Result of FASTA (ccds) for pF1KB5490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5490, 494 aa
  1>>>pF1KB5490 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7427+/-0.000937; mu= 15.1251+/- 0.057
 mean_var=63.2242+/-12.670, 0's: 0 Z-trim(103.6): 24  B-trim: 0 in 0/48
 Lambda= 0.161299
 statistics sampled from 7476 (7487) to 7476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.23), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS3455.1 UGDH gene_id:7358|Hs108|chr4            ( 494) 3271 770.2       0
CCDS54757.1 UGDH gene_id:7358|Hs108|chr4           ( 397) 2612 616.8 1.3e-176
CCDS54758.1 UGDH gene_id:7358|Hs108|chr4           ( 427) 2247 531.9 5.2e-151


>>CCDS3455.1 UGDH gene_id:7358|Hs108|chr4                 (494 aa)
 initn: 3271 init1: 3271 opt: 3271  Z-score: 4111.4  bits: 770.2 E(32554):    0
Smith-Waterman score: 3271; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
              430       440       450       460       470       480

              490    
pF1KB5 KFSLQDPPNKKPKV
       ::::::::::::::
CCDS34 KFSLQDPPNKKPKV
              490    

>>CCDS54757.1 UGDH gene_id:7358|Hs108|chr4                (397 aa)
 initn: 2612 init1: 2612 opt: 2612  Z-score: 3284.2  bits: 616.8 E(32554): 1.3e-176
Smith-Waterman score: 2612; 100.0% identity (100.0% similar) in 397 aa overlap (98-494:1-397)

        70        80        90       100       110       120       
pF1KB5 NLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT
                                     ::::::::::::::::::::::::::::::
CCDS54                               MGKGRAADLKYIEACARRIVQNSNGYKIVT
                                             10        20        30

       130       140       150       160       170       180       
pF1KB5 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE
               40        50        60        70        80        90

       190       200       210       220       230       240       
pF1KB5 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGAD
              100       110       120       130       140       150

       250       260       270       280       290       300       
pF1KB5 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN
              160       170       180       190       200       210

       310       320       330       340       350       360       
pF1KB5 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIY
              220       230       240       250       260       270

       370       380       390       400       410       420       
pF1KB5 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYER
              280       290       300       310       320       330

       430       440       450       460       470       480       
pF1KB5 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIPKFSLQDP
              340       350       360       370       380       390

       490    
pF1KB5 PNKKPKV
       :::::::
CCDS54 PNKKPKV
              

>>CCDS54758.1 UGDH gene_id:7358|Hs108|chr4                (427 aa)
 initn: 2246 init1: 2246 opt: 2247  Z-score: 2824.6  bits: 531.9 E(32554): 5.2e-151
Smith-Waterman score: 2700; 86.4% identity (86.4% similar) in 494 aa overlap (1-494:1-427)

               10        20        30        40        50        60
pF1KB5 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS
       :::::::::::::::::::::::::::::                               
CCDS54 VESCRGKNLFFSTNIDDAIKEADLVFISV-------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB5 NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI
                                           ::::::::::::::::::::::::
CCDS54 ------------------------------------LSNPEFLAEGTAIKDLKNPDRVLI
                                          90       100       110   

              190       200       210       220       230       240
pF1KB5 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
           120       130       140       150       160       170   

              250       260       270       280       290       300
pF1KB5 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYW
           180       190       200       210       220       230   

              310       320       330       340       350       360
pF1KB5 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
           240       250       260       270       280       290   

              370       380       390       400       410       420
pF1KB5 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMF
           300       310       320       330       340       350   

              430       440       450       460       470       480
pF1KB5 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKVSSKRIPYAPSGEIP
           360       370       380       390       400       410   

              490    
pF1KB5 KFSLQDPPNKKPKV
       ::::::::::::::
CCDS54 KFSLQDPPNKKPKV
           420       




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:02:08 2016 done: Sat Nov  5 13:02:09 2016
 Total Scan time:  2.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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