FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7979, 432 aa
  1>>>pF1KB7979 432 - 432 aa - 432 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0822+/-0.00111; mu= 12.1911+/- 0.065
 mean_var=67.8004+/-13.533, 0's: 0 Z-trim(102.5): 58  B-trim: 44 in 1/49
 Lambda= 0.155761
 statistics sampled from 6949 (6980) to 6949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.214), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS3858.1 TRIP13 gene_id:9319|Hs108|chr5          ( 432) 2765 630.9 7.5e-181


>>CCDS3858.1 TRIP13 gene_id:9319|Hs108|chr5               (432 aa)
 initn: 2765 init1: 2765 opt: 2765  Z-score: 3360.4  bits: 630.9 E(32554): 7.5e-181
Smith-Waterman score: 2765; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)

               10        20        30        40        50        60
pF1KB7 MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 AANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 FIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDK
              370       380       390       400       410       420

              430  
pF1KB7 QFEERKKLAAYI
       ::::::::::::
CCDS38 QFEERKKLAAYI
              430  




432 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:21:50 2016 done: Sat Nov  5 10:21:50 2016
 Total Scan time:  2.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]