Result of FASTA (omim) for pF1KB7970
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7970, 410 aa
  1>>>pF1KB7970 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9094+/-0.000365; mu= 6.8890+/- 0.023
 mean_var=190.3932+/-39.005, 0's: 0 Z-trim(120.4): 203  B-trim: 1849 in 1/53
 Lambda= 0.092950
 statistics sampled from 35327 (35569) to 35327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.417), width:  16
 Scan time:  9.880

The best scores are:                                      opt bits E(85289)
NP_060758 (OMIM: 613069) PHD finger protein 10 iso ( 498) 2822 390.6 4.4e-108
NP_579866 (OMIM: 613069) PHD finger protein 10 iso ( 496) 2795 387.0 5.4e-107
XP_016866487 (OMIM: 613069) PREDICTED: PHD finger  ( 446) 1559 221.2 3.9e-57
XP_016877159 (OMIM: 601672) PREDICTED: zinc finger ( 378)  445 71.8 3.2e-12
NP_001267471 (OMIM: 601672) zinc finger protein DP ( 378)  445 71.8 3.2e-12
XP_016873591 (OMIM: 601671) PREDICTED: zinc finger ( 371)  441 71.2 4.6e-12
XP_016873590 (OMIM: 601671) PREDICTED: zinc finger ( 385)  441 71.3 4.8e-12
NP_006259 (OMIM: 601671) zinc finger protein ubi-d ( 391)  441 71.3 4.8e-12
NP_001317237 (OMIM: 601671) zinc finger protein ub ( 405)  441 71.3 4.9e-12
NP_001128628 (OMIM: 601670) zinc finger protein ne ( 332)  435 70.4 7.4e-12
XP_005259347 (OMIM: 601670) PREDICTED: zinc finger ( 388)  435 70.5 8.4e-12
NP_001128627 (OMIM: 601670) zinc finger protein ne ( 414)  435 70.5 8.8e-12
XP_005259349 (OMIM: 601670) PREDICTED: zinc finger ( 369)  431 69.9 1.2e-11
XP_005259346 (OMIM: 601670) PREDICTED: zinc finger ( 397)  431 69.9 1.2e-11
NP_001292807 (OMIM: 601408,616268) histone acetylt ( 815)  428 69.8 2.8e-11
XP_016871498 (OMIM: 603736,605880,606170) PREDICTE (1727)  432 70.6 3.3e-11
XP_016871497 (OMIM: 603736,605880,606170) PREDICTE (1781)  432 70.6 3.4e-11
XP_016871495 (OMIM: 603736,605880,606170) PREDICTE (1781)  432 70.6 3.4e-11
NP_001243398 (OMIM: 603736,605880,606170) histone  (1781)  432 70.6 3.4e-11
XP_016871496 (OMIM: 603736,605880,606170) PREDICTE (1781)  432 70.6 3.4e-11
NP_001243397 (OMIM: 603736,605880,606170) histone  (1890)  432 70.7 3.5e-11
XP_016871494 (OMIM: 603736,605880,606170) PREDICTE (1890)  432 70.7 3.5e-11
XP_016871493 (OMIM: 603736,605880,606170) PREDICTE (2019)  432 70.7 3.7e-11
XP_016871492 (OMIM: 603736,605880,606170) PREDICTE (2073)  432 70.7 3.8e-11
XP_016871489 (OMIM: 603736,605880,606170) PREDICTE (2073)  432 70.7 3.8e-11
XP_016871490 (OMIM: 603736,605880,606170) PREDICTE (2073)  432 70.7 3.8e-11
XP_016871491 (OMIM: 603736,605880,606170) PREDICTE (2073)  432 70.7 3.8e-11
NP_036462 (OMIM: 603736,605880,606170) histone ace (2073)  432 70.7 3.8e-11
XP_005269721 (OMIM: 603736,605880,606170) PREDICTE (2073)  432 70.7 3.8e-11
XP_016869353 (OMIM: 601408,616268) PREDICTED: hist (2004)  428 70.1 5.4e-11
XP_016869352 (OMIM: 601408,616268) PREDICTED: hist (2004)  428 70.1 5.4e-11
NP_006757 (OMIM: 601408,616268) histone acetyltran (2004)  428 70.1 5.4e-11
XP_011542961 (OMIM: 601408,616268) PREDICTED: hist (2041)  428 70.2 5.4e-11
XP_011542960 (OMIM: 601408,616268) PREDICTED: hist (2048)  428 70.2 5.4e-11
XP_011542959 (OMIM: 601408,616268) PREDICTED: hist (2048)  428 70.2 5.4e-11
XP_011542958 (OMIM: 601408,616268) PREDICTED: hist (2048)  428 70.2 5.4e-11
XP_016877161 (OMIM: 601672) PREDICTED: zinc finger ( 354)  309 53.5 9.5e-07
NP_004638 (OMIM: 601670) zinc finger protein neuro ( 380)  298 52.1 2.8e-06
XP_006723472 (OMIM: 601670) PREDICTED: zinc finger ( 242)  288 50.6 5.1e-06
XP_006723473 (OMIM: 601670) PREDICTED: zinc finger ( 242)  288 50.6 5.1e-06
XP_011525660 (OMIM: 601670) PREDICTED: zinc finger ( 342)  288 50.7 6.5e-06
XP_006723471 (OMIM: 601670) PREDICTED: zinc finger ( 396)  288 50.8 7.3e-06
XP_006723470 (OMIM: 601670) PREDICTED: zinc finger ( 398)  288 50.8 7.3e-06
NP_001276907 (OMIM: 601670) zinc finger protein ne ( 424)  288 50.8 7.7e-06
XP_011525659 (OMIM: 601670) PREDICTED: zinc finger ( 379)  284 50.2   1e-05
XP_011525658 (OMIM: 601670) PREDICTED: zinc finger ( 407)  284 50.2 1.1e-05
XP_011514756 (OMIM: 606833) PREDICTED: histone-lys (4678)  267 48.9 0.00032
XP_011537078 (OMIM: 147920,602113) PREDICTED: hist (5525)  268 49.1 0.00032
XP_006719679 (OMIM: 147920,602113) PREDICTED: hist (5536)  268 49.1 0.00033
NP_003473 (OMIM: 147920,602113) histone-lysine N-m (5537)  268 49.1 0.00033


>>NP_060758 (OMIM: 613069) PHD finger protein 10 isoform  (498 aa)
 initn: 2822 init1: 2822 opt: 2822  Z-score: 2061.4  bits: 390.6 E(85289): 4.4e-108
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:89-498)

                                             10        20        30
pF1KB7                               MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
                                     ::::::::::::::::::::::::::::::
NP_060 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPDLERRDLSHK
       60        70        80        90       100       110        

               40        50        60        70        80        90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
      120       130       140       150       160       170        

              100       110       120       130       140       150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
      180       190       200       210       220       230        

              160       170       180       190       200       210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
      240       250       260       270       280       290        

              220       230       240       250       260       270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
      300       310       320       330       340       350        

              280       290       300       310       320       330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
      360       370       380       390       400       410        

              340       350       360       370       380       390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
      420       430       440       450       460       470        

              400       410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
       ::::::::::::::::::::
NP_060 QRAPPTPRKVGRRGKNSKEG
      480       490        

>>NP_579866 (OMIM: 613069) PHD finger protein 10 isoform  (496 aa)
 initn: 2797 init1: 2680 opt: 2795  Z-score: 2041.9  bits: 387.0 E(85289): 5.4e-107
Smith-Waterman score: 2795; 99.5% identity (99.5% similar) in 410 aa overlap (1-410:89-496)

                                             10        20        30
pF1KB7                               MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
                                     ::::::::::::::::::::  ::::::::
NP_579 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYP--ERRDLSHK
       60        70        80        90       100         110      

               40        50        60        70        80        90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
        120       130       140       150       160       170      

              100       110       120       130       140       150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
        180       190       200       210       220       230      

              160       170       180       190       200       210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
        240       250       260       270       280       290      

              220       230       240       250       260       270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
        300       310       320       330       340       350      

              280       290       300       310       320       330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
        360       370       380       390       400       410      

              340       350       360       370       380       390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_579 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
        420       430       440       450       460       470      

              400       410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
       ::::::::::::::::::::
NP_579 QRAPPTPRKVGRRGKNSKEG
        480       490      

>>XP_016866487 (OMIM: 613069) PREDICTED: PHD finger prot  (446 aa)
 initn: 1510 init1: 1510 opt: 1559  Z-score: 1146.7  bits: 221.2 E(85289): 3.9e-57
Smith-Waterman score: 2363; 87.3% identity (87.3% similar) in 410 aa overlap (1-410:89-446)

                                             10        20        30
pF1KB7                               MLQEQVSEYLGVTSFKRKYPDLERRDLSHK
                                     ::::::::::::::::::::::::::::::
XP_016 TSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPDLERRDLSHK
       60        70        80        90       100       110        

               40        50        60        70        80        90
pF1KB7 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYK
      120       130       140       150       160       170        

              100       110       120       130       140       150
pF1KB7 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQG
      180       190       200       210       220       230        

              160       170       180       190       200       210
pF1KB7 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTALYEPPLDPELPALDSD
      240       250       260       270       280       290        

              220       230       240       250       260       270
pF1KB7 GDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP
       :::::::::::::::::::::                                       
XP_016 GDSDDGEDGRGDEKRKNKGTS---------------------------------------
      300       310                                                

              280       290       300       310       320       330
pF1KB7 KRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
                    :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------------PKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTME
                  320       330       340       350       360      

              340       350       360       370       380       390
pF1KB7 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC
        370       380       390       400       410       420      

              400       410
pF1KB7 QRAPPTPRKVGRRGKNSKEG
       ::::::::::::::::::::
XP_016 QRAPPTPRKVGRRGKNSKEG
        430       440      

>>XP_016877159 (OMIM: 601672) PREDICTED: zinc finger pro  (378 aa)
 initn: 416 init1: 296 opt: 445  Z-score: 340.3  bits: 71.8 E(85289): 3.2e-12
Smith-Waterman score: 445; 41.2% identity (67.6% similar) in 136 aa overlap (260-390:228-363)

     230       240       250       260       270         280       
pF1KB7 TSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP--KRSVLSKSVPGYKPKVI
                                     :.:   .  .:  .:.   .   :    ::
XP_016 YVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVI
       200       210       220       230       240       250       

       290       300        310       320       330       340      
pF1KB7 PNAICGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECK
       ::  : .:: :.. ::: :. : :. :..:  ::::.::..:....  .::: :::.:::
XP_016 PNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK
       260       270       280       290       300       310       

        350       360       370         380       390       400    
pF1KB7 TCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSGRWICDCCQRAPPTPRKVGRRG
       .::.::  .......::: :::::: .:..  ..  : : : :  :              
XP_016 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQ
       320       330       340       350       360       370       

          410
pF1KB7 KNSKEG
             
XP_016 A     
             

>>NP_001267471 (OMIM: 601672) zinc finger protein DPF3 i  (378 aa)
 initn: 416 init1: 296 opt: 445  Z-score: 340.3  bits: 71.8 E(85289): 3.2e-12
Smith-Waterman score: 445; 41.2% identity (67.6% similar) in 136 aa overlap (260-390:228-363)

     230       240       250       260       270         280       
pF1KB7 TSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAATPRKDGP--KRSVLSKSVPGYKPKVI
                                     :.:   .  .:  .:.   .   :    ::
NP_001 YVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVI
       200       210       220       230       240       250       

       290       300        310       320       330       340      
pF1KB7 PNAICGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECK
       ::  : .:: :.. ::: :. : :. :..:  ::::.::..:....  .::: :::.:::
NP_001 PNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK
       260       270       280       290       300       310       

        350       360       370         380       390       400    
pF1KB7 TCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSGRWICDCCQRAPPTPRKVGRRG
       .::.::  .......::: :::::: .:..  ..  : : : :  :              
NP_001 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQ
       320       330       340       350       360       370       

          410
pF1KB7 KNSKEG
             
NP_001 A     
             

>>XP_016873591 (OMIM: 601671) PREDICTED: zinc finger pro  (371 aa)
 initn: 462 init1: 310 opt: 441  Z-score: 337.5  bits: 71.2 E(85289): 4.6e-12
Smith-Waterman score: 459; 33.2% identity (57.6% similar) in 238 aa overlap (180-390:117-354)

     150       160       170       180       190        200        
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
                                     : . : :  .:. :.   .  :.:.  :  
XP_016 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
         90       100       110       120       130       140      

        210       220       230          240          250          
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPP---DSQEDSFQGR-----
       ::..   .:    ::  : :.::.... .   ... : .. :   :     ...:     
XP_016 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDICGKRYKNRPGLSY
        150       160       170       180       190       200      

                  260        270       280       290       300     
pF1KB7 ---------QKSKDKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKK-
                ....::  . :     .::  .::  :    ..::  : .::  .. ::: 
XP_016 HYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKT
        210       220       230       240       250       260      

          310       320       330       340       350       360    
pF1KB7 GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCD
       :. : :. ::.:  :::::::..:  ... .::: :::.::: : :::  .......:::
XP_016 GQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNICGTSENDDQLLFCD
        270       280       290       300       310       320      

          370         380       390       400       410
pF1KB7 MCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSKEG
        :::::: .:.  ...  : : : :  :                    
XP_016 DCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS   
        330       340       350       360       370    

>>XP_016873590 (OMIM: 601671) PREDICTED: zinc finger pro  (385 aa)
 initn: 462 init1: 310 opt: 441  Z-score: 337.3  bits: 71.3 E(85289): 4.8e-12
Smith-Waterman score: 453; 32.1% identity (54.8% similar) in 252 aa overlap (180-390:117-368)

     150       160       170       180       190        200        
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
                                     : . : :  .:. :.   .  :.:.  :  
XP_016 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
         90       100       110       120       130       140      

        210       220       230          240       250             
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPPDSQEDSFQGRQKSK----
       ::..   .:    ::  : :.::.... .   ... : .. : . ..::. .. ::    
XP_016 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDNSFKQKHTSKAPQR
        150       160       170       180       190       200      

                                260        270       280       290 
pF1KB7 ---------------------------DKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAI
                                  ::  . :     .::  .::  :    ..::  
XP_016 VCGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNY
        210       220       230       240       250       260      

             300        310       320       330       340       350
pF1KB7 CGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCII
       : .::  .. ::: :. : :. ::.:  :::::::..:  ... .::: :::.::: : :
XP_016 CDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNI
        270       280       290       300       310       320      

              360       370         380       390       400        
pF1KB7 CGQPHHEEEMMFCDMCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSK
       ::  .......::: :::::: .:.  ...  : : : :  :                  
XP_016 CGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS 
        330       340       350       360       370       380      

      410
pF1KB7 EG

>>NP_006259 (OMIM: 601671) zinc finger protein ubi-d4 is  (391 aa)
 initn: 462 init1: 310 opt: 441  Z-score: 337.2  bits: 71.3 E(85289): 4.8e-12
Smith-Waterman score: 459; 33.2% identity (57.6% similar) in 238 aa overlap (180-390:137-374)

     150       160       170       180       190        200        
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
                                     : . : :  .:. :.   .  :.:.  :  
NP_006 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
        110       120       130       140       150       160      

        210       220       230          240          250          
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPP---DSQEDSFQGR-----
       ::..   .:    ::  : :.::.... .   ... : .. :   :     ...:     
NP_006 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDICGKRYKNRPGLSY
        170       180       190       200       210       220      

                  260        270       280       290       300     
pF1KB7 ---------QKSKDKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKK-
                ....::  . :     .::  .::  :    ..::  : .::  .. ::: 
NP_006 HYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKT
        230       240       250       260       270       280      

          310       320       330       340       350       360    
pF1KB7 GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCD
       :. : :. ::.:  :::::::..:  ... .::: :::.::: : :::  .......:::
NP_006 GQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNICGTSENDDQLLFCD
        290       300       310       320       330       340      

          370         380       390       400       410
pF1KB7 MCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSKEG
        :::::: .:.  ...  : : : :  :                    
NP_006 DCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS   
        350       360       370       380       390    

>>NP_001317237 (OMIM: 601671) zinc finger protein ubi-d4  (405 aa)
 initn: 462 init1: 310 opt: 441  Z-score: 337.0  bits: 71.3 E(85289): 4.9e-12
Smith-Waterman score: 453; 32.1% identity (54.8% similar) in 252 aa overlap (180-390:137-388)

     150       160       170       180       190        200        
pF1KB7 GKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPL-NTALYEPPLDPE--LPA
                                     : . : :  .:. :.   .  :.:.  :  
NP_001 KKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDDDSLGEFPVTNSRARKRILEPDDFLDD
        110       120       130       140       150       160      

        210       220       230          240       250             
pF1KB7 LDSDGDSDDGEDGRGDEKRKNKGTSDSSS---GNVSEGESPPDSQEDSFQGRQKSK----
       ::..   .:    ::  : :.::.... .   ... : .. : . ..::. .. ::    
NP_001 LDDEDYEEDTPKRRGKGKSKGKGVGSARKKLDASILEDRDKPYACDNSFKQKHTSKAPQR
        170       180       190       200       210       220      

                                260        270       280       290 
pF1KB7 ---------------------------DKAAT-PRKDGPKRSVLSKSVPGYKPKVIPNAI
                                  ::  . :     .::  .::  :    ..::  
NP_001 VCGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQRSEEQKSKKGPDGLALPNNY
        230       240       250       260       270       280      

             300        310       320       330       340       350
pF1KB7 CGICLKGKESNKK-GKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCII
       : .::  .. ::: :. : :. ::.:  :::::::..:  ... .::: :::.::: : :
NP_001 CDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNI
        290       300       310       320       330       340      

              360       370         380       390       400        
pF1KB7 CGQPHHEEEMMFCDMCDRGYHTFCV--GLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSK
       ::  .......::: :::::: .:.  ...  : : : :  :                  
NP_001 CGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS 
        350       360       370       380       390       400      

      410
pF1KB7 EG

>>NP_001128628 (OMIM: 601670) zinc finger protein neuro-  (332 aa)
 initn: 367 init1: 318 opt: 435  Z-score: 333.8  bits: 70.4 E(85289): 7.4e-12
Smith-Waterman score: 435; 39.0% identity (65.4% similar) in 159 aa overlap (240-392:168-319)

     210       220       230       240       250           260     
pF1KB7 DGDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQ----GRQKSKDKAATP
                                     :::   . .   :.     .:  :. : .:
NP_001 KPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEENAERHALPFHRKNNHKQFYKELAWVP
       140       150       160       170       180       190       

         270       280       290       300       310       320     
pF1KB7 RKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCL
       .    .:.  .:..:     ::::. : .:: :  :.: :  :.:: :..:  :::::::
NP_001 EA---QRKHTAKKAPD--GTVIPNGYCDFCLGG--SKKTGCPEDLISCADCGRSGHPSCL
          200       210         220         230       240       250

         330       340       350       360       370         380   
pF1KB7 DMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVG--LGAIPSG
       ..:..... ..:: :::.:::.: .::  .......::: :::::: .:..  ..  : :
NP_001 QFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEG
              260       270       280       290       300       310

           390       400       410
pF1KB7 RWICDCCQRAPPTPRKVGRRGKNSKEG
        : :  : :                  
NP_001 SWSCHLCLRHLKEKASAYITLT     
              320       330       




410 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:20:36 2016 done: Sat Nov  5 10:20:37 2016
 Total Scan time:  9.880 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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