GENSCAN 1.0	Date run:  5-Nov-116	Time: 12:10:07

Sequence gi568815597f:28429867_28638004 : 208138 bp : 46.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8519   8564   46  1  1   65   97    35 0.128   2.94
 1.02 Intr +  29219  29392  174  0  0   81  100    65 0.242   6.91
 1.03 Intr +  35819  35983  165  0  0  122   82    77 0.998  10.43
 1.04 Intr +  36516  36902  387  1  0   78  111   120 0.641   8.06
 1.05 Intr +  43688  44285  598  0  1  101   84   221 0.724  14.60
 1.06 Intr +  46241  46425  185  2  2  -12   52   264 0.870  12.23
 1.07 Intr +  50585  50738  154  0  1   50   82    96 0.248   4.33
 1.08 Intr +  61822  61921  100  1  1   58   77    99 0.790   5.91
 1.09 Intr +  66454  66541   88  0  1   70   77    14 0.379  -1.96
 1.10 Term +  66668  66696   29  0  2   98   54    64 0.525   2.24
 1.11 PlyA +  67795  67800    6                               1.05

 2.00 Prom +  74576  74615   40                              -3.96
 2.01 Init +  88290  88442  153  2  0   64  100    74 0.130   4.21
 2.02 Intr +  99992 100073   82  1  1   50  110    96 0.240   7.21
 2.03 Intr + 101937 102124  188  1  2   76   96   103 0.981   9.31
 2.04 Intr + 102305 102484  180  1  0   31   90   232 0.999  17.76
 2.05 Intr + 105184 105280   97  0  1  135   94   131 0.999  17.98
 2.06 Intr + 105392 105514  123  0  0  102  123   137 0.999  19.16
 2.07 Intr + 106005 106160  156  1  0  129   85   194 0.999  23.18
 2.08 Intr + 106396 106515  120  2  0  104   97    56 0.996   8.57
 2.09 Intr + 106881 107033  153  1  0  132  101   110 0.999  16.74
 2.10 Term + 107966 108141  176  0  2  125   45   188 0.999  16.12
 2.11 PlyA + 108336 108341    6                               1.05

 3.00 Prom + 122936 122975   40                              -3.76
 3.01 Init + 123245 123271   27  1  0   76   86    40 0.576   0.97
 3.02 Intr + 123774 123871   98  2  2  101  106   173 0.979  19.21
 3.03 Intr + 130767 130866  100  0  1  102   67    27 0.991   2.11
 3.04 Intr + 131480 131532   53  1  2   91   96    67 0.993   5.51
 3.05 Intr + 134837 134968  132  2  0  119   69   153 0.999  16.26
 3.06 Intr + 137428 137547  120  1  0   70   75   120 0.994   8.51
 3.07 Intr + 141310 141472  163  1  1   79   91   241 0.999  23.48
 3.08 Intr + 142001 142034   34  1  1   99  116    59 0.999   7.60
 3.09 Term + 147634 147770  137  2  2  128   42   196 0.999  17.18
 3.10 PlyA + 148555 148560    6                              -0.45

 4.05 PlyA - 148681 148676    6                               1.05
 4.04 Term - 148814 148765   50  0  2   91   43    12 0.674  -5.53
 4.03 Intr - 149721 149667   55  0  1  106  106    52 0.851   7.35
 4.02 Intr - 150115 150046   70  0  1  107   98    29 0.823   4.98
 4.01 Init - 151286 151228   59  2  2   58   94    37 0.563   2.08
 4.00 Prom - 151366 151327   40                              -7.26

 5.00 Prom + 155874 155913   40                              -0.36
 5.01 Init + 162646 162878  233  0  2  111   80   400 0.985  39.23
 5.02 Term + 163828 164251  424  1  1  134   41   508 0.954  45.47
 5.03 PlyA + 165558 165563    6                               1.05

 6.07 PlyA - 166301 166296    6                               1.05
 6.06 Term - 173708 173673   36  2  0  120   41    39 0.652  -0.26
 6.05 Intr - 175594 175506   89  2  2  104   94    71 0.909   8.99
 6.04 Intr - 183495 183381  115  0  1  111   77   163 0.994  17.52
 6.03 Intr - 188164 188087   78  1  0   48   94   123 0.994   8.65
 6.02 Intr - 192299 192105  195  2  0   82   48   183 0.661  13.31
 6.01 Init - 194151 194080   72  0  0   66   87    42 0.687   2.97
 6.00 Prom - 195351 195312   40                              -2.56


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_1|641_aa
MGQADVSRPVNPDAVEEADQPTTEPGMVLDSVEAGDTTPPTKRKSKFSGFGKIFKPWKWR
KKKSSDKFKETSEGGEDPGKPSDAMLKNGHTTPIGNARSSSPVQVEEEPVRLASLRKAIP
EEDLKKRLGSTGSQPNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTAR
FIISTSITTAPAATTAATSLAKTVNLSVTPSPAPRTLPAAPASTNTTATPSLTHMVPAKQ
PPIPPPKPAHRNSNPVIAELSQAINSGTLLSKPSPPLPPKRGIPSTSVPTLESAAAITTK
TPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEPPRTPPFPAKTFQVVPEIEFPPS
LDLHQEIPQQEDQKKEVPKRILDQNFGEPHIPSRLPPLPLHIRIQQALTSPLPMTPILEG
SHRAHSLLFENSDSFSEDSSTLGRTRSLPITIEMLKVPDDEEEEEQTCPSTFSEEMTPTS
VIPKLPQCLREEEEKESDSDSEGPIQYRDEEDEDESYQSALANKVKRKDTLAMKLNHRPS
EPELNLNSWPCKSKEEWNEIRHQIGNTLIRKILRFNEYVEVTDAQDYDRRADKPWTKLTP
ADKCWDYRCEPLRPAEKSFKKEADEEYQMQQKATIVHDAKG

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_1|1926_bp
atgggacaagctgatgtctccagaccggtaaatccagatgcagttgaggaagcagaccag
cccactacagagccaggcatggtcctggacagtgtggaagcaggagacacaacacctcct
accaaaaggaagagcaagttctcaggctttggcaagatcttcaagccctggaaatggagg
aaaaaaaaaagtagtgataaatttaaagagacttcagaaggtggtgaggatccaggaaag
ccaagcgatgccatgttaaagaatggccataccacccccatagggaatgccagatcatct
agtccagtccaagtagaggaagagccagtaagattagcaagtcttaggaaagctattcca
gaagaggacctaaagaaacgactaggctcaactggaagccagcctaattctgaagcagag
tctgttcctgagaatgtacccaaaccacctttacttcctcccaaaagacccttgtcctct
tctcatgaagcaagtgaagggcaagcaaaggatgccacttcctctggcggcacggcaagg
ttcatcatctccacctccatcaccacagcacccgctgccaccactgctgccacaagcctt
gcaaagactgttaatctctctgtcaccccttccccagcacccaggactctgcctgctgct
cctgccagcactaacactactgctaccccaagcctcactcatatggtccctgccaagcag
ccccctatccctccccctaaaccagctcacagaaatagcaaccctgtcattgctgaactg
tcccaagcaataaacagtggtacattgttatcaaaaccgtccccacccttaccacctaag
agaggcattccatcaacctcagtacccaccttggagtctgctgctgccatcaccacaaaa
acaccaagtgatgaaagagagaagagcacgtgttctatgggctcggaactactaccaatg
atctcacctcgctctccgtcccccccactgcctactcatatacctccagagcctccacgc
acccctccattccctgctaagacttttcaagttgtgccagaaattgagtttccaccatcc
ttagatctacaccaggagattccccagcaggaagatcagaaaaaggaagtccccaagagg
atactggaccagaactttggggagccccatataccctctaggctgcctccactcccactg
catattcgaatccagcaggccctcaccagcccacttcccatgactcctattctggagggt
tctcacagagctcattcgttgctttttgaaaacagtgacagcttttctgaggacagcagt
acgctgggtcggaccaggtctcttcccatcactattgaaatgctaaaagttccagacgat
gaagaagaagaggagcaaacctgtccatccacattcagtgaagaaatgacacctacctca
gtcattcctaaattaccacagtgtctacgggaggaagaagagaaggagagcgactctgat
tcagaaggtcccattcagtaccgagatgaagaagatgaagatgaaagctatcagagtgct
ctcgccaacaaagtgaagaggaaagacacactggcaatgaagttgaaccacagacccagt
gaaccagagttgaacctgaattcttggccttgtaaaagcaaggaggagtggaatgaaata
cggcaccagattggaaacacactgatccggaagattctgaggtttaatgaatatgtagag
gtaacagatgctcaagattatgaccggcgagccgacaaaccttggaccaaactgacccct
gctgacaagtgctgggattacaggtgtgaaccattgcgcccagccgagaagagttttaag
aaggaagcagatgaggagtatcagatgcaacagaaagctaccatcgtccatgatgccaaa
ggttga

>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_2|475_aa
MQILGWPPGAAGLFVFLSHPGRGQRPAERMLWGSSRPGGERRSSLWPTCTKDRKMSPKRI
AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP
EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA
GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVM
LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF
CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT
VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRV
FAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_2|1428_bp
atgcagatcctgggatggccgccaggggccgccgggctctttgttttcctttctcacccg
ggtcggggccagaggcctgcagagcgcatgctctggggcagttcgcggcccggcggggag
cgccggagttccttgtggccgacgtgcaccaaggacaggaagatgtcacccaagcgcata
gctaaaagaaggtcccccccagcagatgccatccccaaaagcaagaaggtgaaggtctca
cacaggtcccacagcacagaacccggcttggtgctgacactaggccagggcgacgtgggc
cagctggggctgggtgagaatgtgatggagaggaagaagccggccctggtatccattccg
gaggatgttgtgcaggctgaggctgggggcatgcacaccgtgtgtctaagcaaaagtggc
caggtctattccttcggctgcaatgatgagggtgccctgggaagggacacatcagtggag
ggctcggagatggtccctgggaaagtggagctgcaagagaaggtggtacaggtgtcagca
ggagacagtcacacagcagccctcaccgatgatggccgtgtcttcctctggggctccttc
cgggacaataacggtgtgattggactgttggagcccatgaagaagagcatggtgcctgtg
caggtgcagctggatgtgcctgtggtaaaggtggcctcaggaaacgaccacttggtgatg
ctgacagctgatggtgacctctacaccttgggctgcggggaacagggccagctaggccgt
gtgcctgagttatttgccaaccgtggtggccggcaaggcctcgaacgactcctggtcccc
aagtgtgtgatgctgaaatccaggggaagccggggccacgtgagattccaggatgccttt
tgtggtgcctatttcacctttgccatctcccatgagggccacgtgtacggcttcggcctc
tccaactaccatcagcttggaactccgggcacagaatcttgcttcataccccagaaccta
acatccttcaagaattccaccaagtcctgggtgggcttctctggtggccagcaccataca
gtctgcatggattcggaaggaaaagcatacagcctgggccgggctgagtatgggcggctg
ggccttggagagggtgctgaggagaagagcatacccaccctcatctccaggctgcctgct
gtctcctcggtggcttgtggggcctctgtggggtatgctgtgaccaaggatggtcgtgtt
ttcgcctggggcatgggcaccaactaccagctgggcacagggcaggatgaggacgcctgg
agccctgtggagatgatgggcaaacagctggagaaccgtgtggtcttatctgtgtccagc
gggggccagcatacagtcttattagtcaaggacaaagaacagagctga

>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_3|287_aa
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_3|864_bp
atggcggccagcctgtggatgggcgacctggaaccctacatggatgagaacttcatctcc
agagcctttgccaccatgggggagaccgtaatgagcgtcaaaattatccgaaaccgcctc
actgggatcccagctggctactgctttgtagaatttgcagatttggccacagctgagaag
tgtttgcataaaattaatgggaaaccccttccaggagccacacctgcgaaacgttttaaa
ctgaactatgccacttacgggaaacaaccagataacagccctgagtattccctctttgtg
ggggacctgaccccggacgtggatgatggcatgctgtatgaattcttcgtcaaagtctac
ccctcctgtcggggaggcaaggtggttttggaccagacaggcgtgtctaagggttatggt
tttgtgaaattcacagatgaactggaacagaagcgagccctgacggagtgccagggagca
gtgggactggggtctaagcctgtgcggctgagcgtggcaatccctaaagcgagccgtgta
aagccagtggaatatagtcagatgtacagttatagctacaaccagtattatcagcagtac
cagaactactatgctcagtggggctatgaccagaacacaggcagctacagctacagttac
ccccagtatggctatacccagagcaccatgcagacatatgaagaagttggagatgatgca
ttggaagaccccatgccacagctggatgtgactgaggccaacaaggagttcatggaacag
agtgaggagctgtatgacgctctgatggactgtcactggcagcccctggacacagtgtct
tcagagatccctgccatgatgtag

>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_4|77_aa
MTDLVYRDPGVLKQVVMMDRLPPSFLAVCDTEEVSLFLELCFKIHVTCKAVLICDYGPME
LGQSLWEAEGKDPGHFR

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_4|234_bp
atgactgacttagtctacagagatcccggcgtacttaagcaggtagtaatgatggacagg
ttgcccccaagtttcctggcagtgtgtgatactgaggaggtgagcttgtttctggagctg
tgctttaagattcatgttacatgtaaagctgtcctcatttgtgactatggacctatggag
ttgggacaatctctatgggaagcagaaggcaaggaccccggtcattttaggtag

>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_5|218_aa
MEAEGCRYQFRVALLGDAAVGKTSLLRSYVAGAPGAPEPEPEPEPTVGAECYRRALQLRA
GPRVKLQLWDTAGHERFRCITRSFYRNVVGVLLVFDVTNRKSFEHIQDWHQEVMATQGPD
KVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQA
LQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_5|657_bp
atggaggccgagggctgccgctaccaatttcgggtcgcgctgctgggggacgcggcggtg
ggcaagacgtcgctgctgcggagctacgtggcaggcgcgcctggcgccccggagccggag
cccgagcccgagcccacggtgggcgccgagtgctaccgccgcgcgctgcagctgcgggcc
gggccgcgggtcaagctgcaactctgggacaccgcgggccacgagcgcttcaggtgcatc
accaggtccttttaccggaatgtggtgggtgtcctgctggtctttgatgtgacaaacagg
aagtcctttgaacacatccaagactggcaccaggaggtcatggccactcagggcccggac
aaggtcatcttcctgctggttggccacaagagtgacctgcagagcacccgctgtgtctca
gcccaggaggccgaggagctagctgcctccctgggcatggccttcgtggagacctcggtt
aaaaacaactgcaatgtggacctggcctttgacaccctcgctgatgctatccagcaggcc
ctgcagcagggggacatcaagctagaagagggctgggggggtgtccggctcatccacaag
acccaaatccccaggtcccccagcaggaagcagcactcaggcccatgccagtgttga

>gi568815597f:28429867_28638004|GENSCAN_predicted_peptide_6|194_aa
MAASHFTGLTAVADVIKDLDTQIALIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSA
LINLSNFSSIKPEPASTPPQGSMANSTAVVLTKKKLQDLVREVDPNEQLDEDVEEMLLQI
ADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEA
HKQRMALIRKTTKK

>gi568815597f:28429867_28638004|GENSCAN_predicted_CDS_6|585_bp
atggctgcctctcatttcaccgggctcacagctgttgctgatgtaattaaagatctagac
actcagatagctttaattggccttggtcctcacagctccaaaaagaaacaggatctcgat
aagctctatgagctgaagtccaaagctcggcagattatgaaccagtttggcccctcagcc
ctaatcaacctctccaatttctcatccataaaaccggaaccagccagcacccctccacaa
ggctccatggccaatagtactgcagtggtattgaccaagaagaaattacaggacttagta
agagaagtggatcctaatgagcagttggatgaagatgtggaggagatgctgctgcagatt
gctgatgattttatcgagagtgtggtgacagcagcctgtcagcttgcgcggcatcgcaag
tctagcaccctggaggtgaaagatgtccagctgcatttagagcgccagtggaacatgtgg
atcccaggatttggctctgaagaaatccgaccctacaaaaaagcttgcaccacagaagct
cacaaacagagaatggcattgatccggaaaacaaccaagaaataa