GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:29:10

Sequence gi568815587r:118654715_118886251 : 231537 bp : 45.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    891    976   86  1  2   91   77   131 0.965  11.84
 1.02 Intr +   1146   1178   33  2  0  106   65    38 0.748   1.72
 1.03 Term +   1969   2109  141  0  0  106   36   209 0.999  15.43
 1.04 PlyA +   3292   3297    6                               1.05

 2.15 PlyA -   3536   3531    6                              -1.95
 2.14 Term -   3727   3575  153  1  0   91   48   145 0.939   8.72
 2.13 Intr -   4157   3966  192  2  0   73   99    38 0.473   3.09
 2.12 Intr -   4303   4191  113  2  2   11  105   131 0.961   7.20
 2.11 Intr -   4767   4656  112  0  1   28   75   118 0.900   4.45
 2.10 Intr -   5367   5033  335  1  2   40   78   268 0.795  16.29
 2.09 Intr -   6019   5825  195  2  0  103   80   159 0.981  15.99
 2.08 Intr -   6201   6152   50  2  2   71  105    74 0.590   5.72
 2.07 Intr -   6568   6446  123  0  0   71   94    66 0.970   5.20
 2.06 Intr -   7015   6923   93  0  0   53   64   146 0.995   7.78
 2.05 Intr -   7276   7176  101  1  2   86   93    53 0.970   4.51
 2.04 Intr -   8254   8167   88  0  1   85   64    76 0.997   4.87
 2.03 Intr -   8482   8338  145  2  1  126   80   192 0.999  21.54
 2.02 Intr -   8725   8625  101  0  2  130   72   122 0.998  14.55
 2.01 Init -  24913  24825   89  1  2  103   75   141 0.806  12.42
 2.00 Prom -  28547  28508   40                              -6.86

 3.08 PlyA -  29482  29477    6                               1.05
 3.07 Term -  33471  33319  153  0  0   94   48    68 0.367   1.32
 3.06 Intr -  35068  35015   54  1  0   85   99    52 0.659   5.18
 3.05 Intr -  35454  35278  177  0  0   34   65    94 0.400   1.82
 3.04 Intr -  35922  35671  252  0  0   28   78   284 0.491  19.03
 3.03 Intr -  45843  45819   25  2  1  128   66   -13 0.002  -1.47
 3.02 Intr -  63529  63397  133  2  1   95   87    18 0.009   2.10
 3.01 Init -  65551  65479   73  1  1   31  110    35 0.020   1.38
 3.00 Prom -  66097  66058   40                              -2.56

 4.06 PlyA -  66476  66471    6                               1.05
 4.05 Term -  67354  67222  133  0  1   70   43   124 0.088   3.66
 4.04 Intr -  73253  72850  404  2  2   49   36   238 0.228   7.93
 4.03 Intr -  74461  74356  106  0  1   37   21   140 0.144   2.42
 4.02 Intr -  87176  86980  197  2  2   49   92   117 0.879   6.41
 4.01 Init -  87509  87483   27  2  0   68   77    32 0.428  -0.19
 4.00 Prom -  92062  92023   40                              -3.46

 5.13 PlyA -  92150  92145    6                               1.05
 5.12 Term - 100173  99998  176  1  2   66   42   224 0.994  13.52
 5.11 Intr - 100789 100688  102  2  0   63   94    49 0.856   3.15
 5.10 Intr - 101609 101546   64  2  1   76  119    78 0.999   7.99
 5.09 Intr - 102573 102457  117  0  0   71  109    20 0.498   3.06
 5.08 Intr - 104188 104060  129  1  0  119   90   134 0.973  17.59
 5.07 Intr - 105330 105208  123  0  0  116  101    13 0.983   6.18
 5.06 Intr - 108592 108498   95  2  2   28   80    65 0.984  -0.62
 5.05 Intr - 110641 110495  147  2  0   59  110    62 0.850   5.71
 5.04 Intr - 113638 113509  130  1  1   79   96    44 0.863   4.57
 5.03 Intr - 125022 124918  105  0  0   83   91    55 0.972   5.71
 5.02 Intr - 126470 126407   64  1  1   85  123    35 0.999   5.42
 5.01 Init - 131537 131338  200  2  2   69   97   126 0.831   9.97
 5.00 Prom - 132991 132952   40                              -7.96

 6.04 PlyA - 133095 133090    6                               1.05
 6.03 Term - 135440 135292  149  0  2  106   45    60 0.878   1.56
 6.02 Intr - 137486 137336  151  2  1   83   40   160 0.680  10.44
 6.01 Init - 157005 156955   51  0  0   83   64    34 0.051   1.73
 6.00 Prom - 158900 158861   40                              -4.36

 7.02 PlyA - 159487 159482    6                               1.05
 7.01 Sngl - 179346 179074  273  0  0   13   38   282 0.824  11.03
 7.00 Prom - 179945 179906   40                              -4.56

 8.00 Prom + 180840 180879   40                              -7.26
 8.01 Init + 203084 203086    3  1  0   87  101     0 0.133   1.20
 8.02 Intr + 217701 217886  186  2  0   69   80    97 0.260   6.89
 8.03 Intr + 225736 225811   76  0  1  112   92    38 0.273   5.69
 8.04 Intr + 229217 229278   62  0  2   27  105   143 0.117   8.35
 8.05 Term + 229605 229694   90  2  0  118   37    25 0.661  -1.88
 8.06 PlyA + 229805 229810    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_1|86_aa
XKHETKLKGVIYFQAIEEVYYDHLRSAAKKRFFRFTMVTESPNPALTFCVKTHDRLYYMV
APSAEAMRIWMDVIVTGAEGYTQFMN

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_1|261_bp
nacaagcatgagacgaagctgaagggagtcatctatttccaggccattgaggaagtgtac
tacgaccacctgcgcagtgcagccaagaagaggtttttccgcttcactatggtgactgag
agcccgaacccagccctcaccttctgcgtaaagacccatgaccggctgtactacatggtg
gccccatctgcagaggccatgcgtatctggatggatgtcattgtcacaggggctgagggc
tacactcagttcatgaactaa

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_2|629_aa
MPGRTWELCLLLLLGLGLGSQEALPPPCESEIYCHGELLNQVQMAKLYQDDKQFVDMPLS
IAPEQVLQTFTELSRDHNHSIPREQLQAFVHEHFQAKGQELQPWTPADWKDSPQFLQKIS
DAKLRAWAGQLHQLWKKLGKKMKPEVLSHPERFSLIYSEHPFIVPGGRFVEFYYWDSYWV
MEGLLLSEMAETVKGMLQNFLDLVKTENIETLALELDFWTKNRTVSVSLEGKNYLLNRYY
VPYGGPRPESYSKDVELADTLPEGDREALWAELKAGAESGWDFSSRWLIGGPNPNSLSGI
RTSKLVPVDLNAFLCQAEELMSNFYSRLGCLSLCRETQSGEAKVEPRKKPGAAGRALAAG
SKGSTAPGNDSQATKYRILRSQRLAALNTVLWDEQTGAWFDYDLEKKKKNREFYPSNLTP
LWAGCFSDPGVADKALKYLEDNRILTYQYGIPTSLQKTGQQWDFPNAWAPLQDLVIRGLA
KAPLRRAQEVAFQLAQNWIRTNFDVYSQKSAMYEKAVPVATPEHCRGCWAGRAASPQGLW
LFVVPGAGGQYLTYSPPACPQYDVSNGGQPGGGGEYEVQEGFGWTNGVVLMLLDRYGDRL
TSGAKLAFLEPHCLAATLLPSLLLSLLPW

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_2|1890_bp
atgccagggaggacctgggagctgtgcctgctactgctgctggggctgggactggggtcc
caggaggccctacccccaccctgtgagagtgagatttactgccacggggagctcctaaac
caagttcaaatggccaagctctaccaggatgacaagcagtttgtggacatgccactgtct
atagctccagaacaagtcctgcagaccttcactgagctgtccagggaccacaatcacagc
atccccagggagcagctgcaggcgtttgtccacgaacacttccaggccaaggggcaggag
ctgcagccctggacccctgcagactggaaagacagcccccagttcctgcagaagatttca
gatgccaaactgcgtgcctgggcagggcagctgcatcagctctggaagaagctggggaag
aagatgaagccagaggttctcagccaccctgagcggttctctctcatctactcagaacat
cccttcattgtgcctggcggtcgctttgttgagttctactactgggactcctactgggtc
atggagggtctgctcctctcagagatggctgagacggtgaagggcatgctgcagaacttc
ttggacctggtgaaaacggaaaacattgaaacactagccttggaattggacttttggacc
aagaacaggactgtctctgtgagcttggagggaaagaactacctcctgaatcgctattat
gtcccttatgggggacccaggcctgagtcctacagcaaagatgtggagttggctgacacc
ttgccagaaggagaccgggaggctctgtgggctgagctcaaggctggggctgagtctggc
tgggacttctcttcacgctggctcattggaggcccaaaccccaactcgcttagcggcatc
cgaacaagcaaactggtgcctgttgacctgaatgccttcctatgccaagcagaggagctg
atgagcaacttctattccaggctggggtgtctcagcctttgcagagaaacacaaagcggg
gaggctaaagtagaaccacgaaaaaagcctggggcagcaggcagggcactggctgctggc
tctaaaggcagcactgccccagggaacgactcccaggccacgaagtacagaatcctgcgg
tcgcagcgcttggccgccctgaacacagtcctgtgggatgagcagaccggagcctggttc
gattacgaccttgagaagaagaagaaaaaccgggagttttacccatccaacctcactcca
ctctgggccgggtgtttctctgaccctggcgtggcggacaaggctctgaaatacctggag
gacaaccggatcctgacttaccagtatgggatcccgacctctctccagaagacaggccag
cagtgggatttccccaatgcctgggcccccctgcaggacctggtcatcagaggcctggcc
aaggcacctttacgtcgggcccaggaagtggctttccagctggctcagaattggatccga
accaattttgatgtctactcgcagaagtcagccatgtatgagaaggctgtcccagtggcc
actcctgagcactgcaggggctgctgggcaggcagagcagcttctccccaggggctctgg
ttgtttgttgttcctggagctggggggcagtacctgacatacagcccacccgcttgtccc
cagtatgacgtcagcaacggtggacagcccggtgggggaggagaatatgaagttcaggag
ggatttggctggacgaatggcgtggtcctgatgctgctggaccgctatggtgaccggctg
acctcaggggccaagctggctttcctggagccccactgcctggcggccacccttctgccc
agcctcctgctcagcctcctgccatggtga

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_3|288_aa
MLPDRLGSPVDHRGCRALSNLTVEGKVERTKGLLKTHLTKLSHQLKKDWTILLPLSLLRS
QTCPQNATRSFLSPIKQRAPVGPKGSTAPGNDSQATKYRILPAQRLAALNTVLWDEQTSA
WFDYDLENKENREFYPSNLTPLWNGCFSDPGVADKALKYLESSPTHSHGNVWNLLGQPDP
DLPICPRIGSEPTLMSTSKSAMYEKMSWPEPSPYPQGVPVYDISNGGEPGGGGEYEVQEG
FGWMNGVVLMLLDCCGDRLTLGAQLAFLEPHCLAATLFPSLLLSLLPQ

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_3|867_bp
atgctgcctgatcgccttggaagccccgtagaccatcgcggatgccgagctttaagtaat
ctcacagtggagggaaaagtagaacggactaaaggtcttttaaaaacacacctcaccaag
ctcagccaccaacttaaaaaggactggacaatacttttaccactttcccttctcagaagt
cagacatgtcctcagaatgctacaaggtcatttctctctccaataaagcagagggctcct
gtagggcccaaaggcagcactgccccagggaacgactcccaggccacaaagtacagaatc
ctgccggcgcagcgcttggccgccctgaacacagtcctgtgggatgagcagaccagtgcc
tggttcgactacgaccttgagaacaaggagaaccgggagttttacccatccaacctcact
ccactctggaacgggtgtttctctgaccctggcgtggcggacaaggctctgaaatacctg
gagtccagccccacccacagtcacgggaatgtctggaaccttctagggcagccagatcct
gatctaccaatatgccccagaattggatccgaaccaactttgatgtctaccagcaagtca
gccatgtatgagaagatgagctggcctgagccctccccgtacccccagggcgtccccgtg
tatgacattagcaacggtggagagcccggtggcggaggggagtatgaagttcaggagggc
tttggctggatgaatggcgtggtcctgatgctactggactgctgtggtgaccggctgacc
ttaggggcccagctggctttcttggagccccactgtctggcggccaccctttttcccagc
ctcctgctcagccttctgccacagtga

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_4|288_aa
MLIHGIMDVGGPEQEKALKQAQAALQVALPLVSYGLAEVSMADRNAYMEALKGFFRCVVA
QPFRNVKKSYAAVYRVKVLSSVVIEDKSTRDPEYVYSQPYGKLVGSEEARTWWIDGVQEQ
VRRNRAANPPVNIDADQLLGRGQNWSTISQQAFMQNEAIEQVRAICLRAWEKIQDPGSAC
PSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKAHKVIVELMAYENANPECQSAIKPLKG
KVPTGCTQQLRRDSDHREWAMMTMAVLSKRKGGNVGKSKRDQIVTVSV

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_4|867_bp
atgctgatccacggtatcatggacgtgggtggcccagaacaagagaaggctctgaaacag
gcccaggctgcattacaagtagctctgccacttgtgtcttatggtctggcagaagtgtct
atggctgacaggaatgcttatatggaggctttgaaaggctttttcagatgtgtggtagca
cagccctttaggaatgtaaagaaaagctatgccgccgtctacagggtgaaggtactctca
agcgtggtcattgaggacaagtcgacgagagatcccgagtacgtctacagtcagccttac
ggtaagcttgtgggctcagaagaagctaggacttggtggattgatggggtacaagaacag
gtccgaagaaatagggctgccaatcctccagttaacatagatgcagatcaactattagga
agaggtcaaaattggagtactattagtcaacaagcattcatgcaaaatgaggccattgag
caagttagagctatctgccttagagcctgggaaaaaatccaagacccaggaagcgcctgc
ccctcatttaatacagtaagacaaggttcaaaagagccctaccctgattttgtggcaagg
ctccaagatgttgctcaaaagtcaattgccgacgaaaaagcccataaggtcatagtggag
ttgatggcatatgaaaacgccaatcctgagtgtcaatcagccattaagccattaaaagga
aaggttcccacagggtgtacccaacagctccgaagagacagcgaccatcgagaatgggcc
atgatgacgatggcggttttgtcgaaaagaaaagggggaaatgtggggaaaagcaagaga
gatcagattgttactgtgtctgtatag

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_5|483_aa
MSTARTENPVIMGLSSQNGQLRGPVKPTGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_5|1452_bp
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcaaaatggtcag
ctgagaggccctgtgaaacccactggtggccctggaggagggggcacacagacacagcaa
cagatgaaccagctgaaaaacaccaacacaatcaataatggcactcagcagcaagcacag
agtatgaccaccactattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgggagttactgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctg
aagaaggacaatatacaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccaca
ggaggaaccaatttacgagatgacataatgaggcttgatgatacagtgcacgtggtgatt
gctacccctgggagaatcctggatcttattaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataagttgctgtcacaggattttgtgcagataatg
gaggatattattctcacgctacctaaaaacaggcagattttactatattccgctactttc
cctcttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaactaactctgaagggagtaacccagtactacgcatatgtaactgagcgccaa
aaagtacactgcctcaacacacttttctccaggcttcagataaaccagtcgatcattttc
tgtaactcctctcagcgagttgaattgctagccaagaagatttctcaactgggttattct
tgcttctatattcatgctaaaatgaggcaggaacatcgaaatcgtgtatttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgatttcccaaagctggcagagacctatctccat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaaaagtattgaggagcagctgggaacagaaattaaacctatt
ccgagcaacattgataagagcctgtatgtggcagaataccacagcgagcctgtagaagat
gagaaaccttaa

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_6|116_aa
MAGKGGAGTSFTGRQDGTGPPRYALTVRSPAVLSRRTLKSGAFPPQTPEAHPQARCLCAP
RRGALKPAPISLQNKTQSLQLAGKARKTALHLQTKALVGDDDTVLGVKLSIANYDL

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_6|351_bp
atggcaggcaaaggaggagcaggcacctccttcacagggcggcaggatggaacaggtccc
ccaagatacgccctcacagtccggtcccccgccgtcctctcccggcgcacgctcaagtcc
ggtgccttccccccgcagacccccgaggcgcaccctcaagctcggtgcctctgcgccccc
cgcaggggcgccctcaagcctgcccccatttcccttcagaataaaacccagtcactccaa
cttgcaggcaaagctagaaaaactgcgctgcatttgcaaacaaaagctcttgttggcgat
gacgatactgttttgggtgtgaaactgtcaattgctaactacgatctgtga

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_7|90_aa
MEIWRGFDKAFKSDTEYSQSEELESFFTWFTDHSDAGAGELGEVIKDDIWPNSLQLYLVP
DTDDKEKEEDDDDEGLEDTDKGEEDERGDG

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_7|273_bp
atggaaatctggaggggatttgataaagcattcaagtcagacacagaatacagccagagt
gaggaattggagagcttttttacctggttcactgatcattctgatgcgggtgctggagag
ttaggagaggtcatcaaagatgatatttggccaaactcattacagctctacttggttcct
gatacggatgataaagaaaaagaagaagatgatgatgatgaagggttggaagatactgac
aaaggagaggaggatgaaagaggagatggctaa

>gi568815587r:118654715_118886251|GENSCAN_predicted_peptide_8|138_aa
MRRSHCVSSPVPYCCVINYSQVPGPHPVAPTLQPRRLPSWGSRAESFGNLSRRSSVIKVQ
MRQAHQAFTLSKPPVAKTSMKSFLTFGYTGTAMNYPLTLEMDLENLEDLGRNMELDRKVL
WRFSYRKEAGIANQSMNA

>gi568815587r:118654715_118886251|GENSCAN_predicted_CDS_8|417_bp
atgcgccggtcccactgtgtcagcagccctgtcccctactgctgtgtcatcaattactct
caggtgcctggcccccacccagtggcccccaccttgcagccccgaaggcttccttcctgg
ggcagcagggccgagtcatttggaaacctctctcggaggagctccgtgatcaaggtgcag
atgcggcaggcacaccaagccttcactctctccaagcctccagtggccaagacttccatg
aagtctttcctgacctttgggtataccggcacagccatgaactacccgctaacgctggaa
atggacctcgagaacctggaggacctgggtcggaatatggaactagacaggaaagtactt
tggaggttttcttaccgtaaggaggctggcattgctaatcagtcaatgaatgcatag