FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6640, 442 aa
  1>>>pF1KB6640 442 - 442 aa - 442 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0533+/-0.000912; mu= 14.1270+/- 0.055
 mean_var=80.9142+/-15.479, 0's: 0 Z-trim(106.0): 10  B-trim: 0 in 0/52
 Lambda= 0.142581
 statistics sampled from 8744 (8748) to 8744 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.269), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS3895.1 C5orf22 gene_id:55322|Hs108|chr5        ( 442) 2962 619.1 2.7e-177


>>CCDS3895.1 C5orf22 gene_id:55322|Hs108|chr5             (442 aa)
 initn: 2962 init1: 2962 opt: 2962  Z-score: 3296.4  bits: 619.1 E(32554): 2.7e-177
Smith-Waterman score: 2962; 99.8% identity (99.8% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KB6 MSDSAGGRAGLRRYPKLPVWVVEDHQEVLPFIYRAIGSKHLPASNVSFLHFDSHPDLLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSDSAGGRAGLRRYPKLPVWVVEDHQEVLPFIYRAIGSKHLPASNVSFLHFDSHPDLLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VNMPADTVFDKETLFGELSIENWIMPAVYAGHFSHVIWFHPTWAQQIREGRHHFLVGKDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VNMPADTVFDKETLFGELSIENWIMPAVYAGHFSHVIWFHPTWAQQIREGRHHFLVGKDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 STTTIRVTSTDHYFLSDGLYVPEDQLENQKPLQLDVIMVKPYKLCNNQEENDAVSSAKKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 STTTIRVTSTDHYFLSDGLYVPEDQLENQKPLQLDVIMVKPYKLCNNQEENDAVSSAKKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KLALEDSENTASTNCDSSSEGLEKDTATQRSDQTCLEPSCSCSSENQECQTAASPGEILE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS38 KLALEDSENTASTNCDSSSEGLEKDTATQRSDQTCLEPSCSCSSENQECQTAASTGEILE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ILKKGKAFVLDIDLDFFSVKNPFKEMFTQEEYKILQELYQFKKPGTNLTEEDLVDIVDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ILKKGKAFVLDIDLDFFSVKNPFKEMFTQEEYKILQELYQFKKPGTNLTEEDLVDIVDTR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 IHQLEDLEATFADLCDGDDEETVQRWASNPGMESLVPLVQSLKKRMEVPDYEMVHQAGLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IHQLEDLEATFADLCDGDDEETVQRWASNPGMESLVPLVQSLKKRMEVPDYEMVHQAGLT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 CDYSELPHHISTEQEIECLIQSVHYLLKNLPNPTLVTIARSSLDDYCPSDQVDTIQEKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 CDYSELPHHISTEQEIECLIQSVHYLLKNLPNPTLVTIARSSLDDYCPSDQVDTIQEKVL
              370       380       390       400       410       420

              430       440  
pF1KB6 NMLRALYGNLDLQVYAAESPPS
       ::::::::::::::::::::::
CCDS38 NMLRALYGNLDLQVYAAESPPS
              430       440  




442 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:38:34 2016 done: Sat Nov  5 11:38:34 2016
 Total Scan time:  2.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]