FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5855, 459 aa
  1>>>pF1KB5855 459 - 459 aa - 459 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3773+/-0.000921; mu= -3.1782+/- 0.055
 mean_var=301.0549+/-61.831, 0's: 0 Z-trim(116.3): 14  B-trim: 425 in 2/50
 Lambda= 0.073918
 statistics sampled from 16868 (16879) to 16868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.518), width:  16
 Scan time:  3.220

The best scores are:                                      opt bits E(32554)
CCDS2420.1 RNF25 gene_id:64320|Hs108|chr2          ( 459) 3196 353.8 2.1e-97


>>CCDS2420.1 RNF25 gene_id:64320|Hs108|chr2               (459 aa)
 initn: 3196 init1: 3196 opt: 3196  Z-score: 1862.3  bits: 353.8 E(32554): 2.1e-97
Smith-Waterman score: 3196; 100.0% identity (100.0% similar) in 459 aa overlap (1-459:1-459)

               10        20        30        40        50        60
pF1KB5 MAASASAAAGEEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAASASAAAGEEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 YVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 YVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EQERQHATTKQKAVGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EQERQHATTKQKAVGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LYQRQQERGGIIDLEAERNRYFISLQQPPAPAEPESAVDVSKGSQPPSTLAAELSTSPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LYQRQQERGGIIDLEAERNRYFISLQQPPAPAEPESAVDVSKGSQPPSTLAAELSTSPAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 QSTLPPPLPVATQHICEKIPGTRSNQQRLGETQKAMLDPPKPSRGPWRQPERRHPKGGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 QSTLPPPLPVATQHICEKIPGTRSNQQRLGETQKAMLDPPKPSRGPWRQPERRHPKGGEC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 HAPKGTRDTQELPPPEGPLKEPMDLKPEPHSQGVEGPPQEKGPGSWQGPPPRRTRDCVRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HAPKGTRDTQELPPPEGPLKEPMDLKPEPHSQGVEGPPQEKGPGSWQGPPPRRTRDCVRW
              370       380       390       400       410       420

              430       440       450         
pF1KB5 ERSKGRTPGSSYPRLPRGQGAYRPGTRRESLGLESKDGS
       :::::::::::::::::::::::::::::::::::::::
CCDS24 ERSKGRTPGSSYPRLPRGQGAYRPGTRRESLGLESKDGS
              430       440       450         




459 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:31:43 2016 done: Sat Nov  5 10:31:43 2016
 Total Scan time:  3.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]