPRPQQPAHIAALILQNGPSSCNGLAGQQSAIAK
GKDSGAWSTIFTLMTSKWIIFSPNFSPDSRLINPTADSSIVRSLGQQQDGSSHGEAEEST
PAQEASGSPHQGSEMDRQPARPQEMGGFREAPQLELTQPVQLDLAQFPGGSRGGGRWGDC
GAGPMALAALPSENKASCRNSGRMRLFPMPLLRLALRGKHPESGP

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_4|1578_bp
atgtccctggccctggggatacagtcgggagtgggcagagtccccgccacagggaccttg
tgcagcccacagagatgcctgcagagtggaaatgataaggagcccgttcacgctctgcca
gccgggggtgacgggaacccacgtcctcacgccctggctgctcccggctgccccgcgggc
cggcagcttcccgttcaggaaactcagcctcgggaagggcggagaaaggtcccgcggctg
cgaggagcccagcggggcttggcgcctgatgaccggctccggaacgggctgttaccccgc
gtatctcggtctctgcagcggccaaagtcgcccgctgacctggagcacctgcaggccctg
ggcagaggacccggggccattcccgcagccctggcctgggagctccggcttctagtggtg
gctccgggtgtccagagcccggctggcgcagggcccttcccctccacggggagagagcct
tctagaaccataaacaatgactacaagacaaacagccttgtgaccaatgatgggagcttg
caagtgtttacactgcgtagatcaacacctttaagaaaaaaacttaacaatgaagcaagt
cttaggaagcacagtgcctgctgcctgggggggcctgaagacacaggatgggtccccgtt
gtggaggtgcccgggcagcacctgcatatagcagatgtgcttcctgtggaaggagacccc
cagatgacacagggacccccagactctcagcccctaggcaccctgggccagggtggttgg
aagcttctaggcattgtggggtctctggcaccagagacactcgggggtctggggaccgag
tttgggccctgtacccacccactaccatttgacatgtatcctgtggccattaaagtcgca
ccgaatggctctcaggccatgaccaaactgaacattgggactggaattttgcagcaagcc
ctcagctggggccatgctgccccccgcccccaacagccagcacacatcgctgctttgatt
ctgcaaaatggaccaagcagctgcaatggacttgccggacagcagagcgcaattgccaaa
ggcaaggactctggagcgtggagcaccatcttcacactgatgacttccaaatggattatc
ttcagccccaatttctcccctgactccaggctcataaatccaactgccgactccagcatt
gtcagaagcctggggcaacagcaagacggcagcagccatggcgaggcagaagagtcaacg
ccagcccaggaagcatcaggaagtccacatcaggggagtgagatggacagacagcctgca
cggccgcaggaaatgggtggcttccgcgaagccccccagctggagttgacacagcctgtc
cagctggacctggcccagtttccaggcggctccaggggcggggggcgctggggggactgt
ggcgccggtccgatggctctagcagcgctgccatctgagaacaaagcgtcctgcaggaat
tccggccggatgaggctctttcccatgccccttctgcggctggctctgcgcggaaagcat
cctgaatccggcccctga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_5|203_aa
MAKWRCSGHPSGSVPGQVDIQAWNYKVWCASGKCGAAGPRHGYGKGNPRAAVPHGGALLY
RGCIPPRAIWSAASPALFILLLSLNLFLRFLEQSESLAEIKITRWARVQIGGRPLLGRRA
SRRPEERAAPAPWCPFVTLRHVTRRAPGSMGEIAGADGGLGLEKSRMRGANLKAARLQQN
QSQFSGCGATYGCGLVNGLLWPD

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_5|612_bp
atggcaaaatggaggtgctcgggacatccaagtgggagtgtccctgggcaggtggatatt
caggcctggaattataaggtctggtgtgcaagtggtaaatgtggggctgccgggcctaga
catggttatggaaaagggaacccccgggcggctgtgcctcacggaggggccctgctttac
cgcggctgcataccacctcgggccatttggtcagctgcttcaccagctctcttcatcctc
ttactctccctgaatctttttcttcgttttttggagcagtcagaaagcttggccgaaatc
aagataactcgctgggcccgcgtgcagattggtgggcgccctctgctgggccggcgggcc
tctcgcaggcctgaggagcgagctgcgcctgcgccctggtgtcccttcgtaacactgcgg
cacgtcacgaggcgggcaccggggagtatgggcgaaatcgcaggcgcagacggcgggctc
gggctagaaaagtcgcgcatgcgtggggctaatttaaaggcggcgcggctccaacagaac
caaagccaattctccggctgtggcgccacctacgggtgtgggctcgtaaacggcctcctc
tggccggactag

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_6|599_aa
MEAPAAGLFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGG
GSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVA
LDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASR
NVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWG
NIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKDVYYRDEIGNVSTSHLLIL
DDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSL
TVKIILPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHY
TFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNK
RIGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTEGSDLCDRV
SEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_6|1800_bp
atggaggcgccagccgccggcttgtttctgctcctgttgcttgggacttgggccccggcg
ccgggcagcgcctcctccgaggcaccgccgctgatcaatgaggacgtgaagcgcacagtg
gacctaagcagccacctggctaaggtgacggccgaggtggtcctggcgcacctgggcggc
ggctccacgtcccgagctacctctttcctgctggctttggagcctgagctcgaggcccgg
ctggcgcacctgggcgtgcaggtaaagggagaagatgaggaagagaacaatttggaagta
cgtgaaaccaaaattaagggtaaaagtgggagattcttcacagtcaagctcccagttgct
cttgatcctggggccaagatttcagtcattgtggaaacagtctacacccatgtgcttcat
ccgtatccaacccagatcacccagtcagagaaacagtttgtggtgtttgaggggaaccat
tatttctactctccctatccaacgaagacacaaaccatgcgtgtgaagcttgcctctcga
aatgtggagagctacaccaagctggggaaccccacgcgctctgaggacctactggattat
gggcctttcagagatgtgcctgcctatagtcaggatacttttaaagtacattatgagaac
aacagccctttcctgaccatcaccagcatgacccgagtcattgaagtctctcactggggt
aatattgctgtggaagaaaatgtggacttaaagcacacaggagctgtgcttaaggggcct
ttctcacgctatgattaccagagacagccagatagtggaatatcctccatccgttctttt
aaggatgtttattaccgggatgagattggcaatgtttctaccagccacctccttattttg
gatgactctgtagagatggaaatccggcctcgcttccctctctttggcgggtggaagacc
cattacatcgttggctacaacctcccaagctatgagtacctctataatttgggtgaccag
tatgcactgaagatgaggtttgtggaccatgtgtttgatgaacaagtgatagattctctg
actgtgaagatcatcctgcctgaaggagccaagaacattgaaattgatagtccctatgaa
atcagccgtgccccagatgagctgcactacacctatctggacacatttggccgccctgtg
attgttgcctacaagaaaaatctggtagaacagcacattcaggacattgtggtccactac
acgttcaacaaggtgctcatgctgcaggagcccctgctggtggtggcggccttctacatc
ctgttcttcaccgttatcatctatgttcggctggacttctccatcaccaaggatccagcc
gcagaagccaggatgaaggtagcctgcatcacagagcaggtcttgaccctggtcaacaag
agaataggcctttaccgtcactttgacgagaccgtcaataggtacaagcaatcccgggac
atctccaccctcaacagtggcaagaagagcctggagactgaacacaaggccttgaccagt
gagattgcactgctgcagtccaggctgaagacagagggctctgatctgtgcgacagagtg
agcgaaatgcagaagctggatgcacaggtcaaggagctggtgctgaagtcggcggtggag
gctgagcgcctggtggctggcaagctcaagaaagacacgtacattgagaatgagaagctc
atctcaggaaagcgccaggagctggtcaccaagatcgaccacatcctggatgccctgtag

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_7|83_aa
MTPIWLTAQAHTQSQEASPTSPQLCIHSRQAVPEAECRIGQRQRRCSGTAARGRGVAVLA
CTSLVTSAERLRQWRILPYATTG

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_7|252_bp
atgacccccatatggctcactgcgcaagctcacacccagtcccaggaagcgagccccacg
tcgccccagctctgcattcacagccgccaagcggtcccggaagccgaatgccggataggt
caaagacagcgccgctgctccggcactgccgccagagggcgcggagtcgccgtgttggcc
tgcacctcccttgtcacgtcagccgaacggctacggcaatggaggattttgccgtatgcg
acgacaggatga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_8|87_aa
MVRKDLIELVILDLGPQEKSASGRKNKYKFLDMGMCLSLNTANSRYAGVISPHTKHRFCG
FPSRHQLGVLQFSSDTIYLEIVSDPTG

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_8|264_bp
atggtcagaaaagacctcattgagttggtgatacttgatctgggaccccaagagaagagt
gcttctggcagaaagaacaagtataaattcctcgacatgggaatgtgcttgtcactcaac
actgccaacagcagatatgcgggggttatttccccacacaccaaacatcgattctgcgga
ttccccagtagacatcagctgggtgtcctccagttcagttctgacaccatctacctggag
atagtgtcagatcccacaggttga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_9|221_aa
MGPGRRPGWARCLPRPLRWGLRAGRVARAPAEEETKRRTEARRSKFWFQGTLPSSPSRQL
RRCRRLRLYGQDSRPAPTSATAAAPSGSTCHETLDARAFTTCLMESHSRTQGLPQSGLRG
FGFPSDCPDEPDPGATRNNIFGEVKTLPGHFLMAVVICQIPVPLWWAWSVAESTQEICQA
LRLSLQPGCFLNGAVSGLQSAFQEDSTERAAVMVQGDGDAA

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_9|666_bp
atggggccaggccgccggccgggctgggcccgctgcttaccgcggccgctgcgctggggg
ctccgggccgggcgcgtcgcgagggctcccgccgaggaggagactaaacggaggacagaa
gcgagaaggtccaagttctggttccagggaactctcccgagctctccaagccgccaactc
cgccgctgccgccgcctcaggctttatggccaagactccaggcccgctcccacttccgcc
accgccgccgccccgagcggaagtacctgtcacgagacgctcgacgccagggcctttacc
acttgcttaatggaaagtcacagccgcacccaggggctgcctcagagtggactcagaggc
tttggcttccccagtgactgcccagatgagccagaccctggagctaccaggaacaatatc
tttggagaagtgaaaactcttccaggccacttcctgatggctgtggtcatttgccagatc
ccagttcccctctggtgggcctggtctgttgcagagagcactcaggaaatctgccaggcc
ctccgcctgagtctccaacctggctgcttcctcaatggtgcagtctctggcctgcagtct
gcattccaggaagacagtacagaaagagcagcagtgatggtgcagggggatggggatgct
gcctga

>gi568815595r:128520414_128750800|GENSCAN_predicted_peptide_10|184_aa
MDLNRCQGALVKKPTLLCDQHTQLRGLNQQRMDVCKLPTKSLHGIQVKRTTGTPVAFKSI
LFKVRGSCGGRGMGGKLGLRAALADQREFRVGVGLEGPTLGVAGWRHRPGAGSGPAARHA
RALLRWAPVKPEPPRRAPPPALQRLVPSAAQGLRSAVLFPFAKTAINTPITAAPLVGVRM
MQSL

>gi568815595r:128520414_128750800|GENSCAN_predicted_CDS_10|555_bp
atggacttaaataggtgccagggggcgctggtcaagaagcccacattgctgtgtgaccag
cacactcagctcagaggactcaaccagcagaggatggatgtgtgcaaactgccaacaaag
tctctgcatgggattcaagtcaagaggacaactggcacccctgtggccttcaaaagcatc
ctattcaaagtaagggggagttgtggagggagaggcatgggcgggaaactggggctgcgc
gcggcactcgcggaccagcgggagttccgggtgggtgtgggcttggagggccccacactc
ggagtggccggctggcgccaccggcctggggcaggctctggacctgcagcccgccatgcc
cgagccctcctgcggtgggctcccgtgaagcccgagcctccccgacgggcaccgccccct
gctctgcagcgcctggtcccatcggcagcccaagggctgaggagtgcagttctttttccc
tttgccaagacagccatcaatactcctatcacggctgctcctttggttggagtaagaatg
atgcagagcctctag