FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6606, 431 aa
  1>>>pF1KB6606 431 - 431 aa - 431 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0091+/-0.000683; mu= 15.3574+/- 0.042
 mean_var=87.0996+/-17.222, 0's: 0 Z-trim(112.1): 5  B-trim: 0 in 0/53
 Lambda= 0.137425
 statistics sampled from 12893 (12897) to 12893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS12262.1 ECSIT gene_id:51295|Hs108|chr19        ( 431) 2981 600.4 1.1e-171
CCDS45980.1 ECSIT gene_id:51295|Hs108|chr19        ( 296) 1834 372.9 2.3e-103
CCDS59353.1 ECSIT gene_id:51295|Hs108|chr19        ( 296) 1826 371.3 6.9e-103
CCDS45979.1 ECSIT gene_id:51295|Hs108|chr19        ( 217) 1304 267.8 7.6e-72


>>CCDS12262.1 ECSIT gene_id:51295|Hs108|chr19             (431 aa)
 initn: 2981 init1: 2981 opt: 2981  Z-score: 3195.8  bits: 600.4 E(32554): 1.1e-171
Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 YYHILRADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YYHILRADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 MAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEED
              370       380       390       400       410       420

              430 
pF1KB6 DNLQRQQQGQS
       :::::::::::
CCDS12 DNLQRQQQGQS
              430 

>>CCDS45980.1 ECSIT gene_id:51295|Hs108|chr19             (296 aa)
 initn: 1855 init1: 1834 opt: 1834  Z-score: 1969.3  bits: 372.9 E(32554): 2.3e-103
Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
       ::::::::::::::::::::::::::                                  
CCDS45 RVTIYQVPLPKDSTGAADPPQPHIVGSGRDAGGVEPLLPDAAGPGVCEEWLGQLRV    
              250       260       270       280       290          

>>CCDS59353.1 ECSIT gene_id:51295|Hs108|chr19             (296 aa)
 initn: 1826 init1: 1826 opt: 1826  Z-score: 1960.7  bits: 371.3 E(32554): 6.9e-103
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
       :::::::::::::::::::::::::                                   
CCDS59 RVTIYQVPLPKDSTGAADPPQPHIVELTCCPRRRGKWKRRRRSGTSTTRCSWTWSM    
              250       260       270       280       290          

>>CCDS45979.1 ECSIT gene_id:51295|Hs108|chr19             (217 aa)
 initn: 1304 init1: 1304 opt: 1304  Z-score: 1403.4  bits: 267.8 E(32554): 7.6e-72
Smith-Waterman score: 1304; 98.9% identity (99.5% similar) in 189 aa overlap (243-431:29-217)

            220       230       240       250       260       270  
pF1KB6 FPVPRDLPQDPVELAMFGLRHMEPDLSARVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQ
                                     .: :::::::::::::::::::::::::::
CCDS45   MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPLPKDSTGAADPPQPHIVGIQSPDQ
                 10        20        30        40        50        

            280       290       300       310       320       330  
pF1KB6 QAALARHNPARPVFVEGPFSLWLRNKCVYYHILRADLLPPEEREVEETPEEWNLYYPMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAALARHNPARPVFVEGPFSLWLRNKCVYYHILRADLLPPEEREVEETPEEWNLYYPMQL
       60        70        80        90       100       110        

            340       350       360       370       380       390  
pF1KB6 DLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFR
      120       130       140       150       160       170        

            400       410       420       430 
pF1KB6 LAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQS
       :::::::::::::::::::::::::::::::::::::::
CCDS45 LAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQS
      180       190       200       210       




431 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:33:01 2016 done: Sat Nov  5 11:33:02 2016
 Total Scan time:  2.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]