GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:43:39

Sequence gi568815588f:47821988_48023112 : 201125 bp : 44.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  51793  51897  105  0  0   82   42   107 0.314   3.91
 1.02 PlyA +  54239  54244    6                               1.05

 2.00 Prom +  55411  55450   40                              -4.26
 2.01 Init +  59331  59395   65  2  2   64  100    43 0.601   3.72
 2.02 Intr +  63638  63771  134  2  2   59   96    75 0.620   5.69
 2.03 Intr +  73869  73938   70  1  1  122   85    14 0.027   2.74
 2.04 Intr +  74750  74777   28  2  1   77   92     1 0.017  -2.48
 2.05 Intr +  89493  89631  139  2  1  100  101    18 0.001   4.34
 2.06 Intr +  95041  95184  144  2  0  110   46    36 0.002   1.85
 2.07 Term +  99942 101128 1187  1  2   95   41  1450 0.014 132.92
 2.08 PlyA + 103269 103274    6                               1.05

 3.03 PlyA - 104948 104943    6                               1.05
 3.02 Term - 111535 111301  235  0  1   90   54    65 0.171  -0.91
 3.01 Init - 114137 114019  119  2  2   68   82   102 0.768   7.27
 3.00 Prom - 116024 115985   40                              -4.16

 4.00 Prom + 116471 116510   40                              -5.46
 4.01 Init + 119804 119897   94  1  1   59   50    71 0.312   0.94
 4.02 Intr + 136610 136657   48  0  0  121   63    34 0.080   2.85
 4.03 Intr + 142371 142447   77  1  2   56  117    72 0.653   6.13
 4.04 Intr + 144587 144710  124  1  1   95   60    53 0.307   3.36
 4.05 Term + 145734 145777   44  1  2   96   49    42 0.301  -1.58
 4.06 PlyA + 145916 145921    6                              -1.95

 5.08 PlyA - 145937 145932    6                               1.05
 5.07 Term - 146718 146314  405  0  0   39   47   332 0.105  19.39
 5.06 Intr - 169800 169693  108  0  0   58  106    25 0.437   1.78
 5.05 Intr - 170559 170308  252  0  0   41   34   141 0.256   1.63
 5.04 Intr - 171801 171642  160  2  1    5   34   143 0.302   0.59
 5.03 Intr - 173524 173395  130  2  1   68   79   166 0.557  13.45
 5.02 Intr - 175752 175690   63  1  0   97   87    85 0.966   7.99
 5.01 Init - 177778 177706   73  1  1   72   53   114 0.632   5.89
 5.00 Prom - 180624 180585   40                              -6.86

 6.04 PlyA - 181387 181382    6                               1.05
 6.03 Term - 189658 188183 1476  1  0  102   35  1396 0.979 126.32
 6.02 Intr - 190340 190289   52  1  1   80  115    21 0.976   2.91
 6.01 Intr - 196381 196281  101  1  2  137   78    44 0.965   7.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 100001 101128 1128  1  0   67   41  1459 0.828 135.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_1|34_aa
VRALQGQQAPCKGANVDSKACQDSGSSEHPVHSC

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_1|105_bp
gtcagagcacttcagggacagcaggctccgtgcaaaggggcaaatgtggacagcaaagcc
tgccaggacagcggctcctctgagcacccggtgcattcctgctaa

>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_2|588_aa
MVEEFHYRETSGTQSVVVGAGRQNQAVSGIYSFWWVLGLGDFKNEAVDLTVSVTALKGGR
LEFAPSESCHITLNGPENTRTPRRMKEGICPGDSLHCLQMTGQLFCSMSLTWVEADASSG
LDSLACTFSRKITEAVLRFPCILSCDAVCGLVLGSGGGDKSCDLDIGEWGDKAAQADNQL
GCYICLCSRAWEGGVIPQVYHLVQESWNLFTSTMNTSHLLALLLPKSPQGENRSKPLGTP
YNFSEHCQDSVDVMVFIVTSYSIETVVGVLGNLCLMCVTVRQKEKANVTNLLIANLAFSD
FLMCLLCQPLTAVYTIMDYWIFGETLCKMSAFIQCMSVTVSILSLVLVALERHQLIINPT
GWKPSISQAYLGIVLIWVIACVLSLPFLANSILENVFHKNHSKALEFLADKVVCTESWPL
AHHRTIYTTFLLLFQYCLPLGFILVCYARIYRRLQRQGRVFHKGTYSLRAGHMKQVNVVL
VVMVVAFAVLWLPLHVFNSLEDWHHEAIPICHGNLIFLVCHLLAMASTCVNPFIYGFLNT
NFKKEIKALVLTCQQSAPLEESEHLPLSTVHTEVSKGSLRLSGRSNPI

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_2|1767_bp
atggtggaggaattccactacagggagacatcaggaacacaaagtgtggttgttggagct
ggaagacaaaatcaagctgtgtcaggaatttattccttctggtgggttctcggtcttggt
gacttcaagaatgaagctgtggacctcacagtgagtgttacagctcttaaaggtgggcgt
ctggaatttgctccttcagaatcctgtcacattactcttaatggtccagaaaatacaagg
actcctcgaaggatgaaagaagggatttgccctggagacagccttcactgcttgcagatg
acaggccagttattctgtagtatgtccctcacctgggttgaggctgatgcttcttcaggg
ttggattcacttgcatgcaccttcagcaggaagatcacagaagctgtgctacgttttcct
tgcatcctgtcatgcgatgctgtgtgtggacttgtgctgggatctggaggcggagacaag
agctgtgacctagacataggggagtggggagacaaagctgctcaggcagacaaccaacta
ggctgctacatctgcctctgcagcagagcatgggagggtggcgtcatccctcaagtgtat
cacttagttcaagagtcctggaatcttttcacatccactatgaacacctctcacctcctg
gccttgctgctcccaaaatctccacaaggtgaaaacagaagcaaacccctgggcacccca
tacaacttctctgaacattgccaggattccgtggacgtgatggtcttcattgtcacttcc
tacagcattgagactgtcgtgggggtcctgggtaacctctgcctgatgtgtgtaactgtg
aggcagaaggagaaagccaacgtgaccaacctgcttatcgccaacctggccttctctgac
ttcctcatgtgcctcctctgccagccgctgaccgccgtctacaccatcatggactactgg
atctttggagagaccctctgcaagatgtcggccttcatccagtgcatgtcggtgacggtc
tccatcctctcgctcgtcctcgtggccctggagaggcatcagctcatcatcaacccaaca
ggctggaagcccagcatctcacaggcctacctggggattgtgctcatctgggtcattgcc
tgtgtcctctccctgcccttcctggccaacagcatcctggagaatgtcttccacaagaac
cactccaaggctctggagttcctggcggataaggtggtctgtaccgagtcctggccactg
gctcaccaccgcaccatctacaccaccttcctgctcctcttccagtactgcctcccactg
ggcttcatcttggtctgttatgcacgcatctaccggcgcctgcagaggcaggggcgcgtg
tttcacaagggcacctacagcttgcgagctgggcacatgaagcaggtcaatgtggtgctg
gtggtgatggtggtggcctttgccgtgctctggctgcctctgcatgtgttcaacagcctg
gaagactggcaccatgaggccatccccatctgccatgggaacctcatcttcttagtgtgc
cacttgcttgccatggcctccacctgtgtcaacccattcatctatggctttctcaacacc
aacttcaagaaggagatcaaggccctggtgctgacttgccagcagagcgcccccctggag
gagtcagagcatctgcccctgtccacagtacatacggaagtctccaaagggtccctgagg
ctaagtggcaggtccaatcccatttaa

>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_3|117_aa
MKDNIQYYSNYMAFRKRQNYGDGKKIGGCQGLTGKEVINRGCEVYQNLEEILWEERPSQT
ASPQCCKNQISSMGDFQVSSAFSQSSLYPCHSVNHSNNSQLPAEKLDPEAGLDSLQK

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_3|354_bp
atgaaagacaacatacagtattattccaactacatggctttccggaaaaggcaaaactac
ggggatggtaaaaagatcggtggttgccagggtttaacaggaaaggaggtgataaatagg
ggttgtgaggtgtatcagaaccttgaagagatactctgggaagaaaggccttcccagact
gcctctccgcagtgctgtaagaatcagatttcttctatgggggacttccaggtctcttca
gcattttctcagtcatcactgtatccctgccactcagtgaaccacagcaacaactcccag
cttccagccgagaagcttgaccctgaagctggcctcgattctctacagaagtga

>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_4|128_aa
MGQAHGNWKQHYSEGKGMWRSSELTGESIFDCLWSDVESMWPPVYAGAFGGRHCRYPTEE
ESDTVGGEGHSYPTHGCRPDWQGQEAGAKWDMSSVLAKHTLDADEPYAWETEKWGHNSNY
QFNYNKGF

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_4|387_bp
atgggccaggcccatggcaactggaagcagcactactcagaaggaaaaggcatgtggaga
agctcagagctgacaggggagtctatatttgattgcctgtggtctgatgttgagtccatg
tggcccccagtctatgccggagccttcggaggcaggcactgccgctatcccaccgaggag
gagtctgacactgtgggcggtgaaggccacagttacccgacccacggctgtaggccagac
tggcaggggcaagaggcaggagccaagtgggacatgtccagtgtcctggccaaacataca
ctggacgcagatgagccatatgcctgggaaacagagaaatggggtcacaacagtaactat
cagttcaactacaacaaaggtttctga

>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_5|396_aa
MLGGLGKLAAEGLAHRTEKATEGAIHAVEEVVKEVVGHAKETGEKAIAEAIKKAQESGDK
KMKEITETVTNTVTNAITHAAESLDKLGHCFTNQTSSSDASEWSRGVVVAGQSQAGARVS
LGGDGAEAITGLTVDQYGMLYKAPGTPQSNMKPVHERNQECLPPKKRDLPMTSCSTNHTS
SSDASEWSRGVVVAGQSQAGARVSLGGDGAEAITGLTVDQHGMLYKLQEPDMWSPSRGQP
VSLHLREKGAPEVKEMAWWKAWKYHTVNDHNCEVRKALSKQEMASASSSQRGRSGSGNFG
GGRGGGFSGNDNFGIGGNFSGLGGFGGSRGGGGYGGSGDGCNGFGNDGSNFGGGGSYNDF
GNYNNESSNFGPMKGGNFGGRSSGPCGNGGLYFAKP

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_5|1191_bp
atgctgggaggcctggggaagctggctgccgagggcctggcccaccgcaccgagaaggcc
accgagggagccattcatgccgtggaggaagtggtgaaggaggtggtgggacatgccaag
gagactggagagaaagccattgctgaagccataaagaaagcccaggagtcaggggacaaa
aagatgaaggaaatcaccgagacagtgaccaacacagtcacaaatgccatcacccatgca
gcagaaagtctggacaaacttggacactgcttcactaaccagacatcctccagtgatgcc
tctgaatggtcccgaggggttgtggtggccgggcagagccaggcaggagccagagtcagc
ctggggggtgatggagctgaggccatcaccggtctgacagtggaccagtatggcatgctg
tataaggctccaggaacaccacaaagcaatatgaaacctgttcatgagaggaaccaggaa
tgccttccaccaaagaaacgagacctccccatgaccagctgctccactaaccacacatcc
tccagtgatgcctctgaatggtcccgaggggttgtggtggccgggcagagccaggcagga
gccagagtcagcctggggggtgatggagctgaggccatcaccggtctgacagtggaccag
catggcatgctgtataagctgcaggagccagacatgtggagtcccagcagaggccaacct
gtgtctcttcatctccgtgagaaaggtgcccccgaagtgaaagagatggcctggtggaaa
gcctggaaataccatactgtgaatgaccacaactgtgaagttaggaaagccctgtcaaag
caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactttggt
ggtggtcgtggaggtggtttcagtgggaatgacaactttggtattggaggaaacttcagt
ggtcttggtggctttggtggcagtcgtggtggtggtggatatggtggcagtggggatggc
tgtaatggatttggtaatgatggaagcaattttggaggtggtggaagctacaatgatttt
ggcaattacaacaatgagtcttcaaattttggacccatgaagggaggaaattttggaggc
agaagctctggcccctgtggcaatggaggcctatactttgcaaaaccatga

>gi568815588f:47821988_48023112|GENSCAN_predicted_peptide_6|542_aa
VSTERFSQQYSSCSTIFLDDSTAIQHYLTMTIISDADRSLSIPDEQLHSFAVSTVHIMKK
RNGGGSLNNYSSSIPPTPSTSQEDPQFSVPPTANTPTPICKRSMRWSNLFTSEKGSDPDK
ERKAPENHADTIGSGRAIPIKQGMLLKRSGKWLKTWKKKYVTLCSNGVLTYYSSLGDYMK
NIHKKEIDLRTSTIKVPGKWPSLATSARAPISSSKSNGLSKDMDTGLGDSICFSPSISST
TSPKLNPPPSPHANKKKHLKKKSTNNFMIVSATGQTWHFEATTYEERDAWVQAIQSQILA
SLQSCESSKSKSQLTSQSEAMALRSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSG
IHRSLGTRLSRVRSLELDDWPVELRKVMSSIGNELANSIWEGSSQGQTKPSIKSTREEKE
RWIRSKYEEKLFLAPLPCTELSLGQQLLRATADEDLQTAILLLAHGSREEVNETCGEGDG
CTALHLACRKGNVVLEQLLIWYGVDVMARDAHGNTALTYARQASSQECINVLLQYGCPDE
CV

>gi568815588f:47821988_48023112|GENSCAN_predicted_CDS_6|1629_bp
gtatctactgagcgtttcagtcaacaatacagctcgtgttcgacaatattccttgatgac
agcacagccatccagcattatcttacaatgacaataatatcagatgcagatagatctttg
agcatacctgatgaacagttacactcatttgcggtttccaccgtgcacattatgaagaaa
agaaatggaggtgggagtttaaataactattcctcctccattccaccgactcccagcacc
agccaggaggaccctcagttcagtgttcctcccactgccaacacacccacccccatttgc
aagcggtccatgcgctggtccaacctgtttacatctgagaaagggagtgacccagacaaa
gagaggaaagccccggagaatcatgctgacaccatcgggagcggcagagccatccccatt
aaacagggcatgctcttaaagcgaagtgggaaatggctgaagacatggaaaaagaaatac
gtcaccctgtgttccaatggcgtgctcacctattattcaagcttaggtgattatatgaag
aatattcataaaaaagagattgaccttcggacatctaccatcaaagtcccaggaaagtgg
ccatccctagccacatcagcccgtgcacccatctccagctctaaaagcaatggcctatcc
aaggacatggacaccgggctgggtgactccatatgcttcagccccagtatctccagcacc
accagccccaagctcaacccacccccctctcctcatgccaataaaaagaaacacctaaag
aagaaaagcaccaacaactttatgattgtgtctgccactggccaaacgtggcactttgaa
gccacgacgtatgaggagcgggatgcctgggtccaagccatccagagccagatcctggcc
agcctgcagtcatgcgagagcagtaaaagcaagtcccagctgaccagccagagtgaggcc
atggccctgcggtcgatccaaaacatgcgtgggaacgcccactgtgtggactgtgagacc
cagaatcctaagtgggccagtttgaacttgggagtcctcatgtgtattgaatgctcaggt
atccaccgcagtcttggcacccgcctttcccgtgtgcgatctctggagctggatgactgg
ccagttgagctcaggaaggttatgtcgtctattggcaatgagctagccaacagcatctgg
gaagggagcagccaggggcagacaaaaccctcaataaagtccacgagggaagagaaggaa
cggtggatccgttccaaatatgaggagaagctctttctggccccactaccctgcactgag
ctgtctctgggccagcagctgctgcgggccaccgctgatgaggacctgcagacagccatc
ctgctgctggcacatggctcccgtgaggaggtgaacgagacctgtggggagggagacggc
tgcacggcactccatctggcctgccgcaaggggaatgtggtcctggagcagctcctgatc
tggtacggggtggacgtcatggcccgagatgcccacgggaacacagcgctgacctacgcc
cggcaggcctccagccaggagtgcatcaacgtgcttctgcagtacggctgccccgacgag
tgcgtgtag