GENSCAN 1.0	Date run:  5-Nov-116	Time: 11:20:44

Sequence gi568815592r:55655536_55974865 : 319330 bp : 34.90% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    625    620    6                               1.05
 1.01 Sngl -  25342  25037  306  1  0   86   43   223 0.935  13.22
 1.00 Prom -  28570  28531   40                              -5.85

 2.00 Prom +  28693  28732   40                              -6.85
 2.01 Sngl +  30299  30649  351  1  0   49   37   340 0.980  20.80
 2.02 PlyA +  30907  30912    6                               1.05

 3.00 Prom +  31166  31205   40                             -10.45
 3.01 Sngl +  31403  31999  597  1  0   44   43   256 0.850  12.64
 3.02 PlyA +  32067  32072    6                              -1.75

 4.00 Prom +  32075  32114   40                             -10.05
 4.01 Sngl +  32714  34336 1623  1  0   37   48   391 0.844  25.05
 4.02 PlyA +  34371  34376    6                              -0.45

 5.00 Prom +  34667  34706   40                              -3.95
 5.01 Init +  38812  38872   61  0  1   84   37    43 0.001   0.26
 5.02 Intr +  55890  56193  304  1  1   74   83   188 0.231  11.62
 5.03 Term +  60231  60369  139  0  1   98   32    67 0.749  -1.45
 5.04 PlyA +  60410  60415    6                               1.05

 6.00 Prom +  71317  71356   40                              -5.45
 6.01 Init +  81030  81199  170  2  2   88   86   109 0.708   9.75
 6.02 Intr +  81526  81718  193  1  1    2   91   105 0.328   0.77
 6.03 Term +  84618  85217  600  2  0   75   43   172 0.516   4.94
 6.04 PlyA +  86143  86148    6                               1.05

 7.09 PlyA -  86365  86360    6                               1.05
 7.08 Term - 100147  99998  150  1  0  111   34    72 0.324   1.03
 7.07 Intr - 103580 103470  111  2  0   45  107    37 0.420   0.96
 7.06 Intr - 104998 104922   77  2  2   69   91    50 0.601   1.72
 7.05 Intr - 114918 114701  218  2  2   32   65   185 0.215   7.82
 7.04 Intr - 118193 118166   28  0  1   42   99    12 0.239  -6.04
 7.03 Intr - 118708 118514  195  2  0   99   94   168 0.422  16.96
 7.02 Intr - 138892 138744  149  0  2  143  103    87 0.978  14.66
 7.01 Init - 144226 144159   68  1  2   69   10    55 0.343  -3.60
 7.00 Prom - 144418 144379   40                              -7.35

 8.00 Prom + 144992 145031   40                              -6.05
 8.01 Init + 146508 146775  268  2  1   80  100   143 0.923  11.89
 8.02 Term + 148168 148286  119  2  2   23   54   147 0.514   2.52
 8.03 PlyA + 148492 148497    6                               1.05

 9.07 PlyA - 148531 148526    6                               1.05
 9.06 Term - 152671 152551  121  0  1  114   34   103 0.480   4.47
 9.05 Intr - 164312 164120  193  0  1   87   43   247 0.711  17.73
 9.04 Intr - 219139 218841  299  0  2   77   77   259 0.825  19.29
 9.03 Intr - 244148 244092   57  1  0   66   98    53 0.085   1.18
 9.02 Intr - 246659 246553  107  2  2   61  111    47 0.203   2.39
 9.01 Init - 248772 248641  132  0  0   63   37    97 0.355   2.29
 9.00 Prom - 272546 272507   40                              -3.65

10.08 PlyA - 273376 273371    6                               1.05
10.07 Term - 284752 284477  276  1  0  -25   44   417 0.647  20.48
10.06 Intr - 285105 284952  154  2  1   60  115   118 0.109  10.85
10.05 Intr - 296173 296037  137  1  2   48   74   102 0.390   3.25
10.04 Intr - 296327 296294   34  1  1  129   60    36 0.848   2.21
10.03 Intr - 300381 300269  113  0  2  106   45   105 0.934   6.26
10.02 Intr - 301093 301003   91  0  1   38   66    72 0.018  -0.92
10.01 Intr - 310824 310749   76  1  1   69  116    82 0.441   6.75

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  38930  38748  183  2  0   39   45   152 0.973   2.56
S.002 Init -  40252  40205   48  1  0   67   89    75 0.920   6.50
S.003 Init + 255393 255530  138  2  0   97   91    46 0.842   5.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_1|101_aa
MRFKTSGCSSAVASSPLATDRVKKNMIEEAYTLKNTDITKEPCLPPVKLPAPCWLRMQLR
PLGWLQTKIRTRERRGGEEMCPPRSLKPATPAVCPPAVQSP

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_1|306_bp
atgaggtttaaaacatctggctgcagttctgcagttgcctccagcccgttagccactgac
cgggtgaaaaagaatatgatagaggaagcctataccctcaaaaacacagacatcaccaag
gagccctgccttcctcctgtgaaactgcctgctccatgctggctgaggatgcaactaagg
ccacttggctggttacaaactaaaataaggacccgagaaaggagaggtggagaagaaatg
tgccctccgagaagccttaagccggccacaccagctgtttgcccacctgctgtgcagtca
ccttag

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_2|116_aa
MELKTKARELREECRSLRSQCDQLEERVSAMEDEINEMKREGKFREKRIKSNEQSLQEIW
VYVKRPNLRLIGVPESDGENGTKLENNLQDIMQENFPNLARQANIQIQEIQRMPQR

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_2|351_bp
atggagctgaaaaccaaggctcgagaactacgtgaagaatgcagaagcctcaggagccaa
tgcgatcaactggaagaaagggtatcagcgatggaagatgaaattaatgaaatgaagcga
gaagggaaatttagagaaaagagaataaaaagtaacgagcaaagcctccaagaaatatgg
gtctatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacggggagaat
ggaaccaagttggaaaacaatctgcaggatattatgcaggagaacttccccaatctagca
aggcaggccaacattcaaattcaggaaatacagagaatgccacaaagatag

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_3|198_aa
MVKGSIQQEELTILNIDAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSMR
QKVNKDTQELNSALHQVDLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHILGSKALLSKCK
RTGIVTNYLSDHSAIKLELRIKKLTQNRSAIWKLNNLLLNDYWVHNEMKAEIKMFFETNE
NKDATYQNLRDAFKAVCR

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_3|597_bp
atggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaat
acaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcc
cacacattaataatgggagactttaacaccccactgtcaacattagacagatcaatgaga
cagaaagtcaacaaggatacccaggaattgaactcagctctgcaccaagtggacctaata
gacatctacagaactctccaccccaaatcaacagaatatacatttttttcagcaccacac
cacacctattccaaaattgaccacatacttggaagtaaagctctcctcagcaaatgtaaa
agaacaggaattgtaacaaactatctctcagaccacagtgcaatcaaactagaactcagg
attaagaaactcactcaaaaccgctcagctatatggaaactgaacaacctgctcctgaat
gactactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgag
aacaaagacgcaacataccagaatctaagggatgcattcaaagcagtgtgtagatag

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_4|540_aa
MNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHM
IISVDAEKAFDKIQQPFMLKTINKLGIDGTYFKIIRAIYDKPTTNIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKQEVKLSLFVDDMIVYLENPIVSA
QNLLKLISNFSKVSGYKISVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIPLTR
DVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILSKVIYRFNAIPIKLPMT
SFTELEKTTLKFIWNQKRAHIPKSILSQKNKAGGITLPDFKLYYKAIVTKTAWYWYQNRD
IDQWNRTEPSEITPLIYNYLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTP
YTKINSRWIKDLHVRPETIKTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIK
LKSFCTAKETTIRVNRQPTKLEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKNGRRI

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_4|1623_bp
atgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat
atacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatg
attatctcagtagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaa
actataaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgac
aaacccacaaccaacatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg
gccagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaacaggaagtc
aaattgtccctgtttgtagacgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcagtgta
caaaaatcacaagcattcttatacaccaacaacagacaaacagagagccaaatcatgagt
gaactcccattcacaattgcttcaaagagaataaaatacctaggaatcccacttacaagg
gacgtgaaggacctcttcaaggagaactacaaaccacttctgaaggaaataaaagaggat
acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatg
gccatactgtccaaggtaatttacagattcaatgccatccccattaagctaccaatgact
tccttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagggcccac
atccccaagtcaatcctaagccaaaagaacaaagctggaggaatcacactacctgacttc
aaactatactacaaggcaatagtaaccaaaacagcatggtactggtaccaaaacagagat
atagatcaatggaacagaacagagccctcagaaatcacgccgcttatctacaactatctg
atctttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatgg
tgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacacct
tatacaaaaatcaattcaagatggattaaagacttacatgttagacctgaaaccataaaa
accctagaagaaaacctaggcattaccattcaagacataggcatgggcaaggacttcatg
tctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaa
ctaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaa
ttggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaat
gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaatgggcgaaggata
tga

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_5|167_aa
MPSNRPQECKSSTKPRVELAGEKKRHIGRSWNDLVALGYNVFNCLRWEDRQKLYVQGPVA
RGMITKSNGLKRQIISTLESEEADETGEVSRYQITGACQQFNEVNLYPKDTGKSLRDFYA
ISSSAMVSVSVLHVWPMTILLPVWPKKAKRLDTPEVKYIPFYFRPVN

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_5|504_bp
atgccgagcaacaggccacaggaatgcaaatcatccacaaagccaagagtggagctagca
ggagaaaagaagaggcacataggaagatcctggaatgacctagtggccttgggctataac
gtattcaactgtctgaggtgggaagacaggcagaaactatacgtgcaaggccctgtggcc
agaggaatgatcactaaaagcaatggattgaaaaggcagataatctcaactttagaaagt
gaagaagcagatgagactggagaggtatcaaggtaccagatcacaggggcttgtcagcaa
tttaatgaagttaatctttatcctaaggacaccgggaagtcactgagagatttttatgca
ataagctcatcagcaatggttagtgttagtgtacttcatgtgtggcccatgacaattctt
cttcccgtgtggcccaaaaaagccaaaagattggacacccctgaagtgaaatatattccc
ttttattttagaccagttaactaa

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_6|320_aa
MGKKQSRKTGNSKNQSASPPPKECSSSPATEQRWMENDFDELREEGFRRSNYSKLKYDGE
NGTKLENTLQDITQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEK
MNWKKKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYCKATVNKTAWYWYQNRVI
NQCNRTEPSEIMRYIYNYLIFDKPEKNKKWGKDSLLNNWCWENWLAICRTLKLDPFLIPY
TKINSRWIKDLHVRPKTIKTLEENLGNTIQDIGMGKDFMSETPKAMATKAKIDKWDLIKL
KSFCTAKETTIRVNRQPTEW

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_6|963_bp
atggggaaaaaacagagcagaaaaacaggaaactctaaaaatcagagcgcctctcctcct
ccaaaggaatgcagctcctcaccagcaacagaacaaagatggatggagaatgactttgat
gagttgagagaagaaggcttcagaagatcaaactactccaagctaaagtatgacggggag
aatggaaccaagttggaaaacaccctgcaggatattacccaggagaacttccccaatcta
gcaaggcaggccaacattcagattcaggaaatacagagaatgccacaaagatactcctcg
agaagagcaactccaagacacataatcgtcagattcaccaaagttgaaatgaaggaaaaa
atgaattggaaaaaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatt
gccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaa
ctatactgcaaggctacagtaaacaaaacagcatggtactggtaccaaaacagagttata
aaccaatgtaacagaacagagccctcagaaataatgcggtacatctacaactatctgatc
tttgacaaacctgagaaaaacaagaaatggggaaaggattccctattgaataactggtgc
tgggaaaactggctagccatatgtagaacgctgaaactggatccctttcttataccttac
acaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaaacc
ctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtct
gaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacta
aagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgg
tag

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_7|331_aa
MVDSHTITQGAEMVQKGAVGQLKDADLFLLDTRKAQALDVGWLVFDITVTSNHWVINPQN
NLGLQLCAETGDGRSINVKSAGLVGRQGPQSKQPFMVAFFKASEVLLRSVRAANKRKNQN
RNKSSSHQDSSRMSSVGGPFKNGWSTSLIQSKALILLNSMKAERAEEAAEEKSESSRYWF
MTFKERSCLHSKKVQGETASIDEEAIASYPGDLSKITDEDYNTSEQKQACKKHELYVSFR
DLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQTLVHLMFPDHVPKPCCAPTK
LNAISVLYFDDSSNVILKKYRNMVVRSCGCH

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_7|996_bp
atggtggattcccacaccatcacccagggagcagagatggttcagaagggagctgtagga
caattgaaggatgcagatctgttcttgttagacacaagaaaggcccaagctttagatgtg
ggttggcttgtctttgatatcactgtgaccagcaatcattgggtgattaatccccagaat
aatttgggcttacagctctgtgcagaaacaggggatggacgcagtatcaacgtaaaatct
gctggtcttgtgggaagacagggacctcagtcaaaacaaccattcatggtggccttcttc
aaggcgagtgaggtacttcttcgatccgtgagagcagccaacaaacgaaaaaatcaaaac
cgcaataaatccagctctcatcaggactcctccagaatgtccagtgttggagggcctttc
aaaaatggatggtcaaccagccttattcagagcaaagccctgattctcctcaattctatg
aaggctgagagagctgaggaagctgcagaagaaaagtctgaaagtagcagatattggttc
atgacgtttaaggaaagaagctgtctccatagcaaaaaagtgcaaggtgaaacagcaagt
attgatgaagaagctatagcaagttatccaggagatctatctaagatcactgatgaagat
tataacacaagtgagcaaaaacaagcctgtaagaagcacgaactctatgtgagcttccgg
gatctgggatggcaggactggattatagcaccagaaggatacgctgcattttattgtgat
ggagaatgttcttttccacttaacgcccatatgaatgccaccaaccacgctatagttcag
actctggttcatctgatgtttcctgaccacgtaccaaagccttgttgtgctccaaccaaa
ttaaatgccatctctgttctgtactttgatgacagctccaatgtcattttgaaaaaatat
agaaatatggtagtacgctcatgtggctgccactaa

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_8|128_aa
MTVSLIARCLMVWKSRGGNGSGSSQLTIYDSTSKICASDSQDIGLCWSRALSSQWYNANS
SVHGNSSIKLEVETATRPLRLLMPVNQEANHLLQLLYILSKGVCGIHGEAYQSPLQATHI
IKVGTPKA

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_8|387_bp
atgactgtttctctcatagccagatgtctcatggtctggaaatcaaggggtggaaatgga
agtggttcctctcaactcactatctatgattcaactagcaaaatctgtgcttctgactcc
caagacattgggctatgttggtccagagctcttagttcccaatggtacaatgctaactct
agtgtccatggcaatagttctattaaattggaagttgaaacagctacccggccacttcga
ctcctcatgccagtgaatcaagaagccaatcacctccttcagcttctctacatcctaagc
aaaggagtttgtggaattcatggtgaagcataccaatctcccctgcaggccacgcacatc
attaaagttggaactccaaaggcatga

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_9|302_aa
MISLYYVRIQGEDDPLQTRRTALTRLLIFEYLNLGLPASRTVRTSYQAAKFLGQDQYLIL
YVSQYFITISSIKLARTEITPLQDNKHAGPVTSLALARRPRPFSPGKQASSAPLFMLDLY
NAMTNEENPEESEYSVRASLAEETRGARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASL
HDTNFLNDADMVMSFVNLVERDKDFSHQRRHYKEFRFDLTQIPHGEAVTAAEFRIYKDRS
NNRFENETIKISIYQIIKEYTNRAFLQELLKLQPGAQGQNSDLPGPDPLVGGVVTVSKDQ
QT

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_9|909_bp
atgatctctctctactatgtgaggatacaaggagaagatgaccctttgcaaaccaggagg
acagcactcaccagactcctcatctttgagtacctcaatcttggacttcctgcttccaga
actgtgagaactagttatcaagctgctaaattcctgggccaggaccagtatcttattctt
tatgtatcacagtattttataacaatttctagcattaaactggctaggacagaaataaca
ccccttcaggataataagcacgcaggacccgttacctctctagcactggccagaagaccc
agaccattttcacctggaaaacaagcgtcctctgcacctctctttatgctggatctctac
aatgccatgaccaatgaagaaaatcctgaagagtcggagtactcagtaagggcatccttg
gcagaagagaccagaggggcaagaaagggatacccagcctctcccaatgggtatcctcgt
cgcatacagttatctcggacgactcctctgaccacccagagtcctcctctagccagcctc
catgataccaactttctgaatgatgctgacatggtcatgagctttgtcaacttagttgaa
agagacaaggatttttctcaccagcgaaggcattacaaagaatttcgatttgatcttacc
caaattcctcatggagaggcagtgacagcagctgaattccggatatacaaggaccggagc
aacaaccgatttgaaaatgaaacaattaagattagcatatatcaaatcatcaaggaatac
acaaatagggccttcctgcaggagcttctaaaactccaaccaggtgctcagggacagaac
tctgatctccctggacctgatcccctagtgggaggggtggtcacagtctccaaagaccag
cagacttag

>gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_10|293_aa
XFFRTKDKGLNHPARGKSSPAEGGRRSGEGVEEFAFQIDSGDADAAGLRIRLIYIHRKIG
HQKLSLQGSTGPLSSRKPLGNGLTVIPCEVSIARLLSDVQVCPELFLPSGGFVVSLASGA
KRQTFAVNVTALKAVHLECSLLLSGIVHSSCECHHPMEDSMDMAMSPLRPQNYLFGCELK
AGKDDHFKVDNGENDYQLSLRMLRRKMQNQEVEDNVKLLTISGKQSSPGGGSSLPQKKVK
LDAAEDDDDDNEDDDFDDEETEEKDSVKKSVEDIPAKNAQKSNQNGRTQNHQS

>gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_10|882_bp
ngcttcttcagaacaaaggataaaggtttaaatcaccccgccagaggaaaatcttcacca
gctgaaggtggccgaagatcaggggagggggtagaagaatttgcatttcaaatagattca
ggtgatgctgatgctgctggtctgaggatcagactgatctacattcatagaaaaattgga
caccagaagctgtccttgcaaggctctactggccctttgtcatccaggaagcctttaggc
aatggcttgactgtcattccttgtgaagtctcaattgccagacttctgagtgacgtgcaa
gtgtgtccagaattgtttcttccttctggtgggttcgtggtctctctggcttcaggagcg
aagcggcagaccttcgcagtgaatgttacagctcttaaggcggtgcatctggagtgttcg
ttactgctgtctggaattgttcattcctcttgtgagtgccaccaccccatggaagattca
atggacatggcaatgagccccctgaggcctcagaattatctttttggttgtgaactaaag
gccggcaaagatgatcactttaaggtggataatggtgaaaatgattaccagttatcttta
agaatgctgaggaggaagatgcagaatcaggaagtggaggacaatgtaaaactcctaact
atatctggaaagcaatcttcccctggaggtggtagcagccttccacagaaaaaagtaaaa
cttgatgctgctgaagatgatgatgatgataatgaagatgatgattttgatgatgaggaa
actgaagaaaaagattcagtgaagaaatctgtagaagatattccagccaaaaatgcacaa
aagtcaaatcagaatggaaggactcaaaaccatcaaagctaa