Result of FASTA (omim) for pF1KB6679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6679, 427 aa
  1>>>pF1KB6679 427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7084+/-0.000365; mu= 16.2481+/- 0.023
 mean_var=114.5989+/-24.078, 0's: 0 Z-trim(115.4): 125  B-trim: 0 in 0/53
 Lambda= 0.119807
 statistics sampled from 25717 (25861) to 25717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.303), width:  16
 Scan time:  9.070

The best scores are:                                      opt bits E(85289)
NP_000098 (OMIM: 278740,600811) DNA damage-binding ( 427) 2966 523.9  3e-148
NP_001287663 (OMIM: 278740,600811) DNA damage-bind ( 238) 1061 194.4 2.7e-49
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357)  224 49.9 1.3e-05
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655)  219 49.3 3.5e-05
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655)  219 49.3 3.5e-05
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655)  219 49.3 3.5e-05
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658)  219 49.3 3.5e-05
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672)  219 49.3 3.5e-05
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672)  219 49.3 3.5e-05
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672)  219 49.3 3.5e-05
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675)  219 49.3 3.5e-05
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675)  219 49.3 3.5e-05
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675)  219 49.3 3.5e-05
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675)  219 49.3 3.5e-05
XP_011527969 (OMIM: 601475) PREDICTED: periodic tr ( 734)  194 45.0 0.00075
NP_005040 (OMIM: 601475) periodic tryptophan prote ( 919)  194 45.1 0.00087
NP_001290177 (OMIM: 609540) WD repeat-containing p ( 212)  171 40.5   0.005
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  171 40.6  0.0061
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  171 40.6  0.0061
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521)  171 40.9  0.0093
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522)  171 40.9  0.0093


>>NP_000098 (OMIM: 278740,600811) DNA damage-binding pro  (427 aa)
 initn: 2966 init1: 2966 opt: 2966  Z-score: 2782.5  bits: 523.9 E(85289): 3e-148
Smith-Waterman score: 2966; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
              370       380       390       400       410       420

              
pF1KB6 EEARTRK
       :::::::
NP_000 EEARTRK
              

>>NP_001287663 (OMIM: 278740,600811) DNA damage-binding   (238 aa)
 initn: 1650 init1: 1061 opt: 1061  Z-score: 1006.1  bits: 194.4 E(85289): 2.7e-49
Smith-Waterman score: 1276; 55.7% identity (55.7% similar) in 427 aa overlap (1-427:1-238)

               10        20        30        40        50        60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
       ::::::::::::::::::::::::::::::::                            
NP_001 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
                                                :::::::::::::::::::
NP_001 -----------------------------------------AAWHPRYNLIVVGRYPDPN
                                                     160       170 

              370       380       390       400       410       420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
             180       190       200       210       220       230 

              
pF1KB6 EEARTRK
       :::::::
NP_001 EEARTRK
              

>>NP_004805 (OMIM: 607797) U5 small nuclear ribonucleopr  (357 aa)
 initn: 144 init1:  70 opt: 224  Z-score: 222.0  bits: 49.9 E(85289): 1.3e-05
Smith-Waterman score: 232; 24.0% identity (52.3% similar) in 367 aa overlap (59-410:9-345)

       30        40        50        60        70        80        
pF1KB6 ELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSV-Q
                                     ::..  :   . :  :.  :: .: :.. :
NP_004                       MIEQQKRKGPEL--PLVPVKRQRHELLLGAGSGPGAGQ
                                     10          20        30      

        90       100          110       120       130         140  
pF1KB6 QGLQQSFLHTLDSYRILQKAAP---FDRRATSLAWHPTHPSTVAVGSKGGD--IMLWN-F
       :    . :      :  .  ::   .. .   .     ::.  ...: : :  :.::: .
NP_004 QQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY
         40        50        60        70        80        90      

             150       160       170       180        190       200
pF1KB6 GIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILRVFASSDTI
       :  :. . .::   .:..  :..:  ..  : ::. . ..  ..  :. . :. . .. .
NP_004 GDCDNYATLKG--HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV
        100         110       120       130       140       150    

              210       220       230       240       250       260
pF1KB6 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT
       :   :   .  . ..: ::.. :.: : ..  :   .  ..  .:  :..:   : .. .
NP_004 N--SC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII-S
             160       170       180       190       200        210

              270       280        290       300       310         
pF1KB6 ASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVYS---
       ...:. .:.::::: .    . :..  :   :..  .: .:. ::.. . . .::..   
NP_004 GGIDNDIKVWDLRQNK----LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRP
              220           230       240       250       260      

         320       330       340       350       360       370     
pF1KB6 -ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF
        : .  :   .  . :   ..:  .. .: :  . :..:   :           : . :.
NP_004 FAPKERCVKIFQGNVHNFEKNL--LRCSWSPDGSKIAAGS-AD-----------RFVYVW
        270       280         290       300                   310  

         380       390         400       410       420       
pF1KB6 DGNSGKMMCQLYDPESSGISSLNE--FNPMGDTLASAMGYHILIWSQEEARTRK
       : .: ... .:  :  .:  :.::  :.:    . ::                 
NP_004 DTTSRRILYKL--PGHAG--SINEVAFHPDEPIIISASSDKRLYMGEIQ     
            320           330       340       350            

>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin   (655 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.1  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_016                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin   (655 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.1  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_016                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea  (655 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.1  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
NP_005                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
NP_005 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
NP_005 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
NP_005 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
NP_005 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>XP_006721186 (OMIM: 602703,616212) PREDICTED: katanin   (658 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.1  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_006                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_006 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_006 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_006 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_006 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>XP_016878350 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.0  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_016                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>XP_005255829 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.0  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_005                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_005 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_005 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_005 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_005 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         

>>XP_016878351 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 166 init1:  80 opt: 219  Z-score: 214.0  bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)

            80        90       100       110       120       130   
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
                                     ::. .     ..::.   .    .:.:.  
XP_016                   MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
                                 10        20        30        40  

           140       150        160       170       180        190 
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
         . ::..   .::. : .. :  . . ....:    . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
             50           60        70         80        90        

             200       210       220       230        240       250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
       :.. .  . ::  ::::    ...:..:..  :. : ..  :  ..  : :.. :  . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
      100          110       120       130       140       150     

              260       270       280        290       300         
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
       .:   : ::.:. :.:::.:::    ::  ..  .: :  :::.. : :.   : . .. 
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
         160        170         180         190       200       210

     310       320          330       340       350       360      
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
         :: ..  ...   :  :  : : :                                  
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
              220       230        240       250       260         




427 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:44:02 2016 done: Sat Nov  5 11:44:03 2016
 Total Scan time:  9.070 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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