FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6934, 219 aa
  1>>>pF1KB6934 219 - 219 aa - 219 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6235+/-0.00028; mu= 8.3273+/- 0.018
 mean_var=101.4736+/-20.221, 0's: 0 Z-trim(122.3): 4  B-trim: 1416 in 1/52
 Lambda= 0.127320
 statistics sampled from 40190 (40194) to 40190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.471), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
NP_004322 (OMIM: 605368) BCL2/adenovirus E1B 19 kD ( 219) 1488 282.7 3.2e-76
NP_001317420 (OMIM: 605368) BCL2/adenovirus E1B 19 ( 179) 1194 228.7 4.9e-60
NP_004043 (OMIM: 603293) BCL2/adenovirus E1B 19 kD ( 259)  723 142.2 7.4e-34


>>NP_004322 (OMIM: 605368) BCL2/adenovirus E1B 19 kDa pr  (219 aa)
 initn: 1488 init1: 1488 opt: 1488  Z-score: 1489.3  bits: 282.7 E(85289): 3.2e-76
Smith-Waterman score: 1488; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MSSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PSSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EEEVVEGEKEVEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEEVVEGEKEVEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGI
              130       140       150       160       170       180

              190       200       210         
pF1KB6 FSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
       :::::::::::::::::::::::::::::::::::::::
NP_004 FSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
              190       200       210         

>>NP_001317420 (OMIM: 605368) BCL2/adenovirus E1B 19 kDa  (179 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1198.8  bits: 228.7 E(85289): 4.9e-60
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 179 aa overlap (41-219:1-179)

               20        30        40        50        60        70
pF1KB6 PLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGD
                                     ::::::::::::::::::::::::::::::
NP_001                               MNSSNGNDNGNGKNGGLEHVPSSSSIHNGD
                                             10        20        30

               80        90       100       110       120       130
pF1KB6 MEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKE
               40        50        60        70        80        90

              140       150       160       170       180       190
pF1KB6 VEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFI
              100       110       120       130       140       150

              200       210         
pF1KB6 PSLFLSHVLALGLGIYIGKRLSTPSASTY
       :::::::::::::::::::::::::::::
NP_001 PSLFLSHVLALGLGIYIGKRLSTPSASTY
              160       170         

>>NP_004043 (OMIM: 603293) BCL2/adenovirus E1B 19 kDa pr  (259 aa)
 initn: 606 init1: 446 opt: 723  Z-score: 728.8  bits: 142.2 E(85289): 7.4e-34
Smith-Waterman score: 723; 62.4% identity (84.0% similar) in 194 aa overlap (32-219:79-259)

              10        20        30        40        50        60 
pF1KB6 SSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVP
                                     :..::::: . :.:::       ::   ::
NP_004 HPAARRGLRSPQLPSGAMSQNGAPGMQEESLQGSWVELHF-SNNGN-------GG--SVP
       50        60        70        80         90                 

              70        80        90           100       110       
pF1KB6 SSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDH
       .: ::.::::::::::::::::.:::. :::::::    .::. ..   ... :. .. .
NP_004 ASVSIYNGDMEKILLDAQHESGRSSSK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKN
      100       110       120        130       140        150      

        120       130        140       150       160       170     
pF1KB6 SSQSEEEVVEGEKEVEA-LKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAM
       ::::::. .: .::::. :::..::. :::::::::::::: :.::::...::::....:
NP_004 SSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVM
        160       170       180       190       200       210      

         180       190       200       210         
pF1KB6 KKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
       ::::::::::::::.:::.:::.::.:::::::.::.: :.::.
NP_004 KKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTT-STSTF
        220       230       240       250          




219 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:57:10 2016 done: Sat Nov  5 11:57:11 2016
 Total Scan time:  7.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]