GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:36:59

Sequence gi568815584r:93083190_93284242 : 201053 bp : 46.36% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 Intr -   3331   3169  163  1  1   72  110    58 0.664   5.95
 1.07 Intr -   4782   4642  141  0  0   68   53    75 0.586   2.55
 1.06 Intr -   9506   9433   74  0  2   60   80   122 0.350   7.73
 1.05 Intr -  19283  19191   93  0  0   48   93    69 0.003   3.34
 1.04 Intr -  26707  26612   96  2  0   71   26   109 0.013   2.98
 1.03 Intr -  29816  29739   78  0  0   70   58    72 0.060   1.92
 1.02 Intr -  31330  31245   86  0  2   38   34    97 0.361  -1.24
 1.01 Init -  31974  31880   95  0  2   73  110   167 0.300  17.25
 1.00 Prom -  43822  43783   40                              -4.86

 2.00 Prom +  47046  47085   40                              -3.96
 2.01 Init +  54041  54043    3  1  0   98   52     0 0.452  -2.60
 2.02 Term +  54897  54986   90  2  0   46   42   238 0.907  12.72
 2.03 PlyA +  55445  55450    6                               1.05

 3.00 Prom +  55947  55986   40                              -1.86
 3.01 Init +  57860  57898   39  1  0   76   79    25 0.115   0.59
 3.02 Intr +  64536  64675  140  2  2   76  119    50 0.647   6.16
 3.03 Intr +  86292  86415  124  0  1   36  101   103 0.617   6.99
 3.04 Intr +  90970  91020   51  0  0   92   92    22 0.167   2.10
 3.05 Term +  97184  97243   60  1  0   91   39    96 0.236   2.80
 3.06 PlyA +  98378  98383    6                              -1.75

 4.05 PlyA -  98959  98954    6                               1.05
 4.04 Term - 101079  99998 1082  1  2   27   47   458 0.431  27.88
 4.03 Intr - 101580 101370  211  0  1   32  113   136 0.462   8.99
 4.02 Intr - 101977 101621  357  1  0   74   94   108 0.354   5.45
 4.01 Init - 116207 116169   39  2  0   58  116    13 0.116   1.29
 4.00 Prom - 120260 120221   40                              -2.86

 5.03 PlyA - 120301 120296    6                               1.05
 5.02 Term - 120635 120499  137  0  2   47   42   145 0.774   3.98
 5.01 Init - 123848 123641  208  2  1  113  101   246 0.997  27.38
 5.00 Prom - 123994 123955   40                             -16.65

 6.00 Prom + 124044 124083   40                             -16.89
 6.01 Init + 124103 124252  150  1  0   66   80   281 0.999  23.14
 6.02 Intr + 128843 128966  124  1  1   53   49    98 0.654   2.56
 6.03 Intr + 135338 135546  209  0  2   49   95   198 0.805  15.40
 6.04 Intr + 136023 136172  150  2  0   42   58   113 0.788   4.06
 6.05 Intr + 137060 137222  163  1  1   91   44    86 0.608   4.05
 6.06 Term + 139124 139194   71  0  2   53   44    57 0.547  -4.10
 6.07 PlyA + 139554 139559    6                              -0.45

 7.02 PlyA - 140335 140330    6                              -0.45
 7.01 Sngl - 140863 140375  489  1  0   32   37   498 0.782  35.16
 7.00 Prom - 145889 145850   40                              -5.56

 8.00 Prom + 146919 146958   40                              -2.36
 8.01 Init + 147378 147386    9  2  0   77  110     3 0.587   1.84
 8.02 Intr + 149180 149416  237  1  0  102   93    86 0.726   8.31
 8.03 Term + 151518 151640  123  2  0   86   48    36 0.239  -2.22
 8.04 PlyA + 153791 153796    6                               1.05

 9.09 PlyA - 154380 154375    6                               1.05
 9.08 Term - 159899 159084  816  2  0  120   54   185 0.879  11.44
 9.07 Intr - 163097 162636  462  2  0  101  103    89 0.772   5.05
 9.06 Intr - 165465 165287  179  1  2   91   91   228 0.950  23.04
 9.05 Intr - 168463 168274  190  1  1   18  110   204 0.824  14.76
 9.04 Intr - 170601 170458  144  0  0   26   90   120 0.660   6.48
 9.03 Intr - 174166 174006  161  2  2   52   92    53 0.586   1.81
 9.02 Intr - 178488 178413   76  0  1   69   99    20 0.601   0.29
 9.01 Intr - 180804 180596  209  1  2   72   89   149 0.931  12.20

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  24574  24733  160  0  1   73   80   114 0.803   9.12
S.002 Term +  26575  26711  137  2  2   38   42   125 0.826   1.08


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_1|276_aa
MQTFLKGKRVGYWLSEKKIKKLNFQAFAELCRASQQPCKLARVVILGHLSENGDRSAEER
GQCPLVATFLYWLQNAATVEPVTREPRTFGLCRFSVLGFGSLQVTLKATMAELIILQGYF
KVLTFVMGSLKRKGIMALPLEAFAASLQEAVPNGIPGLHLLDASTTLVFQECLQPRLPGL
EPLVSSTQFPHIPSLGFFPAIPIRDPCGHAGLYPVPLGNLRASPVRDREAQQMFDQNQTR
KLSLPVVGGAAAGQRQLNFKGLGSRDQELPPALRPX

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_1|828_bp
atgcagacctttctgaaagggaagagagttggctactggctgagcgagaagaaaatcaag
aagctgaatttccaggccttcgccgagctgtgcagagcctcgcagcagccctgcaaattg
gccagggtggtgattctgggccacctgtctgagaacggggaccgatcggcagaggagcgg
gggcagtgccccctggtggccacatttctatactggctgcaaaatgctgcaactgttgag
ccagtgaccagggagccccggacctttggcctttgtagatttagtgttcttggttttggc
agtttgcaagtcaccctgaaggccacgatggctgaactgatcatcttgcagggatatttt
aaagtcctaacattcgtcatgggatccttgaaaagaaaaggaattatggccttgccacta
gaggcctttgccgcctccctgcaggaagctgtgcccaacggcatccctggcctccaccta
ctggatgccagtactactctcgtcttccaagaatgtctgcagccaaggcttccaggcctg
gagcctttggtctccagcacccagttcccccacatcccttccctgggcttctttcccgcc
attcccatcagggacccctgcggccatgctgggctgtacccagtgccccttgggaatctg
cgggccagcccagtgcgtgacagagaagcccagcaaatgtttgaccaaaatcagaccagg
aaactctcgctgcctgtggttggaggtgcagcagcagggcaaagacaactaaactttaag
ggcttgggatccagggaccaggagctgcccccagccctcaggccagnn

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_2|30_aa
MPTETAEQLDEAVKYYTLEEIQKHNDSKST

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_2|93_bp
atgccaaccgagacggccgagcagctggacgaggccgtgaagtactacaccctagaggag
attcagaagcacaacgacagcaagagcacctga

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_3|137_aa
MSMSGKGFWKKGTSTEQRIAIANTIQVFMSLLRKKKPDQSLASFSPNFKLPKKEPIGASW
SEAADLSVSVTALKAARLELLIPPGGLVGSLASGVKLRTFAGKSALCHEAAPVDRPTWPA
QCEDDNQDEGLYDDPLL

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_3|414_bp
atgagcatgtctgggaaaggcttctggaaaaagggaacatccacagaacaaagaattgct
attgctaacactatccaggttttcatgtccctcctgagaaaaaagaagccagaccaaagc
ttggcctcttttagtcccaacttcaaactccctaagaaggagcccattggtgcctcctgg
agtgaagctgcagacctttcggtgagtgtgacagctcttaaggcagcacgtctagagtta
ctcattcctcctggtgggctcgtgggctcgctggcttcaggagtgaagctgcggactttc
gcggggaaatcagccctgtgtcatgaggcagccccggtggacaggcccacgtggcctgct
caatgtgaagatgacaaccaggatgaaggcctttatgatgatccacttctttaa

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_4|562_aa
MNIARCNFKLIWKRRHAATKAAQAAPGPGLAALQRREPSARQRSPAEPACKAEVPDLTFL
SRGGQPARRPGCRRSRSFRLGPEARAPRPRGPPLMTSDRPRPPRSFPERDQNRWNPGWSR
SSGGAGGGTSLQPCPLVPARDCHRPITSRCRQYHRHLEYRHRSLWPPSVRQSLGEPALPR
LVGARPGTLAAGARTRARALDHELKSIISGTMTLRLLEDWCRGMDMNPRKALLIAGISQS
CSVAEIEEALQAGLAPLGEYRLLGRMFRRDENRKVALVGLTAETSHALVPKEIPGKGGIW
RVIFKPPDPDNTFLSRLNEFLAGEGMTVGELSRALGHENGSLDPEQGMIPEMWAPMLAQA
LEALQPALQCLKYKKLRVFSGRESPEPGEEEFGRWMFHTTQMIKAWQVPDVEKRRRLLES
LRGPALDVIRVLKINNPLITVDECLQALEEVFGVTDNPRELQVKYLTTYQKDEEKLSAYV
LRLEPLLQKLVQRGAIERDAVNQARLDQVIAGAVHKTIRRELNLPEDGPAPGFLQLLVLI
KDYEAAEEEEALLQAILEGNFT

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_4|1689_bp
atgaacatagctcgctgcaacttcaaactcatttggaagcgccggcacgccgcgaccaag
gctgcgcaggcggcgccaggcccgggcctcgccgccttgcagcgccgcgagcccagcgcc
cgtcagcggtcgccggcggagcctgcttgcaaagctgaggtcccggatctcaccttcctg
tcccgtggtggccagcccgcccgccgtcccggatgccgccgcagtcggagcttccggctc
gggccggaagcgcgcgcgccccgcccccgaggcccgcccctcatgacgtcagatcgcccc
cgcccgccgcgcagcttccccgagcgagaccaaaacaggtggaatccgggctggagccgg
agctccggcggcgcgggtggcggcacgtccctccagccttgccccctggtgcccgctcgc
gactgtcatcgccccatcacttctcgttgcagacagtaccacaggcacctggagtaccgg
catcggtcgctgtggcccccgagtgtccgtcagagcctaggggagcctgccctcccgcgc
ctcgtcggggcccggccaggcaccttggccgccggcgcacggacgcgggcacgagcacta
gatcacgaacttaagtctattatttcgggcaccatgactttgaggcttttagaagactgg
tgcagggggatggacatgaaccctcggaaagcgctattgattgccggcatctcccagagc
tgcagtgtggcagaaatcgaggaggctctgcaggctggtttagctcccttgggggagtac
agactgcttggaaggatgttcaggagggatgagaacaggaaagtagccttagtagggctt
actgcggagactagtcacgccctggtccctaaggagataccgggaaaagggggtatctgg
agagtgatctttaagccccctgacccagataatacatttttaagcagattaaatgaattt
ttagcgggagagggcatgacagtgggtgagttgagcagagctcttggacatgaaaatggc
tccttagacccagagcagggcatgatcccggaaatgtgggcccctatgttggcacaggca
ttagaggctcttcagcctgccctgcaatgcttgaagtataaaaagctgagagtgttctcg
ggcagggagtctccagaaccaggagaagaagaatttggacgctggatgtttcatactact
cagatgataaaggcgtggcaggtgccagatgtagagaagagaaggcgattgctagagagc
cttcgaggcccagcacttgatgttattcgtgtcctcaagataaacaatcctttaattact
gtcgatgaatgtctgcaggctcttgaggaggtatttggggttacagataatcctagggag
ttgcaggtcaaatatctaaccacttaccagaaggatgaggaaaagttgtcggcttatgta
ctaaggctggagcctttgttacagaagctggtacagagaggagcaattgagagagatgct
gtgaatcaggcccgcctagaccaagtcattgctggggcagtccacaaaacaattcgcaga
gagcttaatctgccagaggatggcccagcccctggtttcttgcagttattggtactaata
aaggattatgaggcagctgaggaggaggaggcccttctccaggcaatattggaaggtaat
ttcacctga

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_5|114_aa
MELLGEYVGQEGKPQKLRVSCEAPGDGDPFQGLLSGVAQMKDMVTELFDPLVQGEVQHRV
AAAPDEDLDAIERIVIQQIFILKGDDEDDAEDENNIDNRTNFDGPSAKRPKTPS

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_5|345_bp
atggagctgctgggagagtacgtcgggcaggaagggaagccgcagaagctgcgggtgtcc
tgtgaggcgccgggtgacggcgaccctttccagggcctgttgtctggcgtggcccagatg
aaggacatggtaacggaattattcgaccctctggtacagggggaagtgcagcaccgggtg
gcggcggctccagacgaggacttggacgccatagaacgtattgtcatacaacaaatattt
attttaaaaggtgatgatgaagatgatgcagaagatgaaaataacattgataacagaact
aacttcgatggaccatctgcaaaacggccaaaaacaccgtcttaa

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_6|288_aa
MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQDKAKVNSGNK
YNDNFFGLYCICKRPYPDPEDEVRELEVKPGVTKISTEDDGLVRNIDGIGDQEVIKPENG
EHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQ
ELKAKQLIKKDTATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQ
ATDRSDPLMDTLSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVC

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_6|867_bp
atggccggagccgagggcgccgctgggcggcagtcggagctggagcccgtggtatcgttg
gtcgacgtccttgaggaggacgaggagctggagaatgaggcgtgcgctgtcctgggcggc
agcgactccgagaagtgctcctactctcaggacaaagcaaaggtaaattctggcaataag
tacaatgacaacttttttggattgtactgcatttgcaagagaccttatcctgatcctgaa
gacgaggtaagagaattggaagttaaacctggggtaaccaaaatatccactgaggatgat
ggattggtgcggaacattgatggaataggtgatcaggaagttatcaaacctgaaaatgga
gagcatcaagatagtaccctcaaagaggatgttccagaacagggaaaggatgatgtccgg
gaggttaaagtagagcagaacagtgaaccatgtgccggctctagttctgaatctgatctc
cagacagtgtttaagaatgaaagcctcaacgcagaatcaaaatctggctgcaaacttcag
gagcttaaagctaagcagcttataaagaaagacactgccacctattggcccctgaactgg
cgtagcaagttgtgtacctgccaagactgtatgaaaatgtatggagatctagatgtctta
ttcctgacagatgaatacgacacagttctggcttatgaaaacaaagggaagattgcccag
gccactgacaggagcgatcccctaatggatacccttagcagcatgaatagagtccagcaa
gtggaactcatttgtgaatacaatgatttgaagactgaacttaaagactatctcaagaga
tttgctgatgaaggcacggtatgttga

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_7|162_aa
MRIFAPNHVVAKSRDFWYFVSQLKKMKKSSGEIVYCGQVFEKSPPRVKNFGIWLSYDSRS
GAPNMYREYRDLTTAGAVTQCYREVYGRLAPHLGPFHRDPEGEGDRSQQVPPAGRPSSSS
TTPRSSFPLPHRVLPVSPSHASPPRGPTRSSRGRALARVCPK

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_7|489_bp
atgcgaatctttgcgcctaatcacgttgtcgccaagtcccgggacttctggtacttcgta
tctcagttaaaaaagatgaagaagtcttcaggggagattgtctactgtgggcaggtgttt
gagaagtccccaccgcgggtcaagaacttcggcatctggctgagctatgactcccggagc
ggcgcccccaacatgtaccgggaataccgggacctgaccaccgcgggcgctgttacccag
tgctaccgagaggtctatgggcgcctggcaccgcacctgggcccattccatcgagatcct
gaaggtgaaggagatcgcagccagcaagtgccgccagccggccggccatcaagcagttcc
acgactccaagatcaagtttcccgctgccccaccgggtcctgcccgtcagcccaagccac
gcttcaccaccaagaggcccaacacgttcttctaggggcagggccctcgcccgggtgtgc
cccaaataa

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_8|122_aa
MAQAGFPGSASSPSLKTPRQASSGHRNTPQSLETRHDSPESKALLDEAQSSGELSEGHSL
VPGRGKGTGLALGGNGRGCTELAALGQQLPPAGLERLESPKFIIQALFHLPLNLSPNHTI
YS

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_8|369_bp
atggctcaggcaggctttcctggctccgcctcctcaccctctctgaagaccccccgacag
gccagcagcgggcacaggaacactccccaaagcttggagacaaggcatgacagcccagaa
tccaaggctctgctagatgaggctcaaagcagcggcgagctctccgagggacacagctta
gtcccaggccgggggaaaggcaccgggctggcactgggaggaaatggacgtggttgtacg
gaactggctgcccttggccagcaactccctccagctggcttggaaaggttggagtccccc
aagttcatcatccaggccctctttcatcttcctttaaacctttcccctaatcacaccatc
tactcctaa

>gi568815584r:93083190_93284242|GENSCAN_predicted_peptide_9|745_aa
XCEDIIAESISLDTLIAILKWSSHPYGSKWVHRQALHFLCEEFSQVMTSDVFYELSKDHL
LTAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDME
ELREILSSLLPFVRIEHILPINSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKNA
GIYVRPRLFSPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVNNAVPQCCHMIS
HQQISSNQSSPPSVVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYE
IQIRVLREFGLADAAAELLQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPPAETMFTD
LDSFVAFHPPLPPPPPPYHPPATPIHNQLKAGWKQRPPSQHPSRSFSYPCNHSLFHSRTA
PKAGPPPVYLPSVKAAPPDCTSTAGLGRQTVAAAAATTTSTATAAAAAASEKQVRTQPVL
NDLMPDIAVGVSTLSLKDRRLPELAVDTELSQSVSEAGPGPPQHLSCIPQRHTHTSRKKH
TLEQKTDTRENPQEYPDFYDFSNAACRPSTPALSRRTPSPSQGGYFGPDLYSHNKASPSG
LKSAYLPGQTSPKKQEEARREYPLSPDGHLHRQKNEPIHLDVVEQPPQRSDFPLAAPENA
STGPAHVRGRTAVETDLTFGLTPNRPSLSACSSEAPEERSGRRLADSESLGHGAQRNTDL
EREDSISRGRRSPSKPDFLYKKSAL

>gi568815584r:93083190_93284242|GENSCAN_predicted_CDS_9|2238_bp
ngctgtgaggatatcattgctgagagcatctcattagataccttaattgccatcctcaag
tggagttctcatccatatggctctaaatgggtgcaccgacaagctttacatttcctctgt
gaggaattttcccaggtcatgacttcggatgttttttatgaactcagcaaagaccatctg
cttactgctatccagtctgactacctacaggcaagtgaacaagatatccttaaatatctg
attaaatggggagagcatcagttgatgaaaagaatagcagatagagagccaaacttactg
agtggcactgcccatagtgtgaacaaaagaggtgtaaaaagacgggacctggacatggaa
gagctcagagagatcctttcttctctcttaccttttgtgcgaattgaacacatcttacct
ataaacagtgaagtcttaagtgatgcaatgaaaagaggcttgattagtactcctccatca
gatatgcttcctacaacagaaggtgggaagtcaaatgcctggttacggcaaaaaaatgct
ggcatctatgttcgtcctcgactcttctctccctatgtggaagaagcaaagtcagtgcta
gatgagatgatggtggaacaaacggatcttgtgcgcttgcgaatggttagaatgtccaat
gtgccagacacgctctacatggtcaataatgccgtgccacagtgttgtcacatgatcagc
caccagcagatcagcagcaaccagtcaagccctccttcagttgtagccaacgaaattcca
gttcctcgtctcctcattatgaaagacatggtcagacgactgcaggaactgcggcacacg
gagcaggtgcagagggcctatgccctgaactgcggggaaggcgccactgtcagctatgaa
attcagattcgagtgctaagagagtttggtcttgcagatgctgctgcagagctgttgcag
aatcctcacaaattctttcctgatgaacgttttggggatgaaagtccactcttgacaatg
agacagcctgggagatgtcgcgtaaacagtacacctcctgcagaaaccatgtttacagat
ctggactcttttgtggccttccatccacccttgccccctccaccacctccctaccacccc
ccagctaccccaatccataaccaactcaaagcaggctggaagcaaagacctcccagtcag
cacccttcacgttcattttcttatccctgtaatcattcgctgttccactccagaacagct
cctaaagctggccctcccccagtctacttgccgagtgtgaaagctgcaccgcctgattgt
accagcactgcaggactgggcagacagacggtggctgctgctgccgccaccaccacctca
acagcaacagcagcagcagcagcagcatctgagaagcaagtgcgaacacaacctgtgctg
aatgatctgatgccagacatcgcggtgggtgtgtccacactgtcactcaaggacaggagg
cttccagagcttgctgtagacacagaattaagccagtcagtttctgaagcaggaccaggg
cctccccagcatctgtcgtgtattccacagagacatacacacacttctcggaaaaaacac
acactagagcaaaaaacagacaccagagaaaatccacaggaatatccggatttctatgac
ttctcaaatgctgcttgcagaccttctactcctgctctcagcagacgcaccccttcccct
tcgcaaggtggatattttggtcccgatctgtacagccacaataaggcatcaccaagtggc
ttaaagtcagcctacctacctggtcagacgtctcctaaaaaacaggaagaagctaggaga
gaatatccactttcccctgacgggcatctacacagacaaaagaatgagccgatacacctg
gatgtcgttgagcaacctccccagcggtcagactttcctttggcagccccagaaaatgct
agtaccggtccagcccatgtcaggggacgaactgcagtagaaactgacttgacttttggg
ctgactcctaacagaccttcactttctgcatgtagctctgaagctcccgaagagagatcc
ggtagaagactggcagacagtgagtccctgggccatggagctcagagaaatacagatttg
gaaagggaagattcaataagcagaggaaggaggtcaccaagcaagccggacttcctctac
aaaaagtctgccctctga