GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:01:29

Sequence gi568815580r:47741830_47996756 : 254927 bp : 40.82% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5902   6089  188  0  2   65   64   108 0.346   4.90
 1.02 Term +   6765   7275  511  0  1   28   38   290 0.511  10.86
 1.03 PlyA +   7885   7890    6                              -1.75

 2.03 PlyA -  10619  10614    6                              -0.45
 2.02 Term -  11332  11235   98  2  2   85   50    95 0.488   2.55
 2.01 Init -  16177  15901  277  1  1   78   23   239 0.586  13.64
 2.00 Prom -  18840  18801   40                              -8.35

 3.00 Prom +  27882  27921   40                              -4.25
 3.01 Init +  29326  29580  255  0  0   53  110    96 0.489   5.58
 3.02 Intr +  32647  32699   53  0  2   75   55    76 0.411  -0.21
 3.03 Intr +  38245  38410  166  1  1   42   44   149 0.299   4.94
 3.04 Intr +  53457  53865  409  2  1   60   81   184 0.219   7.81
 3.05 Intr +  55291  55418  128  2  2   63   73    73 0.797   2.78
 3.06 Intr +  55550  55654  105  1  0   82   91    93 0.993   8.49
 3.07 Intr +  56527  56647  121  0  1  108   -3   101 0.680   2.15
 3.08 Intr +  57648  57962  315  1  0  124   56    90 0.826   4.51
 3.09 Intr +  60954  61062  109  1  1   72   60   111 0.716   5.12
 3.10 Intr +  67215  67331  117  0  0   74   34   127 0.785   4.56
 3.11 Intr +  82241  82365  125  2  2   64   62   118 0.017   6.11
 3.12 Term +  99168  99301  134  1  2   55   38   124 0.314   1.37
 3.13 PlyA +  99317  99322    6                              -0.45

 4.15 PlyA -  99436  99431    6                               1.05
 4.14 Term - 101347 101133  215  2  2   73   49   175 0.872   8.51
 4.13 Intr - 103971 103834  138  1  0  100   80    33 0.893   3.21
 4.12 Intr - 106858 106646  213  2  0  117   77    96 0.993   9.16
 4.11 Intr - 109498 109445   54  2  0   78  106    12 0.503   0.03
 4.10 Intr - 123304 123230   75  2  0   56   98    77 0.935   4.07
 4.09 Intr - 127607 127414  194  1  2  123   91   168 0.996  18.81
 4.08 Intr - 142135 141899  237  0  0   77   58   105 0.341   2.21
 4.07 Intr - 154980 154692  289  1  1   40  115   236 0.121  16.88
 4.06 Intr - 162682 162564  119  0  2   75  108    37 0.009   3.59
 4.05 Intr - 170180 170050  131  2  2   70   30   105 0.002   1.47
 4.04 Intr - 188617 188532   86  2  2  114  103    76 0.203  10.32
 4.03 Intr - 189711 189526  186  1  0  112   60   183 0.533  16.64
 4.02 Intr - 191437 191356   82  1  1   87  -17    61 0.119  -6.21
 4.01 Init - 194333 194217  117  2  0   78   74   187 0.487  16.55
 4.00 Prom - 202093 202054   40                              -7.15

 5.04 PlyA - 204063 204058    6                               1.05
 5.03 Term - 213737 213587  151  1  1   78   49   239 0.899  15.40
 5.02 Intr - 214669 214399  271  2  1   59   41   215 0.623   9.58
 5.01 Init - 216600 216447  154  0  1   85   91    48 0.847   4.99
 5.00 Prom - 221818 221779   40                              -4.35

 6.00 Prom + 225821 225860   40                              -7.45
 6.01 Init + 232968 233024   57  2  0  105   78    45 0.691   6.56
 6.02 Term + 238133 238249  117  1  0  122   49    65 0.775   3.56
 6.03 PlyA + 238518 238523    6                               1.05

 7.04 PlyA - 239042 239037    6                               1.05
 7.03 Term - 242295 242002  294  0  0   45   55   207 0.703   7.42
 7.02 Intr - 242744 242634  111  2  0   81   97    31 0.696   2.96
 7.01 Init - 245100 245047   54  0  0  107   70    18 0.630   3.24

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  73049  73270  222  1  0   71   42   163 0.828   4.91


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_1|232_aa
MGRSEGTRGTLSWSQLAQSHGGGEVNQPEFLLYSLPADRNKGQEEQALQLKGSLGGPSQI
PCRVTLEVPEGPEDLEGPKDDSGRDSVPDPTIWFVSALGVSCKTPHRGSQFPHPSCFRRS
GIRRIRGHTLGKSLTVSQMSEGTLWPPGSQICPPHEPRPRSSSAVRLNVNTQGKLQGKHT
ADKNLMLYVTKENEYLIRAFMRNHITRQPHAAPLPSPAPGSEAVKRLATSSS

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_1|699_bp
atgggacgcagcgaaggcacccgtgggaccctgtcctggtcccagcttgcccagtctcac
ggtggtggtgaagtgaaccaacctgagtttcttctctattctctgcctgctgacaggaac
aaaggccaggaggaacaggccttacagctaaaaggttcccttggaggcccatctcaaatt
ccctgcagggtgacgctggaggttcccgaggggcctgaagacttagaaggtcccaaagat
gacagtggtagagactccgtgccggaccccacaatctggtttgtgtcagccctgggagtg
tcatgcaagacccctcaccgcgggtctcagtttccccatccatcctgcttccgtcgcagc
ggtattagaaggatccggggacacacgcttgggaaaagtctaacggtgtcacagatgtca
gagggaaccctctggcctccaggatcacagatctgtcctccccacgagccaaggcccagg
agttcctctgcagtccgcctgaacgttaacacgcagggaaaacttcagggaaaacataca
gctgataaaaatttaatgctatatgtaacaaaggagaatgaatatttaatccgtgctttt
atgcgaaaccacataaccaggcagccccacgcggcgcccctcccctcgcccgcgcccggc
agcgaagcagttaagcggctggcaacaagcagctcctaa

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_2|124_aa
MGWTPALTNLTFWTLLIVDQSGKQRSMAGGGLAEEQPERSDWAHDPDHYLPSHLPRTAGP
VLGVEILEVLPAEDTVLTDGLALAFWVSCRDWGHSGWHVAGGGIEAGTWGKCGGQLEATA
MVQV

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_2|375_bp
atgggctggacccctgctctcacgaaccttacattctggacactcctgattgtggaccag
agcgggaagcagaggagcatggctggaggaggccttgcagaggagcagcctgagaggagt
gattgggcccatgaccctgatcattatctgccatctcatctccccagaacagctggccct
gttttaggggttgagatcctggaggttctgccggccgaggacacagtactcacagatggc
ctcgcccttgccttctgggtttcgtgcagggattggggtcattctggctggcatgtggca
ggtggagggatagaggcggggacatggggcaagtgtggaggacagttagaagctactgca
atggtccaggtgtga

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_3|678_aa
MNGATKRKAFPPRIAMNFTQTHSILHSQVSTETARPRHRTHEHCSQETHSCWDSRQNQGI
LAPLCLSGEPGSCLSSSEHLRILVQPPILLTNVEALYSRTPEKGSTKVKAKNNKKKTPDG
SRGTAFPKSGRCHFPKTTAATFLIPHGFPDYRTTLLRKVLLSGHGWVGAESLPHLQRQWP
LSERKAAKSTVAARRTRGPPNSGHHLDVLQAKSQRKEQWDPPLPRSQSPTPRPVLVTHSS
PGSGLWRKWPRSAPEELCRDKPQEGPWSPGRKNRARIKITTVGNSNNLQGTWVSALAPLG
KKNEHWQCGVPEKPPLWPASGWRRESRVGVTEHCGQNAHANCPREPDTAGHRELPVTAAG
SKGSSFAQYPLQARANCLQVPDAALGSRAQIPRVTGHILAPAWLKGPGETDWHKHAPLPP
PPWTYANNPARKFPLRQEPTFQGFTTRPSSHYLSPTLAPTPPELALSGLRPSPPLPCLLP
SQGQDASQTQLSPHLSLALEEHWRLLSPGSALPRGEEEAEGRQLEKGAQWAVSVSTDHAT
VTTNPSLRARLLQSGPSEKPMVPKAVLKEEFSAAVLNNRSQKQGCPPRASLGRMQDQTNN
PGKVYSVTKGQSKPNYKMIHHRYFRKNIFIKRGKELTGASSINATITGDDVMLCCFDYED
KNGNGKKRLGKVFSMVSL

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_3|2037_bp
atgaatggagccacgaaaagaaaggcctttccccccaggattgccatgaacttcacacaa
actcacagcatcctgcacagtcaagtctccactgagacagctcgaccaagacacagaact
catgaacactgcagccaggagacccactcatgctgggactcgaggcagaaccaaggaatc
cttgctcctttgtgtctttctggggaacctggtagctgtctgtcctcctctgaacatctc
agaattcttgtccagccaccaatacttctcacaaacgtggaagccctctattctagaaca
ccggagaaagggtcaactaaagttaaggcaaaaaataacaagaagaagacacctgatgga
agcagagggactgcatttcccaagagcggcagatgccattttccaaaaaccaccgcagca
acgtttctgatcccacatggatttcctgattatcggacaaccctcttacgaaaggtgttg
ctaagcggccatggctgggtaggagcagaaagcctcccccacctccagagacagtggccc
ctctcagaacggaaagctgcgaaaagcaccgtggctgccaggagaaccaggggcccgcca
aactcaggtcatcacttagacgtgctccaggcaaagagccaaagaaaagaacagtgggac
cccccactccccagaagccagtcccctacccctagacccgttctagtgactcactcctcc
ccagggagtggtctttggaggaaatggccacggagtgccccggaggagctttgcagggac
aaacctcaggaaggtccctggtctccaggaaggaaaaacagagcaaggattaaaatcaca
acggttggcaacagcaacaatctccagggcacgtgggtgtctgcactggcaccgttagga
aagaagaatgaacattggcagtgtggagtccccgagaagccacccctgtggcctgcttct
ggctggagaagagagtcacgagttggggtcacagagcactgtggtcagaatgcacatgcc
aattgcccccgggagcctgacactgctggccacagagagttgccagtcactgctgcaggc
tccaaagggtcctcctttgcccagtaccccctgcaggcacgtgccaattgcctgcaggtg
cctgatgctgcgcttggctccagagcgcagattccgagagtaacaggacacatccttgcc
cccgcgtggctcaaggggccaggggaaacagattggcataaacatgctccccttccaccc
ccaccatggacttacgctaataatccagccaggaaattcccgcttagacaggaacccacc
ttccagggctttacaaccagaccttcctctcattacctatccccgaccctggctcccacc
cctcctgaattggccttgagtggtctccgcccatccccacccctgccatgcctgttgcca
tctcaaggccaggatgcgtcccagacacaactcagcccccacctctcgttagccttggag
gaacactggcgtttgctctctccgggctcagcactgcctaggggagaagaagaggcagag
ggaagacagttggagaaaggcgcacagtgggctgtatcggtcagcacggaccatgccact
gtaacaaccaaccccagcctcagggcccggctgcttcagagcggacctagtgaaaaacca
atggtgcctaaggcggtgctgaaggaagaattctcagcagcagttctcaacaacagatca
cagaaacaaggctgtcctcctcgggcatctctggggaggatgcaggaccagaccaataac
ccgggaaaggtctattctgtcaccaagggacaatcaaagcctaactacaagatgattcat
catagatactttcggaaaaacatcttcatcaagagagggaaagaattaactggtgccagc
agtatcaatgcaactattactggtgatgatgtcatgttatgctgttttgattatgaggac
aaaaatgggaatggaaaaaagaggcttggaaaggttttcagtatggtttccttataa

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_4|711_aa
MGVHADQEQEEESVGSARAEKVDTTCTIHGTKWSQDFGEILEGFLNGRVMDPKSETLEKW
SNLDLRRASSALRGASPWDEHVSAAGLTTDGGRGGRPLQAPPTTLARDRAVTGNRLNARQ
GAGLSLSAPPSIPSEEEGTKGPGPPGSDGAGPGATLQDKTVSHDTTVSVVGSSRAYFVAQ
SRNPTGAKGSQVHFLLPDSPSICVPLSGTGGSNVSSLPVAVEYGGYCYRVKGMFVCGRWA
SSIQEAVFLAWLAAFGKNMSSILPFTPPVVKRLLGWKKSAGGSGGAGGGEQNGQEEKWCE
KAVKSLVKKLKKTGRLDELEKAITTQNCNTKCVTIPRWSTWAFLPACPDSRQKGKRKWWG
LKPISSQVSEMELDFLFNTNRINKKKTTLRYIMVKLMKEGILKQLVKNGTQHTNDRSLDG
RLQVSHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKKDEVCVNPYHYQRVETP
ETPPPGYISEDGETSDQQLNQSMDTGSPAELSPTTLSPVNHSLDLQPVTYSEPAFWCSIA
YYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRL
YYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPAFLGISEKFLGTEMQIPAVG
SCLEHTEKSKGYSGALIPSASESDILGSTVLNYIEHVLLGDEELIMGFSHI

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_4|2136_bp
atgggtgtgcatgcagaccaggaacaggaagaagagtcagtgggcagtgccagagcagaa
aaggtggatactacctgcacaatccatggcactaagtggtcacaggactttggagaaatc
ctggaaggcttcctaaatggaagagttatggacccaaagtctgagactttggagaaatgg
tctaacttagacctcaggcgcgcgtcctccgcgctgcgcggggcctccccgtgggatgag
cacgtgtccgctgccggcctcacgacggacggtggacgaggcggcaggcccctacaggcc
ccacccacgacgctggcgagggatcgggcggtcaccgggaatcgtcttaatgcgcggcaa
ggcgcgggcctctccctctccgcccccccctccatcccatcggaagaggaaggaacaaaa
ggtcccggaccccccggatctgacggggcgggacctggcgccaccttgcaggataagact
gtgtcacatgatactacggtgtctgtagttggctcctctagagcatactttgtggcacag
agtaggaatccaacaggggccaaaggtagccaagtacactttttgctgcctgatagtccc
agcatctgtgtgcctttgtctgggactggtggtagcaatgtttcctcccttcccgtggca
gtagaatatggtggttattgttacagagtgaaaggcatgtttgtgtgtgggagatgggca
agttcgatacaagaggctgttttcctagcgtggcttgctgcctttggtaagaacatgtcg
tccatcttgccattcacgccgccagttgtgaagagactgctgggatggaagaagtcagct
ggtgggtctggaggagcaggcggaggagagcagaatgggcaggaagaaaagtggtgtgag
aaagcagtgaaaagtctggtgaagaagctaaagaaaacaggacgattagatgagcttgag
aaagccatcaccactcaaaactgtaatactaaatgtgttaccataccaaggtggagcacc
tgggctttcttaccagcttgcccagattcgaggcagaaggggaagaggaaatggtggggc
ttgaaacctatcagcagtcaagtatcagaaatggagttggatttcttattcaacacaaac
aggataaataaaaagaaaaccacacttagatatatcatggtcaaactcatgaaagaggga
atcttaaagcagctggtgaaaaatggcacgcagcatacaaatgacaggtctcttgatggt
cgtctccaggtatcccatcgaaaaggattgccacatgttatatattgccgattatggcgc
tggcctgatcttcacagtcatcatgaactcaaggcaattgaaaactgcgaatatgctttt
aatcttaaaaaggatgaagtatgtgtaaacccttaccactatcagagagttgagacacca
gaaacgccacctcctggatatatcagtgaagatggagaaacaagtgaccaacagttgaat
caaagtatggacacaggctctccagcagaactatctcctactactctttcccctgttaat
catagcttggatttacagccagttacttactcagaacctgcattttggtgttcgatagca
tattatgaattaaatcagagggttggagaaaccttccatgcatcacagccctcactcact
gtagatggctttacagacccatcaaattcagagaggttctgcttaggtttactctccaat
gttaaccgaaatgccacggtagaaatgacaagaaggcatataggaagaggagtgcgctta
tactacataggtggggaagtttttgctgagtgcctaagtgatagtgcaatctttgtgcag
agccccaattgtaatcagagatatggctggcaccctgcaacagtgtgtaaaattccacca
gcctttttgggtatatcagagaagttcctgggcacagaaatgcagatacctgcagttgga
agttgtctagagcacactgaaaaatccaaagggtacagtggggcactgataccatctgcc
tcagaaagtgacatccttggaagtacagttttaaattacattgaacatgtgttgcttgga
gatgaagagttgataatgggcttttctcatatttga

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_5|191_aa
MELRRGRNQGGFQGLDDRNREASRIRYGKVYTEKNKRLRIPSTLESITCVEGNWETRSIV
RSLLNEPRTGMKTLLLGCMRFLRSGSADESPAASLHLDCVRVSQCWALSLSLITQCPLEL
LRLWLSSRSDPSLRIATGPLDRQCGSKVPAQDSGDVDTWVLVEQWNALEKDSLETKLEVT
QQQPSVSSKGH

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_5|576_bp
atggagcttaggagaggaagaaatcaaggaggattccaaggcttggatgacagaaatagg
gaagcttctagaattagatacggtaaagtgtatacagaaaagaacaaaaggctaaggatt
ccctcaaccttggagagtatcacatgtgtagaaggtaactgggaaaccagatccattgtc
agaagcttgctgaatgagcccagaaccggaatgaaaacactcctgcttggatgcatgcgc
tttctcagaagtggtagtgcagatgaatctcctgccgcctctctccatctggactgtgta
cgcgtctctcagtgctgggccctaagtctttctttaatcacacagtgccccttagagctg
ctgaggttatggctttcttcacgctctgatccaagcctaaggatagccactggtcccctg
gacagacaatgtggcagcaaggtacctgcccaggacagtggagatgtggacacctgggtg
ctggtagagcagtggaacgccctggagaaggacagcctggagacaaaacttgaggtaaca
cagcagcagccatcagtatcgtcaaagggccactag

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_6|57_aa
MAKGVAFVEPGQLHKCENELGKSPLPQVEATFSGIHLPKPMTSPTPPSGMQGPLSPA

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_6|174_bp
atggcaaaaggggttgcattcgtggaacctggacaattacataaatgtgaaaacgagctc
ggtaaatctcctttacctcaagtcgaggccaccttctctggcatccatcttcctaagccc
atgacatcccccacacctccctcagggatgcagggccctttaagccctgcttag

>gi568815580r:47741830_47996756|GENSCAN_predicted_peptide_7|152_aa
MAEHSWGTDYGALWVQEKETSQFWESTLQGAQLLYSKSASPWLQAASQAGEEQSKSLSAA
CILAYVSQGGPASPDGCELAAQIQSQLITRDVCARGEAQRQTQSHSRERRKKAREKKERG
GGSEKGQEAGQPRFFLIDEPKLLAGKPSTPEG

>gi568815580r:47741830_47996756|GENSCAN_predicted_CDS_7|459_bp
atggctgagcattcatggggaactgactatggggctctctgggtgcaggagaaggaaacc
tctcagttttgggaaagcactttgcaaggggcccagcttttatattccaagtcagccagc
ccttggcttcaggctgcttcccaagcaggggaggaacaaagcaagagtctttctgccgcc
tgtattttagcatatgtcagtcagggtggcccagcgtctccagatggctgtgagcttgct
gcacaaatccagagccagctcatcactagggacgtatgtgcacgtggagaggcccagaga
cagacgcagagccatagcagggagagaaggaaaaaggcaagggagaaaaaggagagaggg
ggagggagtgaaaagggacaggaagcaggacagcctcgattcttcctcatagatgaacct
aagcttcttgcagggaagccttctactccagaaggttga