Result of FASTA (ccds) for pF1KB7966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7966, 401 aa
  1>>>pF1KB7966 401 - 401 aa - 401 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2856+/-0.000813; mu= 7.5518+/- 0.050
 mean_var=247.6336+/-49.821, 0's: 0 Z-trim(116.6): 42  B-trim: 0 in 0/54
 Lambda= 0.081502
 statistics sampled from 17247 (17288) to 17247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.531), width:  16
 Scan time:  3.730

The best scores are:                                      opt bits E(32554)
CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18         ( 401) 2747 335.3   6e-92
CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18         ( 286) 1787 222.3 4.6e-58
CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18         ( 272) 1784 221.9 5.6e-58
CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18         ( 252) 1688 210.6 1.3e-54
CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20        ( 237)  533 74.7 9.8e-14


>>CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18              (401 aa)
 initn: 2747 init1: 2747 opt: 2747  Z-score: 1764.2  bits: 335.3 E(32554): 6e-92
Smith-Waterman score: 2747; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KB7 MVLAQSRVSAGVGSPHCSGSGGGGSDSFPWPASHPGNPQCSFSTAFLASPRLSRGTLAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVLAQSRVSAGVGSPHCSGSGGGGSDSFPWPASHPGNPQCSFSTAFLASPRLSRGTLAYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWELPRSPSQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWELPRSPSQGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTIS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 RRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSG
              310       320       330       340       350       360

              370       380       390       400 
pF1KB7 LFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
       :::::::::::::::::::::::::::::::::::::::::
CCDS11 LFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
              370       380       390       400 

>>CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18              (286 aa)
 initn: 1787 init1: 1787 opt: 1787  Z-score: 1155.9  bits: 222.3 E(32554): 4.6e-58
Smith-Waterman score: 1787; 97.8% identity (98.5% similar) in 275 aa overlap (127-401:12-286)

        100       110       120       130       140       150      
pF1KB7 ELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDL
                                     :  : . .::::::::::::::::::::::
CCDS11                    MTCSGKSCALARSSLTSSQGIVAASGSETEDEDSMDIPLDL
                                  10        20        30        40 

        160       170       180       190       200       210      
pF1KB7 SSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFI
              50        60        70        80        90       100 

        220       230       240       250       260       270      
pF1KB7 NARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAG
             110       120       130       140       150       160 

        280       290       300       310       320       330      
pF1KB7 PNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKN
             170       180       190       200       210       220 

        340       350       360       370       380       390      
pF1KB7 FTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQ
             230       240       250       260       270       280 

        400 
pF1KB7 AKLTA
       :::::
CCDS11 AKLTA
            

>>CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18              (272 aa)
 initn: 1784 init1: 1784 opt: 1784  Z-score: 1154.3  bits: 221.9 E(32554): 5.6e-58
Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 268 aa overlap (134-401:5-272)

           110       120       130       140       150       160   
pF1KB7 PRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSG
                                     ::::::::::::::::::::::::::::::
CCDS11                           MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSG
                                         10        20        30    

           170       180       190       200       210       220   
pF1KB7 KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL
           40        50        60        70        80        90    

           230       240       250       260       270       280   
pF1KB7 PDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGR
          100       110       120       130       140       150    

           290       300       310       320       330       340   
pF1KB7 PLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLM
          160       170       180       190       200       210    

           350       360       370       380       390       400 
pF1KB7 YPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
          220       230       240       250       260       270  

>>CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18              (252 aa)
 initn: 1688 init1: 1688 opt: 1688  Z-score: 1093.7  bits: 210.6 E(32554): 1.3e-54
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 252 aa overlap (150-401:1-252)

     120       130       140       150       160       170         
pF1KB7 AQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQIL
                                     ::::::::::::::::::::::::::::::
CCDS11                               MDIPLDLSSSAGSGKRRRRGNLPKESVQIL
                                             10        20        30

     180       190       200       210       220       230         
pF1KB7 RDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTI
               40        50        60        70        80        90

     240       250       260       270       280       290         
pF1KB7 SRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARP
              100       110       120       130       140       150

     300       310       320       330       340       350         
pF1KB7 SVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQS
              160       170       180       190       200       210

     360       370       380       390       400 
pF1KB7 GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
              220       230       240       250  

>>CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20             (237 aa)
 initn: 745 init1: 515 opt: 533  Z-score: 360.1  bits: 74.7 E(32554): 9.8e-14
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (148-398:3-217)

       120       130       140       150       160       170       
pF1KB7 QGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQ
                                     :: :.  : .  . .:::.::::::::::.
CCDS13                             MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVK
                                            10        20        30 

       180       190       200       210       220       230       
pF1KB7 ILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQF
       ::::::: ::::::::::::  :: ::.::.::.::::::::::::::::::::::::::
CCDS13 ILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQF
              40        50        60        70        80        90 

       240       250       260       270       280       290       
pF1KB7 TISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLA
       ::::::.: :...           .:            : .:..     : :..  : :.
CCDS13 TISRRGGKASDVA-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LS
             100                             110       120         

       300       310       320       330       340       350       
pF1KB7 RPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNT
         :.  :.       .::        :.  . . ... . : : :   :    .:     
CCDS13 VCSMPLHSGQGEKPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-----
      130       140             150       160       170            

       360       370        380       390       400                
pF1KB7 QSGLFNTPPPTPPDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA               
         :::::::::::. .. :::.:::::.:::.:::::::: .                  
CCDS13 --GLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSEN
         180       190       200       210       220       230     

CCDS13 PQ
         




401 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:18:09 2016 done: Sat Nov  5 10:18:09 2016
 Total Scan time:  3.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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