Result of FASTA (ccds) for pF1KB6635
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6635, 418 aa
  1>>>pF1KB6635 418 - 418 aa - 418 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9538+/-0.000827; mu= 14.8471+/- 0.050
 mean_var=87.1946+/-16.836, 0's: 0 Z-trim(108.3): 40  B-trim: 0 in 0/53
 Lambda= 0.137350
 statistics sampled from 10062 (10096) to 10062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.31), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS41942.1 SNX6 gene_id:58533|Hs108|chr14         ( 418) 2711 547.1 1.2e-155
CCDS9648.1 SNX6 gene_id:58533|Hs108|chr14          ( 290) 1848 376.0 2.6e-104
CCDS8113.2 SNX32 gene_id:254122|Hs108|chr11        ( 403) 1824 371.3 9.3e-103
CCDS13130.1 SNX5 gene_id:27131|Hs108|chr20         ( 404) 1772 361.0 1.2e-99


>>CCDS41942.1 SNX6 gene_id:58533|Hs108|chr14              (418 aa)
 initn: 2711 init1: 2711 opt: 2711  Z-score: 2908.0  bits: 547.1 E(32554): 1.2e-155
Smith-Waterman score: 2711; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB6 MRACAGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRACAGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCC
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB6 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
              370       380       390       400       410        

>>CCDS9648.1 SNX6 gene_id:58533|Hs108|chr14               (290 aa)
 initn: 1848 init1: 1848 opt: 1848  Z-score: 1986.1  bits: 376.0 E(32554): 2.6e-104
Smith-Waterman score: 1848; 100.0% identity (100.0% similar) in 290 aa overlap (129-418:1-290)

      100       110       120       130       140       150        
pF1KB6 AGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEV
                                     ::::::::::::::::::::::::::::::
CCDS96                               MTKEEFTKMKQELEAEYLAIFKKTVAMHEV
                                             10        20        30

      160       170       180       190       200       210        
pF1KB6 FLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDV
               40        50        60        70        80        90

      220       230       240       250       260       270        
pF1KB6 DDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKF
              100       110       120       130       140       150

      280       290       300       310       320       330        
pF1KB6 FLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKA
              160       170       180       190       200       210

      340       350       360       370       380       390        
pF1KB6 LDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK
              220       230       240       250       260       270

      400       410        
pF1KB6 HAKGNLQLLQNCLAVLNGDT
       ::::::::::::::::::::
CCDS96 HAKGNLQLLQNCLAVLNGDT
              280       290

>>CCDS8113.2 SNX32 gene_id:254122|Hs108|chr11             (403 aa)
 initn: 1838 init1: 946 opt: 1824  Z-score: 1958.3  bits: 371.3 E(32554): 9.3e-103
Smith-Waterman score: 1824; 70.5% identity (91.2% similar) in 386 aa overlap (35-417:17-402)

           10        20        30        40        50        60    
pF1KB6 AGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHT
                                     .::::.:..:::.::::.::::::::::.:
CCDS81               METYAEVGKEGKPSCASVDLQGDSSLQVEISDAVSERDKVKFTVQT
                             10        20        30        40      

           70        80        90       100       110       120    
pF1KB6 KSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGE
       :: ::.: :.::::::::::::::::..::::.::: :::::::::::.:::::::::::
CCDS81 KSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASREKLQKLGE
         50        60        70        80        90       100      

          130       140       150       160       170       180    
pF1KB6 GEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQD
       :..:.:.:::.::::::::::::::::::::::::: :.:::: :::: :: :::::.::
CCDS81 GDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQD
        110       120       130       140       150       160      

          190       200       210          220       230       240 
pF1KB6 LSVRGKNKKEKLEDFFKNMVKSADGVIV---SGVKDVDDFFEHERTFLLEYHNRVKDASA
       :::::::.:: :  :..:.::::: ...   ::.:.::::::::::::::::.:..::  
CCDS81 LSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACL
        170       180       190       200       210       220      

             250       260       270       280       290       300 
pF1KB6 KSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADED
       ..::. :.::  ::::  :...: .::::. ...   :::..:::.. ::.:.::..:::
CCDS81 RADRVMRAHKCLADDYIPISAALSSLGTQEVNQLRTSFLKLAELFERLRKLEGRVASDED
        230       240       250       260       270       280      

             310       320       330       340       350       360 
pF1KB6 LKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQ
       :::::.:.::.:.::::::::::: :.:.:::::::::::::..:..:  ::. ::::::
CCDS81 LKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESHQQLCCQ
        290       300       310       320       330       340      

             370       380       390       400       410        
pF1KB6 KFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
       .::..:.::::::.:::.:::..:::::.:::::::::::..  .:.: :..:.:. 
CCDS81 RFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLILRNTLVALKGEP
        350       360       370       380       390       400   

>>CCDS13130.1 SNX5 gene_id:27131|Hs108|chr20              (404 aa)
 initn: 1767 init1: 1739 opt: 1772  Z-score: 1902.6  bits: 361.0 E(32554): 1.2e-99
Smith-Waterman score: 1772; 64.5% identity (90.0% similar) in 400 aa overlap (21-417:5-404)

               10        20          30         40        50       
pF1KB6 MRACAGPRLGAAMMEGLDDGPDFLS--EEDRG-LKAINVDLQSDAALQVDISDALSERDK
                           :..:.  ::::. :....:::. : .::.:: ::::::::
CCDS13                 MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDK
                               10        20        30        40    

        60        70        80        90       100       110       
pF1KB6 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE
       ::::::::..::.:.. ::::.::::.:.::::...:. :::: :::::: .::::. ::
CCDS13 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPRE
           50        60        70        80        90       100    

       120       130       140       150       160       170       
pF1KB6 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHV
       :.:::::::::::::::.::::::::::::.:::::. ::::: :...::.: .: ::::
CCDS13 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV
          110       120       130       140       150       160    

       180       190       200       210       220       230       
pF1KB6 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVK
       ::::.:::::: :: :: .  :::..::::: :. .:::.::::::.:..::..:.::.:
CCDS13 FLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIK
          170       180       190       200       210       220    

       240       250       260       270       280       290       
pF1KB6 DASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVS
       :. .:.:.::::::..:::: . .. :..:. .. : : :..:::.:::.: ::.:.:::
CCDS13 DSCVKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVS
          230       240       250       260       270       280    

       300       310       320       330       340       350       
pF1KB6 ADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQ
       .::::::..::.::. . .:::::::::...:.::::.:::::::: :.:::  ::. ::
CCDS13 SDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQ
          290       300       310       320       330       340    

       360       370       380       390       400       410       
pF1KB6 LCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGD
        ::::::..:::::.:::.:: .:::::::::.:..:::.:::..:..:::.:. .....
CCDS13 ECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN
          350       360       370       380       390       400    

        
pF1KB6 T




418 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:11:36 2016 done: Sat Nov  5 11:11:37 2016
 Total Scan time:  3.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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