GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:47:07

Sequence gi568815590r:28248722_28461124 : 212403 bp : 45.97% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1181   1294  114  1  0   88   53    58 0.137   2.94
 1.02 Intr +  34476  34767  292  2  1    3   66   163 0.122   2.31
 1.03 Term +  35852  35958  107  0  2   55   49   133 0.957   4.67
 1.04 PlyA +  36435  36440    6                               1.05

 2.00 Prom +  45365  45404   40                              -5.36
 2.01 Sngl +  51112  51648  537  0  0   39   35   535 0.854  39.38
 2.02 PlyA +  51875  51880    6                               1.05

 3.00 Prom +  74696  74735   40                              -3.76
 3.01 Init +  80437  80562  126  0  0   78   92   110 0.651  10.80
 3.02 Term +  90319  90723  405  0  0  127   42   444 0.938  38.89
 3.03 PlyA +  94629  94634    6                               1.05

 4.11 PlyA -  96244  96239    6                               1.05
 4.10 Term - 100109  99998  112  1  1  114   49   233 0.999  20.03
 4.09 Intr - 100507 100404  104  1  2   86   94    65 0.576   5.87
 4.08 Intr - 101020 100913  108  1  0   81   82    10 0.517   0.18
 4.07 Intr - 101435 101343   93  2  0   93  117    -1 0.802   3.46
 4.06 Intr - 103086 102774  313  2  1   99   80   204 0.998  16.89
 4.05 Intr - 103952 103852  101  2  2  108   63   130 0.999  11.41
 4.04 Intr - 104687 104452  236  0  2   70  102   198 0.958  16.81
 4.03 Intr - 108058 107949  110  0  2   32   93   129 0.144   7.73
 4.02 Intr - 111103 110871  233  1  2  142   68   232 0.227  23.17
 4.01 Init - 112403 112164  240  2  0   99  100   191 0.964  17.28
 4.00 Prom - 112867 112828   40                              -9.16

 5.00 Prom + 113734 113773   40                              -2.96
 5.01 Init + 125193 125279   87  2  0   66   48    46 0.035  -0.96
 5.02 Intr + 137266 137754  489  0  0   69    5   312 0.207  14.20
 5.03 Intr + 152473 152654  182  0  2   10   30   110 0.019  -3.93
 5.04 Term + 153795 154020  226  0  1   51   41   174 0.265   5.25
 5.05 PlyA + 154361 154366    6                               1.05

 6.03 PlyA - 156882 156877    6                               1.05
 6.02 Term - 163264 162920  345  1  0   79   44   162 0.925   5.39
 6.01 Init - 164221 164150   72  1  0   78   60    79 0.855   5.17
 6.00 Prom - 170720 170681   40                              -4.66

 7.04 PlyA - 172611 172606    6                               1.05
 7.03 Term - 184027 183829  199  0  1   47   48   215 0.097  10.27
 7.02 Intr - 203755 203523  233  1  2   63   90    91 0.254   3.37
 7.01 Intr - 208209 208045  165  0  0   89   63   113 0.693   9.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_1|170_aa
LAAFQTHQPFSSHTHHASCASEQPCRRFSLPAACFHQLIEDQTSHNIPFSQSLIQRKALT
LFNSMKYKRGEETAEEWLEASRGWLIRFKGKRHFHDIKVQGEAASADVEAAASSPEDLAK
IIDEGGFTKQQIFSVEIDTATPTLSNHHPDESAAINIKARPSTSKKIMIC

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_1|513_bp
ctcgctgctttccagacccaccagcctttcagctcccacacacaccacgcttcctgtgcc
tctgaacagccgtgcaggcggttctcgctgcctgcggcctgcttccaccagctgatagaa
gatcaaaccagccacaacattcccttcagccaaagcctaatccagaggaaggcactaact
ctattcaattctatgaagtataagagaggtgaggaaacagcagaagaatggttggaagct
agcagaggttggcttataaggtttaagggaaaaaggcattttcacgacataaaagtgcaa
ggtgaagcagcaagtgctgatgtagaagctgcagcaagttctccagaagatctagctaag
atcattgatgaaggtggcttcactaaacaacagattttcagtgtagaaattgacacagcc
actccaaccctcagcaaccaccaccctgatgagtcagcagccatcaacatcaaggcaaga
ccttccaccagcaaaaagattatgatttgctga

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_2|178_aa
MIVHVTNRDIIYQIAYARIEGEIIVCAAYAHELPKYDVKVGLTNYAAAYCTGLLLACSLL
NRFGMDNIYDGQMEVTGDEYNVENIDGQPGAFTCYLDAGLARTITGNKVFGTLKGTVDRS
LSIPHSTKRFPGYDSESNAEVHQKRIMGQNVADYMRYLMEQDEDAYKKQFSQYIKKTA

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_2|537_bp
atgatagttcatgtaacaaacagagatatcatttatcagattgcttatgcccgtatagag
ggggaaattatagtctgcgcggcatatgcacacgaactgccaaaatatgatgtgaaggtt
ggcctaacaaattatgctgcagcatattgtactggcctgctgctggcctgcagtcttctc
aataggtttggcatggacaacatctatgacggccaaatggaggtgactggtgatgaatac
aatgtggaaaacattgatggtcagccaggtgcctttacctgctatttggatgcaggcctt
gccagaactatcactggcaataaagtttttggcacactgaagggaactgtggatagaagc
ttgtctatccctcacagtaccaaacgattccctggttatgattctgaaagcaatgcagaa
gtacaccagaagcgcatcatgggccagaatgttgcagattacatgcgctacttaatggaa
caagatgaagatgcttacaagaaacagttctctcaatacataaaaaaaacagcataa

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_3|176_aa
MKVLLCDLLLLSLFSSVFSSCQRDCLTCQEKLHPALDSFDLEVCILECEEKVFPSPLWTP
CTKVMARSSWQLSPAAPEHVAAALYQPRASEMQHLRRMPRVRSLFQEQEEPEPGMEEAGE
MEQKQLQKRFGGFTGARKSARKLANQKRFSEFMRQYLVLSMQSSQRRRTLHQNGNV

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_3|531_bp
atgaaagtcctgctttgtgacctgctgctgctcagtctcttctccagtgtgttcagcagt
tgtcagagggactgtctcacatgccaggagaagctccacccagccctggacagcttcgac
ctggaggtgtgcatcctcgagtgtgaagagaaggtcttccccagccccctctggactcca
tgcaccaaggtcatggccaggagctcttggcagctcagccctgccgccccagagcatgtg
gcggctgctctctaccagccgagagcttcggagatgcagcatctgcggcgaatgccccga
gtccggagcttgttccaggagcaggaagagcccgagcctggcatggaggaggctggtgag
atggagcagaagcagctgcagaagagatttgggggcttcaccggggcccggaagtcggcc
aggaagttggccaatcagaagcggttcagtgagtttatgaggcaatacttggtcctgagc
atgcagtccagccagcgccggcgcaccctgcaccagaatggtaatgtgtag

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_4|549_aa
MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKE
VLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVE
EVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCS
PVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPK
YLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRH
VKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMT
GLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPV
SPHIYTSVSWAAAPSAACSLSPDFNAEERKGENVEAVWAGSEISRPLETRAIGGPPTQVR
SRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKARGEAKKCRKVYGIEHRDQWCTACRW
KKACQRFLD

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_4|1650_bp
atggcgagtgtcctgtcccgacgccttggaaagcggtccctcctgggagcccgggtgttg
ggacccagtgcctcggaggggccctcggctgccccaccctcggagccactgctagaaggg
gccgctccccagcctttcaccacctctgatgacaccccctgccaggagcagcccaaggaa
gtccttaaggctcccagcacctcgggccttcagcaggtggcctttcagcctgggcagaag
gtttatgtgtggtacgggggtcaagagtgcacaggactggtggagcagcacagctggatg
gagggtcaggtgaccgtctggctgctggagcagaagctgcaggtctgctgcagggtggag
gaggtgtggctggcagagctgcagggcccctgtccccaggcaccacccctggagcccgga
gcccaggccctggcctacaggcccgtctccaggaacatcgatgtcccaaagaggaagtcg
gacgcagtggaaatggatgagatgatggcggccatggtgctgacgtccctgtcctgcagc
cctgttgtacagagtcctcccgggaccgaggccaacttctctgcttcccgtgcggcctgc
gacccatggaaggagagtggtgacatctcggacagcggcagcagcactaccagcggtcac
tggagtgggagcagtggtgtctccaccccctcgcccccccacccccaggccagccccaag
tatttgggggatgcttttggttctccccaaactgatcatggctttgagaccgatcctgac
cctttcctgctggacgaaccagctccacgaaaaagaaagaactctgtgaaggtgatgtac
aagtgcctgtggccaaactgtggcaaagttctgcgctccattgtgggcatcaaacgacac
gtcaaagccctccatctgggggacacagtggactctgatcagttcaagcgggaggaggat
ttctactacacagaggtgcagctgaaggaggaatctgctgctgctgctgctgctgctgcc
gcaggcaccccagtccctgggactcccacctccgagccagctcccacccccagcatgact
ggcctgcctctgtctgctcttccaccacctctgcacaaagcccagtcctccggcccagaa
catcctggcccggagtcctccctgccctcaggggctctcagcaagtcagctcctgggtcc
ttctggcacattcaggcagatcatgcataccaggctctgccatccttccagatcccagtc
tcaccacacatctacaccagtgtcagctgggctgctgccccctccgccgcctgctctctc
tctccggattttaatgctgaggagaggaagggggagaatgtggaggctgtgtgggctggg
tcagaaatctcaaggccactggagacaagggccataggtggacccccaactcaagtccgg
agccggtcgctaagcttcagcgagccccagcagccagcacctgcgatgaaatctcatctg
atcgtcacttctccaccccgggcccagagtggtgccaggaaagcccgaggggaggctaag
aagtgccgcaaggtgtatggcatcgagcaccgggaccagtggtgcacggcctgccggtgg
aagaaggcctgccagcgctttctggactga

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_5|327_aa
MHLCYNVQLKNPTAQQFHFLSTYPRENSQVPAQLTSARHERQHAPGFPGSDGSARTASSA
PGCSGRGPARPPGAARGPAPLRPPAEARLAPTWPACPPPRDTALTYAAAATTRPGFPPGK
GAEQHASPCQPAPSGDTRDTPPPAPRASAPPHPPSTPPARLGYTPPAARRQSALNKCPSD
SSRTCALEPDRVGDAATESFPGLGEVAETPSGTTRVRSPPPKQRCPDAPLGAQSAACTQP
LATTYRVCAHVCTWELAMASPPGEGCSGFPDDFAAVAASASAASERCPAAGLSPLPQVPA
QQSLLSFLPVSTEPDISSPLNAQAPAA

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_5|984_bp
atgcatctttgttacaatgtacaactcaagaaccctacggcccagcagttccactttctc
agtacctaccccagagaaaactcacaggtccccgcgcagctcacctcggcccgccacgag
cggcagcacgcgcccggcttccccggctcggacggctcggctcggacggctagctcagct
ccgggctgcagcggccgcggccctgcccgccctcccggcgcggcccgcggcccggctccg
ctccggccgcccgccgaggctcggttggcgcccacctggccggcctgccctcctccccgg
gacactgcgctcacgtacgcggccgcggccacaacccggcccggattcccgcccgggaag
ggagcggagcagcacgccagcccctgccagccggcgcccagcggcgacactcgggacaca
cccccgcccgccccccgcgcctccgcgcccccgcacccgcccagcacgcccccagcgcgc
ctgggctacacacccccggccgcccgtagacagtcggcgctcaataagtgcccgagcgac
tcctcgcgcacatgcgcacttgaacctgaccgagtgggcgatgctgccaccgagtcattt
cctggattaggagaagtggcagagacgccctcagggaccacacgtgtcagatctccacct
cccaagcagcgttgcccggacgcgccgctcggggcccagagcgctgcgtgcacgcagcct
ctagcaaccacttaccgcgtgtgtgcgcatgtgtgtacctgggaactggctatggcctcg
ccgcccggcgagggctgcagtgggttccccgacgactttgccgcggttgctgcttctgcc
agcgcagcctcggagcgctgcccggctgcagggctctcacctcttccccaggtccctgct
cagcagagcctcttaagcttcctgcctgtgtccacagaacccgacatctcaagccccctg
aacgcacaggctcctgctgcataa

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_6|138_aa
MGLQMEVKDGPKAFGGSDLDKEAEARALPPAAAGVEDRAGGGRRAEAAGCPRLEGRAGER
KRSLSRNSHRAAEGLPGPSEPQDRRGPASSSALAVGGAARKPDAAAPWPMASRIFPAAAG
AGLRHLQNFQEGAWRKST

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_6|417_bp
atgggtttacagatggaggtgaaagatgggcccaaggcctttggtggatcagacttagac
aaagaagctgaggcccgggcgcttccgccggccgcagccggggttgaggaccgagcagga
gggggacgccgggctgaagccgcgggttgtccccgcctcgagggcagggccggggagcgc
aaacgcagcctttccaggaactcgcaccgcgctgcagaggggctgccgggccccagcgag
ccgcaggacagacgcggcccggcatcctcgtccgcactcgcagtggggggagcagcgcgg
aaacccgacgccgccgctccctggccgatggcctctcgaatcttcccggcggcggccggc
gcggggctgcgtcacctgcagaactttcaggaaggggcctggaggaaatcaacctga

>gi568815590r:28248722_28461124|GENSCAN_predicted_peptide_7|198_aa
VCWHWKNLAELDQLWMLKCLRFNWYINFSPTPFEQGIWKKHYIQMVKELHITKPKTPPKD
GFVIADVQLVTSNSPEEKQSPLSAFRSSSSLRKKNNSGEKALPPWRSSDKHPTDIIRFNY
LDNRDPMETVQQGAALGMLMDGMAIGNVHLPESRQLQQRRLHIRKGSFMLVSFVKANVEN
GPNIYRYGSSGCELLYSH

>gi568815590r:28248722_28461124|GENSCAN_predicted_CDS_7|597_bp
gtgtgctggcattggaagaaccttgctgagctggaccagctctggatgctgaaatgttta
cggtttaactggtacatcaatttctctccaactccctttgagcaggggatctggaagaag
cactatattcaaatggtgaaagaacttcatattaccaagcctaagacacccccaaaggat
ggatttgtaatcgctgacgttcaactagttacaagcaattctccagaggaaaaacagtcc
cctttatcagcttttcggtcctcttcctctttaagaaagaagaataactcaggggagaaa
gcacttccaccctggcgatcttctgataagcacccaacagatatcattcgttttaattac
ctagacaaccgtgaccccatggagactgtccagcaaggggcagcactaggaatgctgatg
gacggcatggccattggcaacgtccacctaccagaaagcagacagctgcagcagaggagg
ctgcacattcgtaaagggtcattcatgttggtgtcgtttgtgaaagcaaacgttgaaaat
ggcccaaatatctatcggtatggttcatctggatgtgaactgctctacagccattga