Result of FASTA (omim) for pF1KB5822
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5822, 543 aa
  1>>>pF1KB5822 543 - 543 aa - 543 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4505+/-0.000353; mu= -3.5372+/- 0.022
 mean_var=303.5517+/-61.915, 0's: 0 Z-trim(124.1): 50  B-trim: 35 in 1/53
 Lambda= 0.073614
 statistics sampled from 45102 (45166) to 45102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.53), width:  16
 Scan time: 11.620

The best scores are:                                      opt bits E(85289)
NP_001161299 (OMIM: 600744) transcription factor E ( 490) 3244 357.8 4.5e-98
XP_005249468 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_005249469 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_006715275 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_011513218 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
NP_009093 (OMIM: 600744) transcription factor EB i ( 476) 3198 352.9 1.3e-96
XP_006715276 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
XP_011513217 (OMIM: 600744) PREDICTED: transcripti ( 476) 3198 352.9 1.3e-96
NP_001258873 (OMIM: 600744) transcription factor E ( 476) 3198 352.9 1.3e-96
NP_001258874 (OMIM: 600744) transcription factor E ( 476) 3198 352.9 1.3e-96
NP_001258872 (OMIM: 600744) transcription factor E ( 391) 2138 240.3 8.6e-63
NP_006512 (OMIM: 300854,314310) transcription fact ( 575) 1129 133.2 2.1e-30
NP_001269071 (OMIM: 300854,314310) transcription f ( 470) 1111 131.2 6.7e-30
XP_011514265 (OMIM: 604732) PREDICTED: transcripti ( 437)  811 99.4 2.5e-20
XP_011514266 (OMIM: 604732) PREDICTED: transcripti ( 437)  811 99.4 2.5e-20
XP_011514268 (OMIM: 604732) PREDICTED: transcripti ( 437)  811 99.4 2.5e-20
XP_011514267 (OMIM: 604732) PREDICTED: transcripti ( 437)  811 99.4 2.5e-20
XP_016861937 (OMIM: 103470,103500,156845,193510,61 ( 468)  770 95.0 5.4e-19
NP_001171896 (OMIM: 103470,103500,156845,193510,61 ( 468)  770 95.0 5.4e-19
XP_016861936 (OMIM: 103470,103500,156845,193510,61 ( 503)  770 95.1 5.7e-19
NP_937820 (OMIM: 103470,103500,156845,193510,61445 ( 504)  770 95.1 5.7e-19
XP_016861934 (OMIM: 103470,103500,156845,193510,61 ( 519)  770 95.1 5.8e-19
NP_006713 (OMIM: 103470,103500,156845,193510,61445 ( 519)  770 95.1 5.8e-19
NP_937802 (OMIM: 103470,103500,156845,193510,61445 ( 520)  770 95.1 5.8e-19
NP_937821 (OMIM: 103470,103500,156845,193510,61445 ( 357)  755 93.3 1.3e-18
NP_937801 (OMIM: 103470,103500,156845,193510,61445 ( 413)  755 93.4 1.5e-18
XP_011532028 (OMIM: 103470,103500,156845,193510,61 ( 464)  755 93.4 1.6e-18
NP_036384 (OMIM: 604732) transcription factor EC i ( 347)  728 90.5 9.4e-18
XP_016867364 (OMIM: 604732) PREDICTED: transcripti ( 347)  728 90.5 9.4e-18
NP_000239 (OMIM: 103470,103500,156845,193510,61445 ( 419)  706 88.2 5.5e-17
XP_011532027 (OMIM: 103470,103500,156845,193510,61 ( 470)  706 88.2   6e-17
XP_006713227 (OMIM: 103470,103500,156845,193510,61 ( 474)  706 88.2   6e-17
XP_011532025 (OMIM: 103470,103500,156845,193510,61 ( 509)  706 88.3 6.3e-17
XP_016861935 (OMIM: 103470,103500,156845,193510,61 ( 509)  706 88.3 6.3e-17
XP_005264812 (OMIM: 103470,103500,156845,193510,61 ( 510)  706 88.3 6.4e-17
XP_011532024 (OMIM: 103470,103500,156845,193510,61 ( 525)  706 88.3 6.5e-17
XP_016861933 (OMIM: 103470,103500,156845,193510,61 ( 525)  706 88.3 6.5e-17
XP_005264811 (OMIM: 103470,103500,156845,193510,61 ( 526)  706 88.3 6.5e-17
XP_011514274 (OMIM: 604732) PREDICTED: transcripti ( 287)  686 85.9 1.8e-16
XP_016867365 (OMIM: 604732) PREDICTED: transcripti ( 259)  669 84.1 5.8e-16
NP_001231512 (OMIM: 604732) transcription factor E ( 280)  669 84.1 6.1e-16
NP_001018068 (OMIM: 604732) transcription factor E ( 318)  669 84.2 6.7e-16
XP_016867363 (OMIM: 604732) PREDICTED: transcripti ( 408)  669 84.3 8.2e-16
XP_011514272 (OMIM: 604732) PREDICTED: transcripti ( 408)  669 84.3 8.2e-16
XP_016867366 (OMIM: 604732) PREDICTED: transcripti ( 239)  636 80.6 6.1e-15
XP_016867367 (OMIM: 604732) PREDICTED: transcripti ( 239)  636 80.6 6.1e-15
XP_011514271 (OMIM: 604732) PREDICTED: transcripti ( 418)  452 61.2 7.2e-09


>>NP_001161299 (OMIM: 600744) transcription factor EB is  (490 aa)
 initn: 3244 init1: 3244 opt: 3244  Z-score: 1881.8  bits: 357.8 E(85289): 4.5e-98
Smith-Waterman score: 3244; 100.0% identity (100.0% similar) in 483 aa overlap (61-543:8-490)

               40        50        60        70        80        90
pF1KB5 VPVILASPCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRE
                                     ::::::::::::::::::::::::::::::
NP_001                        MTASSGWEPAPAATMASRIGLRMQLMREQAQQEEQRE
                                      10        20        30       

              100       110       120       130       140       150
pF1KB5 RMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMQQQAVMHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYH
        40        50        60        70        80        90       

              160       170       180       190       200       210
pF1KB5 LQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQSQHQKVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSP
       100       110       120       130       140       150       

              220       230       240       250       260       270
pF1KB5 MAMLHIGSNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMLHIGSNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTAS
       160       170       180       190       200       210       

              280       290       300       310       320       330
pF1KB5 LVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIP
       220       230       240       250       260       270       

              340       350       360       370       380       390
pF1KB5 KANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQA
       280       290       300       310       320       330       

              400       410       420       430       440       450
pF1KB5 RVHGLPTTSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVHGLPTTSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPL
       340       350       360       370       380       390       

              460       470       480       490       500       510
pF1KB5 PTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLL
       400       410       420       430       440       450       

              520       530       540   
pF1KB5 PLASDPLLSTMSPEASKASSRRSSFSMEEGDVL
       :::::::::::::::::::::::::::::::::
NP_001 PLASDPLLSTMSPEASKASSRRSSFSMEEGDVL
       460       470       480       490

>>XP_005249468 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_005                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_005 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>XP_005249469 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_005                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_005 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>XP_006715275 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_006                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_006 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>XP_011513218 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_011                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_011 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>NP_009093 (OMIM: 600744) transcription factor EB isofo  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
NP_009                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
NP_009 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>XP_006715276 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_006                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_006 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>XP_011513217 (OMIM: 600744) PREDICTED: transcription f  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
XP_011                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
XP_011 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>NP_001258873 (OMIM: 600744) transcription factor EB is  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
NP_001                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
NP_001 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      

>>NP_001258874 (OMIM: 600744) transcription factor EB is  (476 aa)
 initn: 3198 init1: 3198 opt: 3198  Z-score: 1855.5  bits: 352.9 E(85289): 1.3e-96
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 476 aa overlap (68-543:1-476)

        40        50        60        70        80        90       
pF1KB5 PCQPLCFEEDTCLIYLLPLLIHREPAPAATMASRIGLRMQLMREQAQQEEQRERMQQQAV
                                     ::::::::::::::::::::::::::::::
NP_001                               MASRIGLRMQLMREQAQQEEQRERMQQQAV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB5 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHYMQQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQ
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB5 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVREYLSETYGNKFAAHISPAQGSPKPPPAASPGVRAGHVLSSSAGNSAPNSPMAMLHIG
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB5 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPERELDDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSS
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB5 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDV
              220       230       240       250       260       270

       340       350       360       370       380       390       
pF1KB5 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPT
              280       290       300       310       320       330

       400       410       420       430       440       450       
pF1KB5 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSGMNMAELAQQVVKQELPSEEGPGEALMLGAEVPDPEPLPALPPQAPLPLPTQPPSP
              340       350       360       370       380       390

       460       470       480       490       500       510       
pF1KB5 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHLDFSHSLSFGGREDEGPPGYPEPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPL
              400       410       420       430       440       450

       520       530       540   
pF1KB5 LSTMSPEASKASSRRSSFSMEEGDVL
       ::::::::::::::::::::::::::
NP_001 LSTMSPEASKASSRRSSFSMEEGDVL
              460       470      




543 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:26:17 2016 done: Sat Nov  5 10:26:18 2016
 Total Scan time: 11.620 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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