FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7925, 192 aa
  1>>>pF1KB7925 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9959+/-0.000687; mu= 2.7812+/- 0.042
 mean_var=153.9948+/-31.190, 0's: 0 Z-trim(116.5): 4  B-trim: 424 in 1/51
 Lambda= 0.103353
 statistics sampled from 17137 (17141) to 17137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.527), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS43971.1 DMRTC1B gene_id:728656|Hs108|chrX      ( 192) 1301 204.2   4e-53
CCDS35333.2 DMRTC1 gene_id:63947|Hs108|chrX        ( 192) 1301 204.2   4e-53


>>CCDS43971.1 DMRTC1B gene_id:728656|Hs108|chrX           (192 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1067.3  bits: 204.2 E(32554): 4e-53
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
              130       140       150       160       170       180

              190  
pF1KB7 PIGHLGCISLLS
       ::::::::::::
CCDS43 PIGHLGCISLLS
              190  

>>CCDS35333.2 DMRTC1 gene_id:63947|Hs108|chrX             (192 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1067.3  bits: 204.2 E(32554): 4e-53
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
              130       140       150       160       170       180

              190  
pF1KB7 PIGHLGCISLLS
       ::::::::::::
CCDS35 PIGHLGCISLLS
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:10:31 2016 done: Sat Nov  5 10:10:31 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]