GENSCAN 1.0	Date run:  5-Nov-116	Time: 10:15:04

Sequence gi568815588r:119475668_119688248 : 212581 bp : 46.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +  18410  18769  360  1  0  101   37   141 0.721   6.37
 1.02 PlyA +  18926  18931    6                               1.05

 2.06 PlyA -  20558  20553    6                               1.05
 2.05 Term -  24592  24446  147  1  0  125   52   153 0.993  13.30
 2.04 Intr -  39985  39842  144  1  0   64   91   207 0.922  19.08
 2.03 Intr -  50451  50365   87  0  0  114   68     0 0.045   0.77
 2.02 Intr -  51776  51639  138  2  0   32    9   177 0.039   4.86
 2.01 Init -  56110  56102    9  1  0  110   81    28 0.134   3.31
 2.00 Prom -  56310  56271   40                              -2.96

 3.17 PlyA -  56448  56443    6                               1.05
 3.16 Term -  66753  66312  442  2  1   60   52   200 0.003   8.33
 3.15 Intr -  67020  66923   98  0  2   87  115    50 0.003   6.41
 3.14 Intr -  80166  80052  115  2  1  106   82    -6 0.137   1.05
 3.13 Intr -  86687  86445  243  1  0   99   75    37 0.016   0.11
 3.12 Intr - 101083 100944  140  1  2  103   89    51 0.095   5.96
 3.11 Intr - 101536 101413  124  0  1   63   91    77 0.136   6.09
 3.10 Intr - 101868 101784   85  1  1  102   92   -12 0.994  -0.52
 3.09 Intr - 102069 101974   96  1  0   77   87    18 0.595   0.58
 3.08 Intr - 103167 103059  109  0  1  104   69    95 0.973   9.06
 3.07 Intr - 104343 104268   76  2  1  105   92    44 0.971   6.02
 3.06 Intr - 106342 106255   88  2  1   55   97    44 0.978   1.03
 3.05 Intr - 106556 106502   55  2  1   85  100    -7 0.976  -1.25
 3.04 Intr - 106890 106792   99  0  0   98  116    55 0.817   9.61
 3.03 Intr - 121268 121148  121  1  1   94   -2   129 0.001   5.00
 3.02 Intr - 121422 121344   79  1  1  108   51    42 0.015   1.11
 3.01 Init - 124077 124011   67  0  1   81   43    76 0.019   3.63
 3.00 Prom - 127431 127392   40                              -2.96

 4.00 Prom + 128433 128472   40                              -0.86
 4.01 Init + 143013 143088   76  2  1   68   72   125 0.955  10.16
 4.02 Term + 150487 150668  182  2  2   46   39    92 0.132  -2.13
 4.03 PlyA + 152535 152540    6                               1.05

 5.00 Prom + 154039 154078   40                              -3.66
 5.01 Sngl + 162759 163415  657  2  0   75   35   728 0.912  62.38
 5.02 PlyA + 163445 163450    6                               1.05

 6.00 Prom + 174813 174852   40                              -3.56
 6.01 Init + 176009 176188  180  1  0   84  105   339 0.522  34.38
 6.02 Intr + 184580 184696  117  1  0  109   90    54 0.832   8.36
 6.03 Intr + 190872 191048  177  2  0   14   -3   181 0.466   1.72
 6.04 Intr + 194184 194324  141  2  0   96   55    90 0.755   7.05
 6.05 Intr + 194352 194510  159  2  0   61   94    50 0.654   3.08
 6.06 Intr + 196588 196989  402  0  0  104   96   224 0.882  19.42
 6.07 Intr + 200797 200970  174  0  0   84   75   126 0.630  11.04
 6.08 Term + 201052 201615  564  0  0  103   38   604 0.863  51.29
 6.09 PlyA + 201754 201759    6                               1.05

 7.00 Prom + 203450 203489   40                              -5.86
 7.01 Init + 208140 208238   99  2  0   47  105    41 0.115   2.11
 7.02 Intr + 211514 211604   91  1  1   68   76    70 0.120   3.37
 7.03 Intr + 211666 211760   95  2  2   59   78    79 0.161   3.68
 7.04 Intr + 212206 212269   64  0  1   75   96    65 0.130   4.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  38154  38040  115  0  1   89   97    40 0.805   5.02
S.002 Init -  41639  41592   48  2  0   93   81    42 0.901   3.85
S.003 Term - 101083 100945  139  0  1  103   40   165 0.862  10.64


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_1|119_aa
MEMAGMDTVKLYFGEESRGLSDDQMSKCRTEETLRPLPAAPTQWPCGNQEKGSSKQACST
GHPCKTLTLRPSLASAKLLKPLILTQRPGQFWTCKACSVCGNPRGALGSAQGLGTISTQ

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_1|360_bp
atggagatggcaggcatggacacggtgaagctatattttggagaagaatctagaggactt
tctgatgatcagatgtcgaagtgcaggacagaggagactctcaggccacttccagctgcc
cctacccagtggccttgtgggaatcaggaaaagggctcctctaaacaagcatgcagcaca
gggcacccgtgcaagaccctcaccctgagaccctcccttgcaagtgcgaagttgctcaag
cccctgattctcactcagagacctggtcaattttggacttgcaaagcttgtagtgtctgt
ggcaatccaaggggagccctgggctctgcccaaggtttagggaccatttcaacacagtga

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_2|174_aa
MALSELCFADIHDSDGSSSSSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEEN
VLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRLNEKILEEPHPLMF
QKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEEEEDLPDAQTAAKRASRIYNT

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_2|525_bp
atggccctgtctgaactttgctttgcagacatccacgacagcgatggcagttccagcagc
agccaccagagcctcaagagcacagccaaatgggcggcatccctggagaatctgctggaa
gacccagaaggcgtgaaaagatttagggaatttttaaaaaaggaattcagtgaagaaaat
gttttgttttggctagcatgtgaagattttaagaaaatgcaagataagacgcagatgcag
gaaaaggcaaaggagatctacatgacctttctgtccagcaaggcctcatcacaggtcaac
gtggaggggcagtctcggctcaacgagaagatcctggaagaaccgcaccctctgatgttc
cagaaactccaggaccagatctttaatctcatgaagtacgacagctacagccgcttctta
aagtctgacttgtttttaaaacacaagcgaaccgaggaagaggaagaagatttgcctgat
gctcaaactgcagctaaaagagcttccagaatttataacacatga

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_3|678_aa
MVAARENEDDAKAETPDKTIRSPRRLPGRRTSSRMTTLPRSLLFTSQRGTTIPRDFGFTT
FLFLPDLSRSWLGFGRPEAHSDDVIRRERHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL
GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT
GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE
DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAA
HAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGW
QVPPYGVYGQPWNQQGFGVERFTPTAGQILQEIRDGLPYRRRGVRTLIVICAERKDVNTD
TSYSTIFLSLKELTDTGLKGVQNESRNEPFKCDCSYCLYHSISQQLSPTLFCQFSPMVFG
SFQKPIRSTKYCSRNVRENPPRRRAAPSSSSGARGDVQPRREPAEQEAAAVSRDGSAELL
REPRGGSLAERGTAAVFFLVMVWEKKERPKSPNFGGDMGLQIPKAERRAGFSLRDALRLR
CGRGWKDAERPGEHGWTRASDWAPGPGASGAFASAARSQKVGSRGWRNPRMEKGTSAVRA
SEVLTLRRIRLGRHFGPA

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_3|2037_bp
atggtggcagcaagagaaaatgaggatgatgcaaaagcggaaacccctgataaaaccatc
agatctccccgccgacttcctggtcgtcgcacgtcctcacgtatgactacactacccaga
agtctcctcttcacgtcccagcgcgggaccacaattcccagagacttcggcttcacgacg
tttctctttttgcccgatctctcccggagctggctgggcttcggccggccagaggcccac
agcgacgacgtgatccgtcgtgagcggcatacaagcaatgacccatattgctttgtggaa
ttttatgaacacagagatgcagctgctgcattagctgctatgaatgggagaaaaattttg
ggaaaggaggtcaaagtaaactgggcaaccacaccaagtagccagaaaaaagatacttcc
aatcacttccatgtgtttgttggggatttgagtccagaaattacaacagaagatatcaaa
tcagcatttgccccctttggtaaaatatcggatgcccgggtagttaaagacatggcaact
ggaaaatccaaaggctatggttttgtatctttttataacaaactggatgcagaaaatgcg
attgtgcatatgggcggtcagtggttgggtggtcgtcaaatccgaaccaattgggccact
cgtaaaccacctgcacctaaaagtacacaagaaaacaacactaagcagttgagatttgaa
gatgtagtaaaccagtcaagtccaaaaaattgtactgtgtactgtggaggaattgcgtct
gggttaacagatcagcttatgagacagacattctcaccatttggacaaattatggaaata
agagttttcccagaaaagggctattcatttgtcagattttcaacccatgaaagtgcagcc
catgccattgtttcggtgaacggtactacgattgaaggacatgtggttaaatgctattgg
ggtaaagaatctcctgatatgactaaaaacttccaacaggttgactatagtcaatggggc
caatggagccaagtgtatggaaacccacaacagtatggacagtatatggcaaatgggtgg
caagtaccgccttatggagtatacgggcaaccatggaatcaacaaggatttggagtagaa
cggttcactccaacagcaggacagatcttacaggagatcagagatggcttgccctacagg
aggagaggagtaaggacattgattgtgatctgtgcagaaagaaaggatgttaatacagat
acctcttactcaacaatttttctcagcttgaaagaactaacagacactggacttaaggga
gttcagaatgagtcaagaaatgagccattcaaatgtgactgcagttattgcctttatcac
agcatttcacaacagttatcacccaccttattctgccaattttcaccaatggtttttggc
agtttccaaaaaccaattaggtccacaaaatattgttctagaaatgtccgagagaatccg
ccgcgccgccgggctgctccttcttcctcctcgggcgcccgcggcgatgttcaaccgcgc
cgtgagccggctgagcaggaagcggccgccgtcagccgcgacgggagcgcagagctcctc
cgggagccccggggaggaagtttggctgaaagaggaacagccgcagttttctttttagtg
atggtctgggagaaaaaggagcgccccaaatctccaaactttggaggtgacatggggctc
cagattccgaaagcggaacggcgcgcgggcttctccctccgtgacgctctccgcctccgc
tgcgggcgtgggtggaaggatgccgagcgcccgggggagcacggctggacccgggcatcc
gactgggcccctgggcctggggcgtcgggggccttcgcttctgccgcgaggagccaaaag
gtgggatcgcgagggtggcggaaccccaggatggagaagggcacttctgcggtccgagcc
agcgaagttctgacgttacgaaggattcgccttggccgtcactttgggccagcctga

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_4|85_aa
MGPTFSSLWFSESHRMSAALQVLSTEAVIQETTAESAVSFMICLRSHNHLVWNILLVYLI
QCGKIQYQKAMVMEPSWRLATTKGN

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_4|258_bp
atggggcccacgttcagctccctgtggttctcagagtctcaccggatgtctgccgcgctg
caggtgctcagcacagaggcagtgattcaagagaccacagcagaatctgcagtgtctttt
atgatttgtcttcgaagtcacaaccatctcgtctggaatatcttattggtctaccttatt
cagtgtgggaagatacaataccagaaggcgatggtcatggagccatcttggaggctggct
accacaaaagggaactga

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_5|218_aa
MGPLSSQRRVMGISQDNWHKRRKTGSKRKPYDKKRKYELGHLAANTKIGPHHIHTVRVRG
GNNKYGALRRDMGNFSWGSECCTRKTRITDVVYDAPNSKLVRTKTLVENCFVLTDSTPYH
QWYESHYALPLGCKKGAKLTPEEEKTLNKKRSKKIQKKYDEREKNAKISRLLGEQFQQGK
LLACVASRLGQCGQAHVYVPGGKEMEFYLRKIKARKGK

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_5|657_bp
atggggcctctttccagccagcgccgagtgatgggcatctctcaggacaactggcacaag
cgccgcaagactggcagcaagagaaagccctacgacaagaagcggaagtatgagttgggg
cacctggctgccaacaccaagattggcccccaccacatccacacagtccgtgtgcgggga
ggtaacaataaatacggtgccctgaggcgggacatggggaatttctcctggggttcagag
tgttgtactcgcaaaacaaggatcactgatgttgtctacgatgcgcccaatagcaagctg
gtccgtaccaagaccctggtggagaactgcttcgtgctcactgacagcacaccgtaccac
cagtggtatgagtcccactatgcgctgcccctgggctgcaagaagggagccaaactgact
cctgaggaagaaaagactttaaacaaaaaacgatctaaaaaaattcagaagaaatacgat
gaaagggaaaagaatgccaaaatcagccgtctcctgggggagcagttccagcagggcaag
cttcttgcatgcgtcgcttcaaggctgggacagtgtggccaagcccatgtctatgtgcca
gggggcaaggagatggagttctatcttaggaaaatcaaggcccggaaaggcaaataa

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_6|637_aa
MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
ASGRCVKEPQSVRLGALLSQEFVCRAGLFPRAAAQPVGEAQNVLSEMHEVLSEMHEVLSE
MHEVLSSWLAQGLSGSRGFPQEELHLLKACLRTPSPGRETPSSANGPSREGSRLPPAREG
HPVYPQLRPGYIPIPVLHEGAENRQPGMQRFRTEAAAAAPQRSQSPLRGMPETTQPDKQC
GQVAAAAAAQPPASHGPERSQSPAASDCSSSSSSASLPSSGRSSLGSHQLPRGYISIPVI
HEQNVTRPAAQPSFHQAQKTHYPAQQGEYQTHQPVYHKIQGDDWEPRPLRAASPFRSSVQ
GASSREGSPARSSTPLHSPSPIRVHTVVDRPQQPMTHRETAPVSQPENKPESKPGPVGPE
LPPGHIPIQVIRKEVDSKPVSQKPPPPSEKSVATEERAAPSTAPAEATPPKPGEAEAPPK
HPGVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQ
ARRDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKN
AGNAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_6|1914_bp
atgagcgccgccacccactcgcccatgatgcaggtggcgtccggcaacggtgaccgcgac
cctttgccccccggatgggagatcaagatcgacccgcagaccggctggcccttcttcgtg
gaccacaacagccgcaccactacgtggaacgacccgcgcgtgccctctgagggccccaag
gcctcagggagatgtgtcaaggaaccacagtcagtgcggctgggcgccctgctcagccag
gagtttgtctgcagagcaggcctcttccccagagcagcggcccagcctgttggagaggca
caaaatgtgctcagcgagatgcacgaggtgctcagcgagatgcacgaggtgctcagcgag
atgcatgaggtgctcagctcgtggctggctcaagggctttctggatccaggggcttcccc
caggaggagctgcatctcctcaaggcctgtctgaggactccaagccctggaagggagact
ccatcctctgccaatggcccttcccgggagggctctaggctgccgcctgctagggaaggc
caccctgtgtacccccagctccgaccaggctacattcccattcctgtgctccatgaaggc
gctgagaaccggcagcctgggatgcagcgattccgaactgaggcggcagcagcggctcct
cagaggtcccagtcacctctgcggggcatgccagaaaccactcagccagataaacagtgt
ggacaggtggcagcggcggcggcagcccagcccccagcctcccacggacctgagcggtcc
cagtctccagctgcctctgactgctcatcctcatcctcctcggccagcctgccttcctcc
ggcaggagcagcctgggcagtcaccagctcccgcgggggtacatctccattccggtgata
cacgagcagaacgttacccggccagcagcccagccctccttccaccaagcccagaagacg
cactacccagcgcagcagggggagtaccagacccaccagcctgtgtaccacaagatccag
ggggatgactgggagccccggcccctgcgggcggcatccccgttcaggtcatctgtccag
ggtgcatcgagccgggagggctcaccagccaggagcagcacgccactccactccccctcg
cccatccgtgtgcacaccgtggtcgacaggcctcagcagcccatgacccatcgagaaact
gcacctgtttcccagcctgaaaacaaaccagaaagtaagccaggcccagttggaccagaa
ctccctcctggacacatcccaattcaagtgatccgcaaagaggtggattctaaacctgtt
tcccagaagcccccacctccctctgagaagagtgtggctacagaagagagggcagccccc
agcactgcccctgcagaagctacacctccaaaaccaggagaagccgaggctcccccaaaa
catccaggagtgctgaaagtggaagccatcctggagaaggtacaggggctggagcaggct
gtagacaactttgaaggcaagaagactgacaaaaagtacctgatgatcgaagagtatttg
accaaagagctgctggccctggattcagtggaccccgagggacgagccgatgtgcgtcag
gccaggagagacggtgtcaggaaggttcagaccatcttggaaaaacttgaacagaaagcc
attgatgtcccaggtcaagtccaggtctatgaactccagcccagcaaccttgaagcagat
cagccactgcaggcaatcatggagatgggtgccgtggcagcagacaagggcaagaaaaat
gctggaaatgcagaagatccccacacagaaacccagcagccagaagccacagcagcagcg
acttcaaaccccagcagcatgacagacacccctggtaacccagcagcaccgtag

>gi568815588r:119475668_119688248|GENSCAN_predicted_peptide_7|117_aa
METDPKVPDRAWSSGTLFLLNAKLIYAYRAHRKDQDRNNVNRKNMLPRMRLQYFTLYEKG
KMKALPGGSNDQNREYPTSFMLGGLELPPPCRMGKERGLDPDHKRRFLDLEQEGIQX

>gi568815588r:119475668_119688248|GENSCAN_predicted_CDS_7|351_bp
atggaaacggatccaaaagtgccggatcgagcttggagctctggtaccctctttctcctg
aatgccaaacttatctatgcctacagggcacacagaaaggaccaggatcgaaataatgtt
aacaggaaaaacatgcttcctcgtatgagactgcagtatttcaccttgtatgagaaagga
aaaatgaaggctcttcctggtggcagtaatgatcagaaccgggagtacccaacttctttc
atgcttgggggactagagctgccccctccatgcagaatgggcaaagaaaggggtcttgat
ccagaccacaagagaaggttcttggatctggagcaagaaggaattcaggnn