GENSCAN 1.0	Date run:  5-Nov-116	Time: 12:32:04

Sequence gi568815581r:17283380_17484008 : 200629 bp : 48.97% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  20172  20438  267  2  0   71   49   482 0.048  37.58
 1.02 Intr +  23164  23264  101  0  2   64  106    59 0.018   4.21
 1.03 Intr +  39806  39866   61  2  1  100  116    94 0.197  12.14
 1.04 Term +  39914  40030  117  1  0  104   37   -15 0.090  -6.46
 1.05 PlyA +  41108  41113    6                              -0.45

 2.02 PlyA -  41121  41116    6                              -1.75
 2.01 Sngl -  42255  41779  477  0  0   80   40   299 0.404  20.33
 2.00 Prom -  53848  53809   40                              -3.66

 3.00 Prom +  58721  58760   40                              -5.96
 3.01 Init +  61090  61141   52  0  1   84   37    87 0.606   2.54
 3.02 Intr +  61365  61547  183  1  0   90   94   156 0.963  16.16
 3.03 Intr +  63174  63286  113  1  2   -1   53   138 0.678   1.50
 3.04 Term +  63371  63568  198  1  0   59   49   193 0.716   9.90
 3.05 PlyA +  64256  64261    6                               1.05

 4.06 PlyA -  66329  66324    6                               1.05
 4.05 Term -  67907  67819   89  0  2  129   55    43 0.528   2.92
 4.04 Intr -  68905  68789  117  2  0   65   54   103 0.474   5.04
 4.03 Intr -  72310  72266   45  2  0   91   99    13 0.303   1.08
 4.02 Intr -  78602  78426  177  0  0  -10   57   151 0.129   2.09
 4.01 Init -  84791  84758   34  2  1   52   92    36 0.162   0.44
 4.00 Prom -  88612  88573   40                              -4.36

 5.00 Prom +  89581  89620   40                              -7.66
 5.01 Init +  91394  91507  114  1  0   53   45   129 0.594   5.31
 5.02 Term +  97168  97311  144  0  0   67   55   123 0.517   4.81
 5.03 PlyA +  98494  98499    6                               1.05

 6.02 PlyA -  99194  99189    6                               1.05
 6.01 Sngl - 100633  99998  636  1  0  109   42  1107 0.990 104.39
 6.00 Prom - 104105 104066   40                              -5.36

 7.00 Prom + 106566 106605   40                              -7.36
 7.01 Init + 108545 108589   45  1  0   66  113    66 0.627   7.59
 7.02 Intr + 108764 108866  103  1  1   39   76    79 0.450   1.55
 7.03 Intr + 111236 111339  104  0  2  119   20    64 0.512   2.59
 7.04 Intr + 113127 113240  114  2  0   87   34   109 0.372   6.04
 7.05 Intr + 114902 114935   34  1  1   73   47    53 0.327  -2.50
 7.06 Intr + 116643 116757  115  1  1   87   56   102 0.930   6.41
 7.07 Intr + 116953 117086  134  1  2   41   66   119 0.347   5.29
 7.08 Intr + 138624 138676   53  1  2   78   64    67 0.551   1.93
 7.09 Intr + 139595 140026  432  1  0   14   41   357 0.834  17.44
 7.10 Term + 140057 140236  180  1  0   30   44   181 0.705   5.51
 7.11 PlyA + 141485 141490    6                               1.05

 8.00 Prom + 149162 149201   40                              -1.96
 8.01 Init + 154427 154476   50  1  2  116   75     7 0.846   2.62
 8.02 Term + 156014 156089   76  2  1   93   54    97 0.951   4.11
 8.03 PlyA + 157625 157630    6                               1.05

 9.07 PlyA - 158294 158289    6                               1.05
 9.06 Term - 162425 162297  129  2  0   44   55    92 0.615  -0.32
 9.05 Intr - 163706 163632   75  2  0   96   94    -7 0.397   0.41
 9.04 Intr - 167561 167445  117  2  0   50  105    47 0.281   3.26
 9.03 Intr - 170806 170633  174  1  0   72   98   125 0.954  12.04
 9.02 Intr - 172064 171995   70  1  1  105   26    33 0.276  -2.02
 9.01 Init - 172921 172815  107  1  2   56   72    75 0.279   2.39
 9.00 Prom - 174646 174607   40                              -6.16

10.00 Prom + 174926 174965   40                             -10.15
10.01 Sngl + 176648 177025  378  1  0   85   49   817 0.707  73.66
10.02 PlyA + 177157 177162    6                               1.05

11.00 Prom + 185590 185629   40                              -4.76
11.01 Init + 193663 193886  224  0  2  109   95   145 0.982  14.85
11.02 Intr + 198681 198852  172  0  1   87   51    36 0.002  -0.25

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  20172  20513  342  2  0   71   43   515 0.941  39.33
S.002 Init -  30401  30290  112  2  1   97  116    27 0.900   5.36
S.003 Intr + 185402 185485   84  1  0  120   66    44 0.908   5.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_1|181_aa
MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRAR
FPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEAVKEMAS
LQNTDVFICTSPIKMFKYCPYEKVRGTGLSLPVERGWTLTALPHLCDSGFLLPKDLSSLR
L

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_1|546_bp
atgatccggctgggcggctggtgtgcgcggcggctctgcagcgcggcggttcccgcgggg
cggcgcggggcggcgggcgggctgggcctggcgggaggccgcgccctacgggtgctggtg
gacatggacggcgtgctggctgacttcgagggcggattcctcaggaagttccgcgcgcgc
tttcccgaccagcccttcatcgcgctggaggaccggcgcggcttctgggtgtcggagcag
tacggccgcctgcggccagggctgagcgagaaggccatcagcatttgggagtcaaagaat
ttcttttttgaacttgagcctctgccaggggccgtggaagctgtcaaggagatggccagc
ctacaaaacactgacgtcttcatctgcacaagccccatcaagatgttcaagtactgtccc
tatgagaaggtgaggggtacggggctcagcctgcctgtggaaaggggatggaccctcaca
gcactcccccacctctgtgacagcggctttctgctccccaaggacctctccagcctgagg
ctctag

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_2|158_aa
MICSVRALSACMELKGAGSLGGPVSCTGSKCQDAGNEKRQKQTGARHVFEIGPMGHGTHQ
QAGSEGLEEDISTAPDFRPEATRQHCHAQGNQHPRDRYIGSECLELRGQSRAEATQVGQL
AQRQYLNPQERMNEAMSFISLPQLLVNHHGHPVKLQLK

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_2|477_bp
atgatctgctctgtgagggccttgtcagcctgcatggaactgaaaggagcaggcagttta
ggaggccctgtcagctgtactggcagtaaatgccaagatgctggcaatgagaagagacag
aagcagacaggtgccaggcacgttttcgaaatcggtcccatgggacatgggactcaccaa
caggctggaagtgagggcttagaggaagacatcagcacggcccctgatttccgacctgag
gccaccagacagcactgccatgcacaaggaaaccagcaccccagggacagatacatcggg
tctgagtgtctggagctcagagggcagtcccgggccgaggcaacgcaggtgggacagctg
gcacaaagacagtatctaaatccccaggaacggatgaatgaggccatgtcgttcatctca
ctcccacaactgctggtcaaccaccatggccacccagtgaaactccagctgaaatag

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_3|181_aa
MAALCSLCLGYAVQCSLGLMSLSSHHLPLPVCVQYAWVEKYFGPDFLEQIVLTRDKTVVS
ADLLIDDRPDITGKWPATVLVVTVTRSQSLLTEHWLRVLTASLPHLVPSSHPLRRRAAAL
QVSTAELNAAFPPTGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRP
C

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_3|546_bp
atggccgccctctgctccctgtgtttgggttatgctgtgcagtgttcgctgggtctgatg
tcactttcttctcaccacctgcccttgcctgtttgcgtccagtatgcctgggtggagaag
tactttggccctgactttctggagcagattgtgctgaccagagacaagaccgtggtctct
gctgaccttctcatagacgaccggccggacatcacaggcaagtggcctgcgacagtgctg
gtggtgacagtgacccgcagtcagtccctgttgactgagcactggctgcgcgtgctgacg
gcctccttgccgcatctcgtgccatcctcacacccgctgcgaaggcgggcggctgcgctc
caggtctccactgctgagctgaatgccgctttcccacccacaggggccgagccaaccccc
agctgggagcatgtcctcttcaccgcctgccacaaccagcacctgcagctgcagcccccc
cgccgcaggctgcactcgtgggcggacgactggaaggccattctggacagcaagcggccc
tgctga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_4|153_aa
MNESLAVQHHVELEKPTTLFPEEHPEQSEEPIYDVEIKSSCAASEGPKPKSRPCWDSPCL
RISGSSICEVGKSEPGLVQKAPVKTGSAARFAATTTPRYFWALSTTSSATTVGQSSAARS
EHGHGGNGTAVDWRRIRSFPHMHGLIWPDDPTG

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_4|462_bp
atgaatgagagcttggccgtccagcaccacgtggaattagaaaaaccaaccacactcttc
ccagaagagcaccctgagcagagtgaagagcccatttatgacgtggagattaagagcagc
tgtgcagcgtcagagggcccaaagcccaaatcccggccgtgctgggactcaccatgcctg
cgcatctcaggttcttccatctgtgaagtggggaagtcagagccagggcttgtgcagaaa
gcgccggtaaagacaggctctgctgccaggtttgccgccaccaccacccctcgctatttc
tgggccctttctacgacatcatctgcaaccactgtgggccagagctcagctgctcgctca
gagcatgggcatggtgggaatggcactgccgtggactggagaaggatcagaagctttcct
cacatgcatggcctcatctggcctgacgaccccacggggtga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_5|85_aa
MEKTTASSPEDLVEITDEGGCTKQQILSEDERALYWKKCSDPASAAWCAPLGKALSLNCK
MGSNNSTCSISRPRHCGPWSSSQRY

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_5|258_bp
atggagaaaactacagcaagttctccagaagatctagtggagatcaccgatgaaggtggc
tgcactaaacagcagattctcagtgaggatgaaagagcactctattggaagaagtgttca
gaccctgcttctgctgcctggtgtgcacccttgggcaaggctctgagcctcaactgcaaa
atgggcagcaacaacagcacatgctccatcagccgccctcggcactgtgggccctggtca
tcctcccagcgatactga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_6|211_aa
MTPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVC
CPTVRYHTKVRAGRGFNLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFA
SLRMARANARLFGIRAKRAKEAAEQDVEKKK

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_6|636_bp
atgacgcccagccggaatggcatggtcttgaagccccacttccacaaggactggcagcgg
cgcgtggccacgtggttcaaccagccggcccggaagatccgcagacgtaaggcccggcaa
gccaaggcgcgccgcatcgccccgcgccccgcgtcggggcccatccggcccatcgtgtgc
tgccccacggttcggtaccacacgaaggtgcgcgccggccgcggcttcaatctggaggag
ctcagggtggccggcattcacaagaaggtggcccggaccatcggcatttctgtggatccg
aggaggcggaacaagtccacggagtccctgcaggcgaacgtgcagcggctgaaggagtac
cgctccaaactcatcctcttccccaggaagccctcggcccccaagaagggagacagttct
gctgaagaactgaaactggccacccagctgaccggaccggtcatgcccatccggaatgtc
tataagaaggagaaagctcgagtgatcactgaggaagagaagaatttcaaagccttcgct
agtctccgtatggcccgtgccaacgcccggctcttcggcatacgggcaaaaagagccaag
gaagccgcagaacaggatgttgaaaagaaaaaataa

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_7|437_aa
MAKSAASHLDEVSETVCSFTSETSETTNPPGGMSNFGCATFKSRNTDCEDSPGSSRVGAA
IPVSDWSWLPMEVGDPQPPPCSHQWSKVEVMVCDSQGRVTEGIAVPSCIFWILALENASR
RVLSKAISDNCALRCALLSDVPAADDHSHSDKEAAKAVAPRDEDEAFLFFPLLNDDASAI
YNQRCSYTHTLMGCCFNVTSEQVRCDFALAEPPPPVLLLFVIAIGPLQDPAHHMESCPAA
SVITEQLEANLSKNNRALSVLRRIKSGSVVANRANQGKENSENITTPEVFPRLYHLIPDG
EITSIKINQVDPSESLSIMLMGGSETPLVRIIQHIYHDGANARDDQLLPGDIILNVNGMD
ISKVSHNYALHLLRQPYQKFCSRNSGQALDAYRPQDDSCHVICNKSSPKEQLGIKLVCKV
DEPGVFIFNVLDGSVAD

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_7|1314_bp
atggcaaagtctgcagcttcacacctggatgaagtcagcgagacggtctgcagcttcact
tctgaaaccagcgagaccacgaacccaccaggaggaatgagcaactttggttgcgctacc
tttaagagccggaacactgactgcgaagatagccctggatcctcccgcgttggggccgcc
atccctgtatctgactggagctggcttcccatggaagtaggtgacccgcagccacctccc
tgcagccaccagtggagtaaggtggaggtgatggtgtgtgactcccaaggccgggtcacc
gaaggcattgcagtgccctcctgcatcttttggattctcgccctggagaatgccagccga
cgtgttctctccaaggccattagtgacaactgtgccctaaggtgtgccctgctctcagat
gtgcctgccgctgacgaccattcccactccgacaaggaggctgcaaaggctgtagcaccc
agggatgaggatgaagcatttttattcttcccactgcttaatgacgatgcctctgccatc
tataaccagaggtgctcttacacccacaccttgatgggctgctgcttcaacgtaacttct
gagcaagtccgatgtgattttgcacttgctgaacctccaccacctgtattgctgctcttt
gtcatcgccattgggcctctccaggaccctgcccaccacatggaaagctgtccggcagca
tcggtcatcacagaacaattagaagcaaatctttccaaaaataatcgagctttgagtgtt
cttcgaaggataaagagtgggagtgtagtcgccaaccgagctaaccagggcaaggaaaat
tctgaaaacatcaccacccctgaagtctttccaaggttgtaccacctgatcccagatggt
gaaattaccagcatcaagatcaatcaagtggatcccagtgaaagcctctccattatgctg
atgggaggcagtgaaaccccactggtccgtatcatccaacacatttatcatgatggggca
aatgccagagatgaccagctactaccaggagacatcatcctaaatgtcaatgggatggac
attagcaaagtctctcacaactacgctctgcatctcctgcggcagccctaccagaagttc
tgcagcaggaacagtggacaggccctggatgcctacagaccccaggatgacagctgccat
gtgatttgcaacaaaagtagccccaaggaacagcttggaataaaattggtgtgcaaggtg
gatgagcctggggtgtttatcttcaacgtgctagatggtagtgtggctgattga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_8|41_aa
MADVQYICVELTLNSARSLDKLFQPTANQKIFESTYDLEAS

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_8|126_bp
atggccgacgtgcaatacatatgtgttgaattgacattaaattcagccaggtctttagat
aaactctttcaaccaaccgccaatcagaaaatctttgaatccacctatgacctggaagcc
tcctga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_9|223_aa
MEVLARKARGDERRERVARASAATPLGHKNNSALLGTDLTEHLVGAVSSLDPGQLWPHTV
QDTVLDTGDAGVNKTDKVSALMELVLPWRREIKNKPTNASDYLMGLRTRKDTGRSTTEMI
PTPMRHRAAHRMGHSAEELPSGPFLLPPYAILLFAETSHRALPAASWLDATQPHRMVGMA
QRQAGPDMASEHQGLPCLTGQLGTNPYESNMRRKPEPEQEAET

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_9|672_bp
atggaggtgctggcgaggaaggcccgaggtgatgaaaggagggagagagttgctagagct
tctgcagcgacccccctgggacataagaacaactctgccctgctggggacggacctcaca
gagcacttggttggtgctgtgtccagcctggaccctggccagctgtggccacacacagtg
caagacactgttctggacacaggagatgcaggtgtgaacaagacagacaaggtctctgcc
cttatggagctggtgctcccatggagaagagagattaaaaacaagccaaccaatgcatca
gattatctcatgggactaagaactcggaaagacacagggcggagcaccacagaaatgatc
cccactccaatgcgtcacagagcagcccatcgcatgggtcattccgcagaagaactacct
tctggacccttccttctgccaccatatgccattctgctatttgcagagacaagccacagg
gccctgccagctgcctcctggctggatgcaacccaacctcaccgcatggtggggatggcc
cagaggcaggcgggacctgatatggcaagtgaacatcaaggcctgccttgcctcacaggg
cagctggggaccaacccatacgaatccaacatgcggaggaagccagagccggagcaggag
gcagagacctga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_10|125_aa
MSIAITTIITITTITIMTIAITTIITITTITITIITITTITIITITITIITTIIIITITT
ITITAIAITITIITITITITSPPSPSSLSPSPHHRHHHHHHHYHHHHYHHHHHHHHHHHH
DHHHH

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_10|378_bp
atgagcatcgccatcaccaccatcatcaccatcaccaccatcaccatcatgaccatcgcc
atcaccaccatcatcaccattaccaccatcaccatcaccatcattaccatcaccaccatc
accatcatcaccatcaccatcaccatcatcaccaccatcatcatcatcaccatcaccacc
atcaccatcactgccatcgccatcaccatcaccatcatcactatcaccatcaccatcaca
tcaccaccatcaccatcatcactatcaccatcgccacatcaccgccatcaccatcatcac
catcactatcaccatcatcactatcaccatcaccatcaccatcatcaccatcatcaccat
gatcatcatcaccattga

>gi568815581r:17283380_17484008|GENSCAN_predicted_peptide_11|132_aa
MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREE
ENYSFLPLVHNIIKCSLAKLCNIPLYERAVVYVNSFLLKDTVIVSAFCCWNQHCSKHLCP
CYLGELLVVSVG

>gi568815581r:17283380_17484008|GENSCAN_predicted_CDS_11|396_bp
atggcctctgctggggtggcagccgggcgacaggcggaggatgtattgccgccaacgtcc
gaccagccgctgcctgacaccaagccgctgccgcctcctcagccgccgccggtccctgcg
cctcaaccgcagcagtcgccggcgccacggcctcagtcacctgcccgcgcgagggaggaa
gagaactactcctttttacctttggttcacaacatcatcaaatgctcccttgcaaagctg
tgtaatattccactttatgaacgtgctgtcgtttatgtaaacagtttcttgctcaaggac
accgtcattgtttctgcattttgctgttggaatcagcactgcagcaagcatctttgccca
tgctatcttggtgaactcttggtagtctctgtgggg