Result of FASTA (omim) for pF1KB7928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7928, 200 aa
  1>>>pF1KB7928 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7106+/-0.000258; mu= 13.8622+/- 0.016
 mean_var=89.1171+/-17.620, 0's: 0 Z-trim(121.8): 17  B-trim: 395 in 2/55
 Lambda= 0.135861
 statistics sampled from 38892 (38911) to 38892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.456), width:  16
 Scan time:  6.100

The best scores are:                                      opt bits E(85289)
XP_005262156 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_016884824 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_005262160 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_005262159 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_001305399 (OMIM: 300506) TSC22 domain family pr ( 200) 1327 268.7 4.4e-72
XP_011529186 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_932174 (OMIM: 300506) TSC22 domain family prote ( 200) 1327 268.7 4.4e-72
XP_005262157 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_001305397 (OMIM: 300506) TSC22 domain family pr ( 200) 1327 268.7 4.4e-72
NP_004080 (OMIM: 300506) TSC22 domain family prote ( 134)  591 124.3 8.6e-29
NP_001015881 (OMIM: 300506) TSC22 domain family pr (  77)  493 104.9 3.4e-23
NP_006013 (OMIM: 607715) TSC22 domain family prote ( 144)  405 87.9 8.6e-18
NP_904358 (OMIM: 607715) TSC22 domain family prote (1073)  404 88.3 4.7e-17
NP_112197 (OMIM: 611914) TSC22 domain family prote ( 395)  344 76.3 7.5e-14
NP_001289972 (OMIM: 611914) TSC22 domain family pr ( 395)  344 76.3 7.5e-14
NP_001230726 (OMIM: 607715) TSC22 domain family pr (  86)  311 69.3   2e-12
NP_001230727 (OMIM: 607715) TSC22 domain family pr (  86)  311 69.3   2e-12


>>XP_005262156 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
              190       200

>>XP_016884824 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_016 PEEPAPESPQVPEAPGGSAV
              190       200

>>XP_005262160 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
              190       200

>>XP_005262159 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
              190       200

>>NP_001305399 (OMIM: 300506) TSC22 domain family protei  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
NP_001 PEEPAPESPQVPEAPGGSAV
              190       200

>>XP_011529186 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_011 PEEPAPESPQVPEAPGGSAV
              190       200

>>NP_932174 (OMIM: 300506) TSC22 domain family protein 3  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
NP_932 PEEPAPESPQVPEAPGGSAV
              190       200

>>XP_005262157 (OMIM: 300506) PREDICTED: TSC22 domain fa  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
              190       200

>>NP_001305397 (OMIM: 300506) TSC22 domain family protei  (200 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1415.1  bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
              130       140       150       160       170       180

              190       200
pF1KB7 PEEPAPESPQVPEAPGGSAV
       ::::::::::::::::::::
NP_001 PEEPAPESPQVPEAPGGSAV
              190       200

>>NP_004080 (OMIM: 300506) TSC22 domain family protein 3  (134 aa)
 initn: 591 init1: 591 opt: 591  Z-score: 637.9  bits: 124.3 E(85289): 8.6e-29
Smith-Waterman score: 591; 98.9% identity (100.0% similar) in 95 aa overlap (106-200:40-134)

          80        90       100       110       120       130     
pF1KB7 PVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAV
                                     .:::::::::::::::::::::::::::::
NP_004 MEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAV
      10        20        30        40        50        60         

         140       150       160       170       180       190     
pF1KB7 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
      70        80        90       100       110       120         

         200
pF1KB7 GGSAV
       :::::
NP_004 GGSAV
     130    




200 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:11:08 2016 done: Sat Nov  5 10:11:09 2016
 Total Scan time:  6.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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