Result of FASTA (omim) for pF1KB5490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5490, 494 aa
  1>>>pF1KB5490 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5126+/-0.000425; mu= 16.6268+/- 0.027
 mean_var=66.3265+/-13.586, 0's: 0 Z-trim(110.4): 27  B-trim: 209 in 2/50
 Lambda= 0.157482
 statistics sampled from 18782 (18798) to 18782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.22), width:  16
 Scan time:  8.990

The best scores are:                                      opt bits E(85289)
NP_003350 (OMIM: 603370) UDP-glucose 6-dehydrogena ( 494) 3271 752.5 6.1e-217
XP_005262724 (OMIM: 603370) PREDICTED: UDP-glucose ( 507) 3271 752.5 6.2e-217
NP_001171630 (OMIM: 603370) UDP-glucose 6-dehydrog ( 397) 2612 602.8 5.9e-172
NP_001171629 (OMIM: 603370) UDP-glucose 6-dehydrog ( 427) 2247 519.9 5.8e-147


>>NP_003350 (OMIM: 603370) UDP-glucose 6-dehydrogenase i  (494 aa)
 initn: 3271 init1: 3271 opt: 3271  Z-score: 4015.8  bits: 752.5 E(85289): 6.1e-217
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
              430       440       450       460       470       480

              490    
pF1KB5 KFSLQDPPNKKPKV
       ::::::::::::::
NP_003 KFSLQDPPNKKPKV
              490    

>>XP_005262724 (OMIM: 603370) PREDICTED: UDP-glucose 6-d  (507 aa)
 initn: 3271 init1: 3271 opt: 3271  Z-score: 4015.6  bits: 752.5 E(85289): 6.2e-217
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:14-507)

                            10        20        30        40       
pF1KB5              MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS
                    :::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWSSGLLIQDSTIMFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 PTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLK
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB5 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGT
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB5 AIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFL
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB5 AQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYL
              250       260       270       280       290       300

       290       300       310       320       330       340       
pF1KB5 CEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRE
              310       320       330       340       350       360

       350       360       370       380       390       400       
pF1KB5 SSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDG
              370       380       390       400       410       420

       410       420       430       440       450       460       
pF1KB5 AHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVS
              430       440       450       460       470       480

       470       480       490    
pF1KB5 SKRIPYAPSGEIPKFSLQDPPNKKPKV
       :::::::::::::::::::::::::::
XP_005 SKRIPYAPSGEIPKFSLQDPPNKKPKV
              490       500       

>>NP_001171630 (OMIM: 603370) UDP-glucose 6-dehydrogenas  (397 aa)
 initn: 2612 init1: 2612 opt: 2612  Z-score: 3208.1  bits: 602.8 E(85289): 5.9e-172
Smith-Waterman score: 2612; 100.0% identity (100.0% similar) in 397 aa overlap (98-494:1-397)

        70        80        90       100       110       120       
pF1KB5 NLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT
                                     ::::::::::::::::::::::::::::::
NP_001                               MGKGRAADLKYIEACARRIVQNSNGYKIVT
                                             10        20        30

       130       140       150       160       170       180       
pF1KB5 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
               40        50        60        70        80        90

       190       200       210       220       230       240       
pF1KB5 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
              100       110       120       130       140       150

       250       260       270       280       290       300       
pF1KB5 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
              160       170       180       190       200       210

       310       320       330       340       350       360       
pF1KB5 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
              220       230       240       250       260       270

       370       380       390       400       410       420       
pF1KB5 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
              280       290       300       310       320       330

       430       440       450       460       470       480       
pF1KB5 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
              340       350       360       370       380       390

       490    
pF1KB5 PNKKPKV
       :::::::
NP_001 PNKKPKV
              

>>NP_001171629 (OMIM: 603370) UDP-glucose 6-dehydrogenas  (427 aa)
 initn: 2246 init1: 2246 opt: 2247  Z-score: 2759.4  bits: 519.9 E(85289): 5.8e-147
Smith-Waterman score: 2700; 86.4% identity (86.4% similar) in 494 aa overlap (1-494:1-427)

               10        20        30        40        50        60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
       :::::::::::::::::::::::::::::                               
NP_001 VESCRGKNLFFSTNIDDAIKEADLVFISV-------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
                                           ::::::::::::::::::::::::
NP_001 ------------------------------------LSNPEFLAEGTAIKDLKNPDRVLI
                                          90       100       110   

              190       200       210       220       230       240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
           120       130       140       150       160       170   

              250       260       270       280       290       300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
           180       190       200       210       220       230   

              310       320       330       340       350       360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
           240       250       260       270       280       290   

              370       380       390       400       410       420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
           300       310       320       330       340       350   

              430       440       450       460       470       480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
           360       370       380       390       400       410   

              490    
pF1KB5 KFSLQDPPNKKPKV
       ::::::::::::::
NP_001 KFSLQDPPNKKPKV
           420       




494 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:02:09 2016 done: Sat Nov  5 13:02:10 2016
 Total Scan time:  8.990 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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