FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7965, 280 aa 1>>>pF1KB7965 280 - 280 aa - 280 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.2148+/-0.00103; mu= -1.8676+/- 0.063 mean_var=433.8456+/-88.395, 0's: 0 Z-trim(117.3): 18 B-trim: 181 in 1/54 Lambda= 0.061575 statistics sampled from 18067 (18085) to 18067 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.556), width: 16 Scan time: 2.670 The best scores are: opt bits E(32554) CCDS3305.1 HES1 gene_id:3280|Hs108|chr3 ( 280) 1916 183.2 1.8e-46 CCDS5.1 HES4 gene_id:57801|Hs108|chr1 ( 221) 792 83.2 1.8e-16 CCDS44034.1 HES4 gene_id:57801|Hs108|chr1 ( 247) 652 70.8 1.1e-12 >>CCDS3305.1 HES1 gene_id:3280|Hs108|chr3 (280 aa) initn: 1916 init1: 1916 opt: 1916 Z-score: 947.7 bits: 183.2 E(32554): 1.8e-46 Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280) 10 20 30 40 50 60 pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPPPGPGGPQHAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPPPGPGGPQHAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 FAPPPPLVPIPGGAAPPPGGAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FAPPPPLVPIPGGAAPPPGGAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAH 190 200 210 220 230 240 250 260 270 280 pF1KB7 SGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN :::::::::::::::::::::::::::::::::::::::: CCDS33 SGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN 250 260 270 280 >>CCDS5.1 HES4 gene_id:57801|Hs108|chr1 (221 aa) initn: 844 init1: 764 opt: 792 Z-score: 409.2 bits: 83.2 E(32554): 1.8e-16 Smith-Waterman score: 797; 60.9% identity (77.2% similar) in 215 aa overlap (1-200:1-214) 10 20 30 40 50 60 pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL : :: : :.::.:..:::.. :::::..:.::::::::.:::::::::::::.::::: CCDS5. MAADTPGKPSASPMAGAPASASRTPDKPRSAAEHRKSSKPVMEKRRRARINESLAQLKTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE :::::.:.:::::::::::::::::.:::.:.:.:.:::::.::.::::::::: ::. : CCDS5. ILDALRKESSRHSKLEKADILEMTVRHLRSLRRVQVTAALSADPAVLGKYRAGFHECLAE 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPP---------P :.:::. :::: ..::.::::::: :. :.. :.. :: : : : : CCDS5. VNRFLAGCEGVPADVRSRLLGHLAACLRQLGPSRRPASLSPAAPAEAPAPEVYAGRPLLP 130 140 150 160 170 180 180 190 200 210 220 pF1KB7 GPGGPQHAPFAPP--PPL---VPIPGGAAPP-PGGAPCKLGSQAGEAAKVFGGFQVVPAP . ::: .::: : : .: :.: ::: CCDS5. SLGGP-FPLLAPPLLPGLTRALPAAPRAGPQGPGGPWRPWLR 190 200 210 220 230 240 250 260 270 280 pF1KB7 DGQFAFLIPNGAFAHSGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN >>CCDS44034.1 HES4 gene_id:57801|Hs108|chr1 (247 aa) initn: 836 init1: 628 opt: 652 Z-score: 341.5 bits: 70.8 E(32554): 1.1e-12 Smith-Waterman score: 735; 54.4% identity (68.9% similar) in 241 aa overlap (1-200:1-240) 10 20 30 pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRK------------------------ : :: : :.::.:..:::.. :::::..:.:::: CCDS44 MAADTPGKPSASPMAGAPASASRTPDKPRSAAEHRKVGSRPGVRGATGGREGRGTQPVPD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB7 --SSKPIMEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRA ::::.:::::::::::::.::::::::::.:.:::::::::::::::::.:::.:.:. CCDS44 PQSSKPVMEKRRRARINESLAQLKTLILDALRKESSRHSKLEKADILEMTVRHLRSLRRV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB7 QMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMT :.:::::.::.::::::::: ::. ::.:::. :::: ..::.::::::: :. :.. CCDS44 QVTAALSADPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQLGPSR 130 140 150 160 170 180 160 170 180 190 pF1KB7 YPGQPHPALQAPPPPP---------PGPGGPQHAPFAPP--PPL---VPIPGGAAPP-PG :.. :: : : : :. ::: .::: : : .: :.: :: CCDS44 RPASLSPAAPAEAPAPEVYAGRPLLPSLGGP-FPLLAPPLLPGLTRALPAAPRAGPQGPG 190 200 210 220 230 200 210 220 230 240 250 pF1KB7 GAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAHSGPVIPVYTSNSGTSVGPN : CCDS44 GPWRPWLR 240 280 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 10:17:31 2016 done: Sat Nov 5 10:17:32 2016 Total Scan time: 2.670 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]