Result of FASTA (ccds) for pF1KB3573
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3573, 536 aa
  1>>>pF1KB3573 536 - 536 aa - 536 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3637+/-0.000927; mu= 17.9452+/- 0.056
 mean_var=64.6260+/-13.259, 0's: 0 Z-trim(105.7): 14  B-trim: 481 in 2/49
 Lambda= 0.159540
 statistics sampled from 8561 (8569) to 8561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.263), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS1102.1 GBA gene_id:2629|Hs108|chr1             ( 536) 3670 853.7       0
CCDS53373.1 GBA gene_id:2629|Hs108|chr1            ( 449) 3069 715.4 3.6e-206
CCDS53374.1 GBA gene_id:2629|Hs108|chr1            ( 487) 2661 621.5 7.1e-178


>>CCDS1102.1 GBA gene_id:2629|Hs108|chr1                  (536 aa)
 initn: 3670 init1: 3670 opt: 3670  Z-score: 4561.4  bits: 853.7 E(32554):    0
Smith-Waterman score: 3670; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)

               10        20        30        40        50        60
pF1KB3 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
              430       440       450       460       470       480

              490       500       510       520       530      
pF1KB3 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
              490       500       510       520       530      

>>CCDS53373.1 GBA gene_id:2629|Hs108|chr1                 (449 aa)
 initn: 3069 init1: 3069 opt: 3069  Z-score: 3815.0  bits: 715.4 E(32554): 3.6e-206
Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 449 aa overlap (88-536:1-449)

        60        70        80        90       100       110       
pF1KB3 NATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKV
                                     ::::::::::::::::::::::::::::::
CCDS53                               MELSMGPIQANHTGTGLLLTLQPEQKFQKV
                                             10        20        30

       120       130       140       150       160       170       
pF1KB3 KGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADT
               40        50        60        70        80        90

       180       190       200       210       220       230       
pF1KB3 PDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLK
              100       110       120       130       140       150

       240       250       260       270       280       290       
pF1KB3 GQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRD
              160       170       180       190       200       210

       300       310       320       330       340       350       
pF1KB3 FIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLA
              220       230       240       250       260       270

       360       370       380       390       400       410       
pF1KB3 PAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGW
              280       290       300       310       320       330

       420       430       440       450       460       470       
pF1KB3 TDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVA
              340       350       360       370       380       390

       480       490       500       510       520       530      
pF1KB3 SQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
              400       410       420       430       440         

>>CCDS53374.1 GBA gene_id:2629|Hs108|chr1                 (487 aa)
 initn: 2661 init1: 2661 opt: 2661  Z-score: 3306.9  bits: 621.5 E(32554): 7.1e-178
Smith-Waterman score: 3254; 90.9% identity (90.9% similar) in 536 aa overlap (1-536:1-487)

               10        20        30        40        50        60
pF1KB3 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
       :::::::::::::::::::::::::::::::::::::::::::                 
CCDS53 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTG-----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB3 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
                                       ::::::::::::::::::::::::::::
CCDS53 --------------------------------IGYNIIRVPMASCDFSIRTYTYADTPDD
                                           110       120       130 

              190       200       210       220       230       240
pF1KB3 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
             140       150       160       170       180       190 

              250       260       270       280       290       300
pF1KB3 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
             200       210       220       230       240       250 

              310       320       330       340       350       360
pF1KB3 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
             260       270       280       290       300       310 

              370       380       390       400       410       420
pF1KB3 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
             320       330       340       350       360       370 

              430       440       450       460       470       480
pF1KB3 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
             380       390       400       410       420       430 

              490       500       510       520       530      
pF1KB3 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
             440       450       460       470       480       




536 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:17:41 2016 done: Sat Nov  5 12:17:41 2016
 Total Scan time:  3.350 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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