GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:40:39

Sequence gi568815596f:218034802_218235881 : 201080 bp : 44.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +     44    234  191  0  2   44   80   150 0.560   9.10
 1.02 Intr +    280    383  104  0  2   69   92    25 0.313  -0.03
 1.03 Intr +   8839   8954  116  1  2   70   81    92 0.854   6.79
 1.04 Term +  23794  23912  119  2  2  100   45    78 0.068   3.40
 1.05 PlyA +  24338  24343    6                               1.05

 2.02 PlyA -  24381  24376    6                              -1.75
 2.01 Sngl -  25942  25538  405  1  0   85   47   514 0.679  43.28
 2.00 Prom -  27009  26970   40                              -8.26

 3.00 Prom +  27091  27130   40                              -6.66
 3.01 Init +  28564  28621   58  0  1   67   75    79 0.900   5.97
 3.02 Intr +  30719  30838  120  0  0   95   46    57 0.758   2.67
 3.03 Intr +  33035  33085   51  0  0  119   59    59 0.822   4.98
 3.04 Intr +  35952  36058  107  1  2   96   75   135 0.502  12.93
 3.05 Intr +  37573  37698  126  0  0   73   63    93 0.985   6.18
 3.06 Intr +  37978  38084  107  0  2   78   75   101 0.955   6.81
 3.07 Intr +  38442  38585  144  0  0   37   70   158 0.406   8.30
 3.08 Intr +  39015  39084   70  0  1  114   46   -42 0.494  -6.62
 3.09 Intr +  40292  40939  648  1  0   92  100   205 0.386  14.24
 3.10 Intr +  41626  41732  107  0  2  113   91   142 0.994  16.01
 3.11 Intr +  48309  48455  147  0  0  106   72   180 0.840  17.55
 3.12 Intr +  54451  54561  111  1  0   77  103    44 0.760   4.29
 3.13 Term +  55151  55253  103  2  1  103   47    44 0.623  -0.45
 3.14 PlyA +  58945  58950    6                               1.05

 4.02 PlyA -  59887  59882    6                               1.05
 4.01 Sngl -  62128  61919  210  1  0   60   42   187 0.321   6.49
 4.00 Prom -  68266  68227   40                              -2.46

 5.02 PlyA -  68550  68545    6                              -0.45
 5.01 Sngl -  69382  68642  741  1  0   86   43   265 0.861  18.01
 5.00 Prom -  71462  71423   40                              -4.96

 6.03 PlyA -  71631  71626    6                               1.05
 6.02 Term -  72819  72656  164  1  2   82   53   129 0.960   6.90
 6.01 Init -  73134  72903  232  0  1   60   71    94 0.955   3.32
 6.00 Prom -  74676  74637   40                              -9.55

 7.00 Prom +  76694  76733   40                              -2.26
 7.01 Init +  78116  78220  105  1  0   72   72    97 0.606   6.72
 7.02 Intr +  78422  78593  172  1  1   44   74   101 0.922   3.82
 7.03 Intr +  86881  87006  126  2  0   29   79    63 0.157   0.15
 7.04 Intr +  94513  94564   52  2  1  107  100    -8 0.030   0.27
 7.05 Term +  99976 101083 1108  1  1  103   47  1190 0.060 107.94
 7.06 PlyA + 102424 102429    6                               1.05

 8.02 PlyA - 105317 105312    6                               1.05
 8.01 Sngl - 130410 129358 1053  0  0   61   48  1233 0.730 113.76
 8.00 Prom - 143040 143001   40                              -0.16

 9.00 Prom + 146626 146665   40                              -2.96
 9.01 Init + 148658 148663    6  1  0   84   99     0 0.294   1.67
 9.02 Term + 166267 166479  213  0  0    9   48   237 0.229   9.03
 9.03 PlyA + 166978 166983    6                               1.05

10.00 Prom + 178726 178765   40                              -2.46
10.01 Init + 182291 182333   43  1  1   97   37   106 0.460   4.98
10.02 Intr + 182662 182743   82  2  1   55   88   234 0.405  18.80
10.03 Intr + 191119 191153   35  1  2  113  115    14 0.990   4.47
10.04 Intr + 193937 194049  113  0  2   86   94    72 0.954   7.70
10.05 Intr + 199551 199596   46  2  1   76   91    31 0.013   0.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_1|176_aa
XQPSDTEETTTGIAAAELHGLPVPPGGEKEEKQEQVLKTKRKLAAVPATTMDQPPFGQQV
TLPQRPGSCLYHFFPAQSLGTDSGSRAALSCPSQPGSPGWGKCMLIGPSAATGGHKKKHH
KLHLWSTGLAAQPPDFEGQWGARRDLMCEIWKRELEQQFHSASAQEGQCKVPDTTI

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_1|531_bp
ncccaaccaagcgacacggaagagacaaccacaggaatagcagctgcggagctccatggc
ctccctgtgccccctggtggcgagaaggaagaaaagcaagagcaggtgctgaaaacgaaa
aggaaactagcagcagtcccagctaccacaatggatcagcccccatttggccaacaggtg
actctaccccagcgccctggatcctgcctctaccacttcttccctgcgcagtcactaggg
acggactctggcagcagagccgcgctgtcgtgccccagccagccaggctctcctggatgg
gggaagtgcatgctgattggtccatcagcagccacaggtgggcacaagaaaaagcaccac
aagctccacctctggtccacaggactggcagcccagcccccagactttgaaggtcagtgg
ggggccagaagggacctcatgtgtgagatctggaagcgggaattggagcagcagtttcat
tctgcttcagctcaggaaggtcagtgcaaggtgccagacaccaccatatga

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_2|134_aa
MLFCYRFTLHTLFKAHMGQKHWTMWVIFAVVLIFLLCWLPYNLVLLADTLMGTQMTNETC
ERRNDINQALDATEILGILHSYLNPLIYAFIGQKFCHGLLKIIAIHGLISKDSLPKDSRP
SFVGSSSGHTSTTL

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_2|405_bp
atgctgttctgctacagattcaccctgcatacgctgtttaaggcccatatggggcagaag
cactggaccatgtgggtcatctttgctgttgtcctcattttcctgctctgctggctgccc
tacaacctggtcctgctggcagacaccctcatgggaacccagatgaccaatgagacctgt
gagcgccgcaacgacatcaaccaggccctggatgccactgagattctgggcatccttcac
agctacctcaatcccctcatctacgccttcattggccagaagttttgccatggacttctc
aagattatagccatacacggcttgatcagcaaggactccctgcccaaagacagcaggcct
tcctttgttggctcttcttcagggcacacttccactactctctaa

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_3|632_aa
MPKNNVGEEVEKSELSHIAEEPLNEVGVWDKGFPGQEWWLVVGVAAVAGKKLVSQKKAAT
WPNRHPLIRVKAGCVGAAVSAILQGYGDGQGPVTDTSAELHRLCGCLELLLQFDQKEQKS
FLGPRKDYWDFLCTALRRQRGNMEPIHFVRSQDKLKTPLGKGRAFIRFCLARGQLAEALQ
LCLLNSELTREWYGPRSPLLCPERQEDILDSLYALNGVAFELDLQQPDLDGAWPMFSESR
CSSSTQTQGRRPRKNKDAPKKIPAAYGGPENVQIEDSHTSQAICLQDAPSGQQLAGLPRS
QQQRHLPFFLEKKGESSRKHRYPQSMWEPEGKELQLDQEERAPWIEIFLGNSTPSTQGQG
KGAMGTQKEVIGMEAEVTGVLLVAEGQRTTEGTHKKEAEWSHVQRLLMPSPRGAVEGAVS
GSRQGSGGSSILGEPWVLQGHATKEDSTVENPQVQTEVTLVARREEQAEVSLQDEIKSLR
LGLRKAEEQAQRQEQLLREQEGELQALREQLSRCQEERAELQAQLEQKQQEAERRDAMYQ
EELGGQRDLVQAMKRRVLELIQEKDRLWQRLQHLSSMAPECCVACSKIFGRFSRRYPCRL
CGGLLCHACSMDYKKRDRCCPPCAQGREAQVT

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_3|1899_bp
atgcccaagaacaatgtgggtgaggaagtggaaaagtcagaactctcccacatcgcagag
gagccactgaatgaggtgggtgtctgggacaagggattcccaggacaggagtggtggctg
gtggtgggagtagcagctgtggctggcaagaagctggtttcccagaagaaggcagcgacc
tggcccaacaggcaccccctcatccgtgtcaaagctggctgtgtgggagctgccgtctct
gccatcctccagggctatggggatgggcaggggccagtgacggacaccagtgccgagctg
cacagactctgtggctgcctggagctgctgctgcagtttgaccagaaagagcagaagagc
ttcctggggcctcggaaggattactgggactttctctgcactgccctacgacggcagcgg
ggaaacatggagccaatccactttgtccgttcccaggacaagttgaagacccctctgggg
aaaggccgtgccttcatccgcttctgcctggcccgtgggcagctggctgaggccctgcag
ctttgcctcctgaactcagagctcaccagggaatggtatggaccccggagccctctgctc
tgcccagaacgccaagaagacatcctggactctctctatgctctcaatggggtggccttc
gagttggacctccagcagccagacctggatggagcctggcccatgttctcagagtcacgc
tgctccagttccacccaaacccagggaaggagacccagaaaaaacaaagatgccccaaag
aagatcccagccgcatatggagggcctgaaaatgtccagattgaggactcacacaccagt
caagccatctgtctgcaagatgcacccagtggacagcagctggcagggcttcccaggtcc
cagcaacaaaggcatcttcctttctttttggaaaagaagggggaaagttccaggaaacat
aggtacccccagagcatgtgggagccagaagggaaggagcttcagctagaccaggaggaa
agagccccatggattgagatcttcctggggaactcaacacccagcacccagggacagggg
aagggggctatgggcactcagaaggaggtgatagggatggaggctgaggtcacaggggtt
ctgctggttgcagagggtcagagaacaacagaggggactcacaaaaaggaagcagagtgg
agtcacgtccagaggctgctgatgcccagccccagaggggctgtagagggagcagtatca
gggagcaggcaggggtcggggggctctagcatcctgggggagccctgggtccttcaggga
cacgcaacaaaggaagactctaccgtggagaatccacaagtgcaaacagaagtgaccctt
gtggccagaagggaggagcaagccgaggtgtccctgcaggacgagatcaagagcctcaga
cttgggctccggaaggctgaggagcaggcccagcgccaggagcagctgctgagggagcag
gagggggagctgcaggcacttcgggagcagctcagcaggtgtcaggaagagagagccgag
ctgcaggcacagctggagcagaagcaacaggaggctgagaggagggatgccatgtaccag
gaggagcttggagggcagcgggacttggtccaggccatgaagaggcgggtgttggaactg
atccaagagaaggaccgcctgtggcagaggctccagcatctctcttccatggctcccgag
tgctgtgtggcctgtagcaagatctttggccgattttctcggcggtatccatgcaggctc
tgtggaggcctgctctgccatgcttgctccatggattacaagaagagagaccgctgctgc
ccaccctgcgcccagggaagagaagcccaggtcacctga

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_4|69_aa
MLNITNHQGNANENWNEMPPYSCKNGHNSKVKKTIDVGMDVVKRDHFYTAGENAKYNHYG
KQCGDFLKN

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_4|210_bp
atgctcaacatcactaatcatcagggaaatgcaaatgaaaactggaatgagatgccacct
tactcctgcaagaatggccataattcaaaagtcaaaaaaacaatagatgttggcatggat
gtggtgaaaagagaccacttttacactgctggtgagaatgcaaagtacaaccactatgga
aaacagtgtggggatttcttaaagaactaa

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_5|246_aa
MAMLPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKIILSQKNKAGGITLPD
FKLYYKAIVTKSAWYWYQNRDIDQWNRIEPPEIIPHIYNYLIFDKPDKNKKWGKDSLFNK
WCWENWLAICRKLELDPFLTSYTKINSRWIKDLNITPKIIKTLEENLGNTVQDIGMGKDF
MSKTPKAMATKAKIDKWDLIKPKSFCTAKETTIRVNRQPTEWEKIFAFYPSDKGLISRIY
KELKQM

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_5|741_bp
atggccatgctgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg
actttcttcacagaactggaaaaaactactttaaagttcatatggaaccaaaaaagagcc
cgcattgccaagataatcctaagccaaaagaacaaagctggaggcatcacgctacctgac
ttcaagctatactacaaggctatagtaaccaaatcagcatggtactggtaccaaaacaga
gatatagaccaatggaacagaatagagcccccggaaataataccacacatctacaactat
ctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctggaactggatcccttccttaca
tcttatacaaaaattaattcaagatggattaaagacttaaatattacacctaaaatcata
aaaaccctagaagaaaacctaggtaataccgttcaggacataggcatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaaccaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctaca
gagtgggagaaaatttttgctttctacccatctgacaaagggctaatatccagaatctac
aaagaacttaaacaaatgtag

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_6|131_aa
MKLPEEGSADSNICRSAIFAVLHPPLVIPRQTGSGVDLQQTPTDLKLRVLTVRRKTNKRK
GHPHQNPICTSPSSKTKEECSSLPGMEQSWMENDFDELREEGFRQSVITNFSELKEDVGT
HHKEAKNLEKR

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_6|396_bp
atgaagcttccagaagaaggatcagcagacagcaacatttgccgttctgcaatatttgct
gttttgcaccctccactggtgatacccaggcaaacagggtctggagtggacctccagcaa
actccaacagacctgaagctgagggtcctgactgttagaaggaaaactaacaaacggaaa
ggacatccacaccaaaaccccatctgtacatcaccatcatcaaagaccaaagaggaatgc
agctccttgccaggaatggaacaaagttggatggagaatgactttgacgagttgagagaa
gaaggcttcagacaatcggtaataacaaatttctctgagctaaaggaagatgttggaacc
catcacaaagaagctaaaaaccttgaaaaaagatga

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_7|520_aa
MGQVWALVCSTLEHFHTDDEEEGEYNEVTEEVTEQAGIRQARQEGDIEAWQFPVRIHPPD
QQGNIIATFEPFPFKFGKAHLVDYIKACDAIGGVKLQAFTVSVTALKGGAYRVVCYSWQV
RGLTDFRSEAADLHSHSCSSGGVLQVKSPATQSGFKFTSKMEDFNMESDSFEDFWKGEDL
SNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFLLSLLGNSLVMLVILYSRVGR
SVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACI
SVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPVLLFRRTVYSSNVSPACYEDM
GNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLIF
LLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATEILGILHSCLNPLIYAFIGQK
FRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_7|1563_bp
atgggacaagtgtgggctctggtttgttccaccttggaacattttcacactgatgatgag
gaggaaggcgagtataacgaagtaacagaagaggttacagagcaggcaggaattcggcaa
gctagacaagagggtgatatagaggcttggcagttccctgttagaatacaccccccagat
caacaaggaaatattatagctacatttgagccttttccttttaaatttgggaaagcacat
ttagttgattatatcaaggcctgtgatgctatcggaggagtgaagctgcaggccttcaca
gtgagtgttacagctcttaaaggtggtgcatacagagttgtttgttactcctggcaggtt
cgtggtctcactgacttcaggagtgaagccgcagaccttcacagtcacagctgctcttct
ggaggtgtcctacaggtgaaaagcccagcgacccagtcaggatttaagtttacctcaaaa
atggaagattttaacatggagagtgacagctttgaagatttctggaaaggtgaagatctt
agtaattacagttacagctctaccctgcccccttttctactagatgccgccccatgtgaa
ccagaatccctggaaatcaacaagtattttgtggtcattatctatgccctggtattcctg
ctgagcctgctgggaaactccctcgtgatgctggtcatcttatacagcagggtcggccgc
tccgtcactgatgtctacctgctgaacctagccttggccgacctactctttgccctgacc
ttgcccatctgggccgcctccaaggtgaatggctggatttttggcacattcctgtgcaag
gtggtctcactcctgaaggaagtcaacttctatagtggcatcctgctactggcctgcatc
agtgtggaccgttacctggccattgtccatgccacacgcacactgacccagaagcgctac
ttggtcaaattcatatgtctcagcatctggggtctgtccttgctcctggccctgcctgtc
ttacttttccgaaggaccgtctactcatccaatgttagcccagcctgctatgaggacatg
ggcaacaatacagcaaactggcggatgctgttacggatcctgccccagtcctttggcttc
atcgtgccactgctgatcatgctgttctgctacggattcaccctgcgtacgctgtttaag
gcccacatggggcagaagcaccgggccatgcgggtcatctttgctgtcgtcctcatcttc
ctgctctgctggctgccctacaacctggtcctgctggcagacaccctcatgaggacccag
gtgatccaggagacctgtgagcgccgcaatcacatcgaccgggctctggatgccaccgag
attctgggcatccttcacagctgcctcaaccccctcatctacgccttcattggccagaag
tttcgccatggactcctcaagattctagctatacatggcttgatcagcaaggactccctg
cccaaagacagcaggccttcctttgttggctcttcttcagggcacacttccactactctc
taa

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_8|350_aa
MSNITDPQMWDFDDLNFTGMPPADEDYSPCMLETETLNKYVVIIAYALVFLLSLLGNSLV
MLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVN
FYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHP
NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMGQKHRA
MRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCL
NPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVNVSSNL

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_8|1053_bp
atgtcaaatattacagatccacagatgtgggattttgatgatctaaatttcactggcatg
ccacctgcagatgaagattacagcccctgtatgctagaaactgagacactcaacaagtat
gttgtgatcatcgcctatgccctagtgttcctgctgagcctgctgggaaactccctggtg
atgctggtcatcttatacagcagggtcggccgctccgtcactgatgtctacctgctgaac
ctggccttggccgacctactctttgccctgaccttgcccatctgggccgcctccaaggtg
aatggctggatttttggcacattcctgtgcaaggtggtctcactcctgaaggaagtcaac
ttctacagtggcatcctgctgttggcctgcatcagtgtggaccgttacctggccattgtc
catgccacacgcacactgacccagaagcgtcacttggtcaagtttgtttgtcttggctgc
tggggactgtctatgaatctgtccctgcccttcttccttttccgccaggcttaccatcca
aacaattccagtccagtttgctatgaggtcctgggaaatgacacagcaaaatggcggatg
gtgttgcggatcctgcctcacacctttggcttcatcgtgccgctgtttgtcatgctgttc
tgctatggattcaccctgcgtacactgtttaaggcccacatggggcagaagcaccgagcc
atgagggtcatctttgctgtcgtcctcatcttcctgctttgctggctgccctacaacctg
gtcctgctggcagacaccctcatgaggacccaggtgatccaggagagctgtgagcgccgc
aacaacatcggccgggccctggatgccactgagattctgggatttctccatagctgcctc
aaccccatcatctacgccttcatcggccaaaattttcgccatggattcctcaagatcctg
gctatgcatggcctggtcagcaaggagttcttggcacgtcatcgtgttacctcctacact
tcttcgtctgtcaatgtctcttccaacctctga

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_9|72_aa
MQYCLKIKGEHPGLSIGDVGKKLGEMWNDTAADDKHLYEKKTAKLKEKYEKDIAAYRAKA
KPDAAKKRSCPG

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_9|219_bp
atgcagtattgcctaaaaatcaaaggagaacatcctggcctgtccattggtgatgttgga
aagaaactgggagagatgtggaatgacactgctgcagacgacaagcacctttatgaaaag
aagactgccaagctgaaggaaaaatatgaaaaggatattgctgcatatcgagctaaagca
aagcctgatgcagcaaaaaaaaggagttgtccaggctga

>gi568815596f:218034802_218235881|GENSCAN_predicted_peptide_10|107_aa
MAPRGRASRRRAEVAAAMILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLY
HISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLVNPESX

>gi568815596f:218034802_218235881|GENSCAN_predicted_CDS_10|321_bp
atggcgccgcggggccgcgcgtccaggcggcgagcggaagtggccgccgccatgatcctg
ctggaggtgaacaaccgcatcatcgaggagacgctcgcgctcaagttcgagaacgcggcc
gccggaaacaaaccggaagcagtagaagtaacatttgcagatttcgatggggtcctctat
catatttcaaatcctaatggagacaaaacaaaagtgatggtcagtatttctttgaaattc
tacaaggaacttcaggcacatggtgctgatgagttattaaagagggtgtacgggagtttc
ttggtaaatccagaatcagnn