Result of FASTA (ccds) for pF1KB5443
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5443, 193 aa
  1>>>pF1KB5443 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2760+/-0.000842; mu= 12.2459+/- 0.050
 mean_var=54.7644+/-10.705, 0's: 0 Z-trim(104.7): 42  B-trim: 0 in 0/52
 Lambda= 0.173311
 statistics sampled from 7985 (8025) to 7985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.247), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS10736.1 CBLN1 gene_id:869|Hs108|chr16          ( 193) 1266 324.6 2.4e-89
CCDS11999.1 CBLN2 gene_id:147381|Hs108|chr18       ( 224)  977 252.3 1.5e-67
CCDS13448.1 CBLN4 gene_id:140689|Hs108|chr20       ( 201)  890 230.6 4.9e-61
CCDS32057.1 CBLN3 gene_id:643866|Hs108|chr14       ( 205)  724 189.1 1.6e-48
CCDS8720.1 CAPRIN2 gene_id:65981|Hs108|chr12       (1077)  341 93.5 4.8e-19
CCDS31793.1 C1QL4 gene_id:338761|Hs108|chr12       ( 238)  296 82.1 2.9e-16
CCDS42737.1 C1QL2 gene_id:165257|Hs108|chr2        ( 287)  277 77.3 9.4e-15
CCDS31156.1 C1QL3 gene_id:389941|Hs108|chr10       ( 255)  271 75.8 2.4e-14
CCDS11492.1 C1QL1 gene_id:10882|Hs108|chr17        ( 258)  269 75.3 3.4e-14
CCDS3904.1 C1QTNF3 gene_id:114899|Hs108|chr5       ( 246)  250 70.6 8.8e-13
CCDS34141.1 C1QTNF3 gene_id:114899|Hs108|chr5      ( 319)  250 70.6 1.1e-12


>>CCDS10736.1 CBLN1 gene_id:869|Hs108|chr16               (193 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1717.6  bits: 324.6 E(32554): 2.4e-89
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW
              130       140       150       160       170       180

              190   
pF1KB5 KYSTFSGFLVFPL
       :::::::::::::
CCDS10 KYSTFSGFLVFPL
              190   

>>CCDS11999.1 CBLN2 gene_id:147381|Hs108|chr18            (224 aa)
 initn: 978 init1: 819 opt: 977  Z-score: 1326.0  bits: 252.3 E(32554): 1.5e-67
Smith-Waterman score: 977; 79.8% identity (88.6% similar) in 193 aa overlap (2-193:32-224)

                                            10        20        30 
pF1KB5                              MLGVLELLLLGAAWLAGPARGQNETEPIVLE
                                     :::   :::       :.:.::.:::::::
CCDS11 QAPGRGPLGLRLMMPGRRGALREPGGCGSCLGVALALLLLLLPACCPVRAQNDTEPIVLE
              10        20        30        40        50        60 

              40        50         60        70        80        90
pF1KB5 GKCLVVCDSNPTSDPTGTA-LGISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVL
       :::::::::.:..: . :. :::::::::::::::: ::::::::::::::: :::::::
CCDS11 GKCLVVCDSSPSADGAVTSSLGISVRSGSAKVAFSATRSTNHEPSEMSNRTMTIYFDQVL
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB5 VNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTR
       :::::.::   : :.:::::::::.::::::::::::::::: ::.::::::::::::::
CCDS11 VNIGNHFDLASSIFVAPRKGIYSFSFHVVKVYNRQTIQVSLMQNGYPVISAFAGDQDVTR
             130       140       150       160       170       180 

              160       170       180       190   
pF1KB5 EAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPL
       ::::::::. ::. :...:::::::::::::::::::::::::
CCDS11 EAASNGVLLLMEREDKVHLKLERGNLMGGWKYSTFSGFLVFPL
             190       200       210       220    

>>CCDS13448.1 CBLN4 gene_id:140689|Hs108|chr20            (201 aa)
 initn: 664 init1: 509 opt: 890  Z-score: 1209.2  bits: 230.6 E(32554): 4.9e-61
Smith-Waterman score: 890; 74.3% identity (91.6% similar) in 179 aa overlap (18-193:24-201)

                     10        20        30        40        50    
pF1KB5       MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTA---L
                              :. .::.::::::::::::::::::..:  :..   :
CCDS13 MGSGRRALSAVPAVLLVLTLPGLPVWAQNDTEPIVLEGKCLVVCDSNPATDSKGSSSSPL
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB5 GISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGI
       :::::....::::::.::::::::::::.: ::::::.:::.:: :  : :.:.::::::
CCDS13 GISVRAANSKVAFSAVRSTNHEPSEMSNKTRIIYFDQILVNVGNFFTLE-SVFVAPRKGI
               70        80        90       100        110         

             120       130       140       150       160       170 
pF1KB5 YSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKL
       :::.:::.:::. :::::.::::: :::::::::.:::::::.::::. ..: :..::::
CCDS13 YSFSFHVIKVYQSQTIQVNLMLNGKPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKL
     120       130       140       150       160       170         

             180       190   
pF1KB5 ERGNLMGGWKYSTFSGFLVFPL
       :.:::.:::.::::::::::::
CCDS13 EKGNLVGGWQYSTFSGFLVFPL
     180       190       200 

>>CCDS32057.1 CBLN3 gene_id:643866|Hs108|chr14            (205 aa)
 initn: 709 init1: 553 opt: 724  Z-score: 984.8  bits: 189.1 E(32554): 1.6e-48
Smith-Waterman score: 724; 58.8% identity (80.4% similar) in 194 aa overlap (4-193:21-205)

                                10        20        30        40   
pF1KB5                  MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSN--
                           :: :: :::.:      .:. .::..:::.:::::. .  
CCDS32 MLGAKPHWLPGPLHSPGLPLVLVLLALGAGW------AQEGSEPVLLEGECLVVCEPGRA
               10        20        30              40        50    

              50        60        70         80         90         
pF1KB5 PTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPS-EMSNRTM-IIYFDQVLVNIGNNFDS
        .. : :.:::   ..  ..:::.:.:: .:::. : .: :   ::::::::: :..:: 
CCDS32 AAGGPGGAALG---EAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDR
           60           70        80        90       100       110 

     100       110       120       130       140       150         
pF1KB5 ERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLI
         ..:.:: .:.::: :::::::::::.::::::: ::::::::.: :::::::...::.
CCDS32 ASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLL
             120       130       140       150       160       170 

     160       170       180       190   
pF1KB5 QMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPL
        .. :::. :.:.::::.::::::.:::::.:::
CCDS32 PLDPGDRVSLRLRRGNLLGGWKYSSFSGFLIFPL
             180       190       200     

>>CCDS8720.1 CAPRIN2 gene_id:65981|Hs108|chr12            (1077 aa)
 initn: 317 init1: 218 opt: 341  Z-score: 455.4  bits: 93.5 E(32554): 4.8e-19
Smith-Waterman score: 341; 37.9% identity (68.6% similar) in 153 aa overlap (42-191:926-1075)

              20        30        40        50          60         
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRS--GSAKVAFSAIRS
                                     :...:..: : . :     . .::::: :.
CCDS87 QVSSPERDNETFNSGDSGQGDSRSMTPVDVPVTNPAATILPVHVYPLPQQMRVAFSAART
         900       910       920       930       940       950     

      70        80        90       100       110       120         
pF1KB5 TNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQV
       .:  :. ...    : :: .: :.:..:: . . :  : .: : : ::..:.     . :
CCDS87 SNLAPGTLDQ---PIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLAVNVPLYV
         960          970       980       990      1000      1010  

     130       140       150       160       170        180        
pF1KB5 SLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGG-WKYSTFSGF
       .:: :   ..::.:.:    .:.::: ...:. .::. .:.:.:: ..:. ::::::::.
CCDS87 NLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIYGSSWKYSTFSGY
           1020      1030      1040      1050      1060      1070  

      190   
pF1KB5 LVFPL
       :..  
CCDS87 LLYQD
            

>>CCDS31793.1 C1QL4 gene_id:338761|Hs108|chr12            (238 aa)
 initn: 338 init1: 128 opt: 296  Z-score: 405.3  bits: 82.1 E(32554): 2.9e-16
Smith-Waterman score: 301; 31.7% identity (57.5% similar) in 186 aa overlap (11-192:64-237)

                                   10        20        30        40
pF1KB5                     MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDS
                                     : : : ::    .   :    :.       
CCDS31 PHGPRGPGPDGAPASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGR------P
            40        50        60        70        80             

               50        60         70        80        90         
pF1KB5 NPTSDPTGTALGISVRSGSA-KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDS
       .: . :     :..  .: . ..:: :     ::  :      .. ::.:..:.:: ...
CCDS31 GPPGPPGPGPGGVAPAAGYVPRIAFYAGLRRPHEGYE------VLRFDDVVTNVGNAYEA
        90       100       110       120             130       140 

     100       110        120       130       140       150        
pF1KB5 ERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVL
         . :  :  :.: : .::. .  .  .. ..:: ::    ::.: : : . . :::.:.
CCDS31 ASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVI
             150       160       170       180       190       200 

      160       170       180         190   
pF1KB5 IQMEKGDRAYLKLERGNLMGGW--KYSTFSGFLVFPL
       .... ::....::. :.. ::   ::::::::...: 
CCDS31 LHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD
             210       220       230        

>>CCDS42737.1 C1QL2 gene_id:165257|Hs108|chr2             (287 aa)
 initn: 266 init1: 118 opt: 277  Z-score: 378.3  bits: 77.3 E(32554): 9.4e-15
Smith-Waterman score: 277; 35.0% identity (66.4% similar) in 143 aa overlap (53-192:150-286)

             30        40        50        60        70        80  
pF1KB5 NETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPSEMSNRTM
                                     .:.  .. :.:: .  .. ::  :      
CCDS42 QLTAGTASGVGVVGGGAGVGGDSEGEVTSALSATFSGPKIAFYVGLKSPHEGYE------
     120       130       140       150       160       170         

             90       100       110        120       130       140 
pF1KB5 IIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVSLMLNGWPVISA
       .. ::.:..:.::..:   . :    .::: :..:.. .  .  .. ..:  ::    ::
CCDS42 VLKFDDVVTNLGNHYDPTTGKFSCQVRGIYFFTYHILMRGGDGTSMWADLCKNGQVRASA
           180       190       200       210       220       230   

             150       160       170       180         190   
pF1KB5 FAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGFLVFPL
       .: : : . . :::.:......::..:.::. :.  ::   :::::::::..: 
CCDS42 IAQDADQNYDYASNSVVLHLDSGDEVYVKLDGGKAHGGNNNKYSTFSGFLLYPD
           240       250       260       270       280       

>>CCDS31156.1 C1QL3 gene_id:389941|Hs108|chr10            (255 aa)
 initn: 283 init1: 115 opt: 271  Z-score: 371.1  bits: 75.8 E(32554): 2.4e-14
Smith-Waterman score: 271; 34.6% identity (63.4% similar) in 153 aa overlap (42-191:108-253)

              20        30        40        50        60        70 
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTN
                                     :  . .: :.. .. :   :.:: :  . .
CCDS31 PGEPGPPGPMGPPGEKGEPGRQGLPGPPGAPGLNAAG-AISAATYSTVPKIAFYAGLKRQ
        80        90       100       110        120       130      

              80        90       100       110        120       130
pF1KB5 HEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVS
       ::  :      .. ::.:..:.::..:   . :     ::: :..::. .  .  .. ..
CCDS31 HEGYE------VLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWAD
        140             150       160       170       180       190

              140       150       160       170       180          
pF1KB5 LMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGF
       :  :.    ::.: : : . . :::.:....: ::..:.::. :.  ::   ::::::::
CCDS31 LCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGF
              200       210       220       230       240       250

      190   
pF1KB5 LVFPL
       ...  
CCDS31 IIYAD
            

>>CCDS11492.1 C1QL1 gene_id:10882|Hs108|chr17             (258 aa)
 initn: 313 init1: 115 opt: 269  Z-score: 368.3  bits: 75.3 E(32554): 3.4e-14
Smith-Waterman score: 269; 33.3% identity (63.4% similar) in 153 aa overlap (42-191:111-256)

              20        30        40        50        60        70 
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTN
                                     : .  .: :.. .. .   .::: :  .. 
CCDS11 PGPPGDPGPPGPVGPPGEKGEPGKPGPPGLPGAGGSG-AISTATYTTVPRVAFYAGLKNP
               90       100       110        120       130         

              80        90       100       110        120       130
pF1KB5 HEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVS
       ::  :      .. ::.:..:.:::.:.  . :     : : :..::. .  .  .. ..
CCDS11 HEGYE------VLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRGGDGTSMWAD
     140             150       160       170       180       190   

              140       150       160       170       180          
pF1KB5 LMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGF
       :  ::    ::.: : : . . :::.:..... ::....::. :.  ::   ::::::::
CCDS11 LCKNGQVRASAIAQDADQNYDYASNSVILHLDAGDEVFIKLDGGKAHGGNSNKYSTFSGF
           200       210       220       230       240       250   

      190   
pF1KB5 LVFPL
       ...  
CCDS11 IIYSD
            

>>CCDS3904.1 C1QTNF3 gene_id:114899|Hs108|chr5            (246 aa)
 initn: 259 init1: 205 opt: 250  Z-score: 342.9  bits: 70.6 E(32554): 8.8e-13
Smith-Waterman score: 250; 34.8% identity (65.9% similar) in 132 aa overlap (61-191:117-243)

               40        50        60        70        80        90
pF1KB5 EGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVL
                                     ..:: :  .:.     .::..  : :..: 
CCDS39 GDKGDLGPRGERGQHGPKGEKGYPGIPPELQIAFMASLATH-----FSNQNSGIIFSSVE
         90       100       110       120            130       140 

              100       110       120       130       140       150
pF1KB5 VNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTR
       .:::: ::   . : :: .:.: :.: ..:  . . . : :: ::  :.: .. ..    
CCDS39 TNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFSMYSYEMKGKS
             150       160       170       180       190       200 

              160       170        180       190    
pF1KB5 EAASNGVLIQMEKGDRAYLKLERGNLMGG-WKYSTFSGFLVFPL 
       ...:: ..... :::...:..  : : :   ..:::.:::.:   
CCDS39 DTSSNHAVLKLAKGDEVWLRMGNGALHGDHQRFSTFAGFLLFETK
             210       220       230       240      




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:48:39 2016 done: Sat Nov  5 12:48:39 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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