GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:33:46

Sequence gi568815597r:28049996_28251021 : 201026 bp : 44.34% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -  20244  20192   53  2  2   85   75    37 0.010   0.65
 1.02 Intr -  38720  38529  192  1  0   40   92   180 0.388  12.21
 1.01 Init -  46427  45751  677  2  2  101    2   498 0.210  37.14
 1.00 Prom -  54710  54671   40                              -4.96

 2.03 PlyA -  56097  56092    6                               1.05
 2.02 Term -  63128  63013  116  0  2   80   29   136 0.811   5.63
 2.01 Init -  71326  71200  127  1  1   94   49   219 0.286  19.04
 2.00 Prom -  76744  76705   40                              -2.26

 3.02 PlyA -  77356  77351    6                               1.05
 3.01 Sngl - 101026  99998 1029  1  0   85   37  1671 0.802 158.80
 3.00 Prom - 106338 106299   40                              -4.96

 4.15 PlyA - 106561 106556    6                               1.05
 4.14 Term - 114469 114299  171  1  0   69   33   110 0.245   1.43
 4.13 Intr - 124128 124102   27  0  0   96   70    41 0.286   1.41
 4.12 Intr - 125606 125473  134  0  2  103   54    23 0.169   0.76
 4.11 Intr - 126873 126771  103  0  1  110   25    72 0.256   2.85
 4.10 Intr - 147739 147654   86  2  2   71   80    86 0.489   5.64
 4.09 Intr - 151375 151261  115  1  1   98   92   171 0.987  18.52
 4.08 Intr - 153827 153752   76  1  1   92   84    82 0.998   7.72
 4.07 Intr - 155354 155263   92  2  2   66   83    50 0.989   1.09
 4.06 Intr - 158418 158347   72  0  0   60  105    57 0.945   4.20
 4.05 Intr - 160071 159977   95  1  2    5   93   137 0.971   5.58
 4.04 Intr - 160642 160576   67  1  1   90   63    52 0.950   1.38
 4.03 Intr - 165001 164945   57  1  0   63   92    44 0.452   1.38
 4.02 Intr - 179028 178927  102  0  0   71   83    20 0.127   0.17
 4.01 Init - 183003 182926   78  0  0   92   51    66 0.268   4.37
 4.00 Prom - 183451 183412   40                              -5.76

 5.00 Prom + 183907 183946   40                             -10.05
 5.01 Init + 186189 186275   87  2  0   87  101   163 0.914  16.29
 5.02 Intr + 186366 186457   92  2  2   93   93   120 0.913  11.79
 5.03 Term + 187842 187983  142  0  1   65   42   183 0.999   8.80
 5.04 PlyA + 188086 188091    6                               1.05

 6.03 PlyA - 189536 189531    6                               1.05
 6.02 Term - 192018 191793  226  2  1   35   43   168 0.687   3.25
 6.01 Intr - 196672 196581   92  1  2   25   91   108 0.756   3.59

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_1|308_aa
MAAAAVQGERSGGSGGCSGAGGASNCGTGSGRSGLLDKWKIDDKPVKIDKWDGSAVKNSL
DDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVIS
YFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKGFDDKYTLKLTFISGR
TKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIKLNTCAQRFLVERGV
DCEVTLAAYFRFLAMRIRVTLTPRFPPLDWFYCGSGLISMSCCGAFTAFGLSVSFSGQEM
VNKPKQRX

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_1|924_bp
atggcggcggcagctgtacagggcgagagaagcggtggtagcggaggctgtagtggggct
ggtggtgcttccaactgcgggacagggagtggccgtagcggcttgttggataagtggaag
atagatgataagcctgtaaaaattgacaagtgggatggatcagctgtgaaaaactctttg
gatgattctgccaaaaaggtacttctggaaaaatacaaatatgtggagaattttggtcta
attgatggtcgcctcaccatctgtacaatctcctgtttctttgccatagtggctttgatt
tgggattatatgcacccctttccagagtccaaacccgttttggctttgtgtgtcatatcc
tattttgtgatgatggggattctgaccatttatacctcatataaggagaagagcatcttt
ctcgtggcccacaggaaagatcctacaggaatggatcctgatgatatttggcagctgtcc
tccagtcttaaagggtttgatgacaaatacaccttgaagctgaccttcatcagtgggaga
acaaagcagcagcgggaagccgagttcacaaagtccattgctaagttttttgaccacagt
gggacactggtcatggatgcatatgagcctgaaatatccaggctccatgacagtcttgcc
atagaaagaaaaataaaactcaacacatgcgcccagaggtttctagtggaacgaggtgtg
gattgtgaggtgactctggccgcttacttccggttcctagcgatgcgcatccgggtcacg
ctaacgccgcggtttcctccgctcgattggttctactgtgggtctggactgatctccatg
tcctgttgtggggcttttacagcctttggtttgtctgtttcattcagtggtcaggagatg
gtcaacaagcccaaacagagagnn

>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_2|80_aa
MLALISRLLDWFRSLFWKEEMELMLVGLQYSGKTTFVNVIASVLYSGTSALRGEAAAEDL
APDGESCAFSLPNYHFEDIV

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_2|243_bp
atgctggcactcatctcccgcctgctggactggttccgttcgctcttctggaaggaggag
atggagctgatgctcgtggggctgcagtactcgggcaagaccacctttgtcaatgtcatc
gcgtcagttctctattctggaacttctgccctgagaggagaagctgctgctgaagatctt
gctccagatggagagagttgtgcatttagcttgcccaactaccattttgaggacatcgtc
tag

>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_3|342_aa
MEPHDSSHMDSEFRYTLFPIVYSIIFVLGVIANGYVLWVFARLYPCKKFNEIKIFMVNLT
MADMLFLITLPLWIVYYQNQGNWILPKFLCNVAGCLFFINTYCSVAFLGVITYNRFQAVT
RPIKTAQANTRKRGISLSLVIWVAIVGAASYFLILDSTNTVPDSAGSGNVTRCFEHYEKG
SVPVLIIHIFIVFSFFLVFLIILFCNLVIIRTLLMQPVQQQRNAEVKRRALWMVCTVLAV
FIICFVPHHVVQLPWTLAELGFQDSKFHQAINDAHQVTLCLLSTNCVLDPVIYCFLTKKF
RKHLTEKFYSMRSSRKCSRATTDTVTEVVVPFNQIPGNSLKN

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_3|1029_bp
atggagccacatgactcctcccacatggactctgagttccgatacactctcttcccgatt
gtttacagcatcatctttgtgctcggggtcattgctaatggctacgtgctgtgggtcttt
gcccgcctgtacccttgcaagaaattcaatgagataaagatcttcatggtgaacctcacc
atggcggacatgctcttcttgatcaccctgccactttggattgtctactaccaaaaccag
ggcaactggatactccccaaattcctgtgcaacgtggctggctgccttttcttcatcaac
acctactgctctgtggccttcctgggcgtcatcacttataaccgcttccaggcagtaact
cggcccatcaagactgctcaggccaacacccgcaagcgtggcatctctttgtccttggtc
atctgggtggccattgtgggagctgcatcctacttcctcatcctggactccaccaacaca
gtgcccgacagtgctggctcaggcaacgtcactcgctgctttgagcattacgagaagggc
agcgtgccagtcctcatcatccacatcttcatcgtgttcagcttcttcctggtcttcctc
atcatcctcttctgcaacctggtcatcatccgtaccttgctcatgcagccggtgcagcag
cagcgcaacgctgaagtcaagcgccgggcgctgtggatggtgtgcacggtcttggcggtg
ttcatcatctgcttcgtgccccaccacgtggtgcagctgccctggacccttgctgagctg
ggcttccaggacagcaaattccaccaggccattaatgatgcacatcaggtcaccctctgc
ctccttagcaccaactgtgtcttagaccctgttatctactgtttcctcaccaagaagttc
cgcaagcacctcaccgaaaagttctacagcatgcgcagtagccggaaatgctcccgggcc
accacggatacggtcactgaagtggttgtgccattcaaccagatccctggcaattccctc
aaaaattag

>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_4|424_aa
MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFE
VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRAL
DVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKER
EAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRT
FLRPPKVKMEQLEQIGSPAVEPTAGKRTFVGRGEVEGASQLLASGAVYTPPHPSLFEKPL
CSAQVLAAQLGSSCGGPDMGLCTHSLVKYDRTSRLSPHTSGCSPLALTEYPAVFQVFGVH
DESGEKPLSKEYLDPRECAHLECGVPPPSPLLVLALLVNAPSGLRGCKELLVQELWMNLD
VSYL

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_4|1275_bp
atggcggcttcaggagagagcgggacttcaggcggcggaggcagcaccgaggaagcattt
atgaccttctacagtgaggtgaaacaaatagagaagagagactcggttctaacttcgaaa
aatcagattgaaagactgacccgtcctggttcctcttacttcaatttgaacccatttgag
gttcttcagatagatcctgaagttacagatgaagaaataaaaaagaggtttcggcagtta
tccatcttggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaaggctttt
gaagctgtggacaaagcttacaagttgctactggatcaggagcaaaagaagagggccctg
gatgtaattcaggcaggaaaagaatacgtggaacacactgtgaaagagcgaaaaaaacaa
ttaaagaaggaaggaaaacctacaattgtagaggaggatgatcctgagctgttcaaacaa
gctgtatataaacagacaatgaaactctttgcagagctggaaattaaaaggaaagagaga
gaagccaaagagatgcatgaaaggaaacgacaaagggaagaagagattgaagctcaagaa
aaagccaaacgggaaagagagtggcagaaaaactttgaggaaagtcgagatggtcgtgtg
gacagctggcgaaacttccaagccaatacgaaggggaagaaagagaagaaaaatcggacc
ttcctgagaccaccgaaagtaaaaatggagcaactggagcagataggctccccagctgtg
gagccaactgctggcaagaggacctttgtgggcagaggtgaggtggaaggagccagccag
ctcctggcctcgggcgctgtctacaccccaccccatccctcgctctttgagaagcctctg
tgcagtgcccaggtcctggcggcccagcttggaagttcctgtggaggtccagacatgggg
ctgtgcactcactcacttgtgaaatatgacagaaccagcaggctctctccccacacctct
ggctgctctcctttagctctgactgaatacccagctgtgttccaggtgtttggggtgcat
gatgagagcggggagaagcctctgagcaaggagtacttggatccaagagagtgtgcccac
ttggaatgtggtgttcccccgccttcaccacttctagtccttgccctgttggtgaatgca
ccctcaggcctgcggggctgcaaggaactgctggtgcaggagctgtggatgaacttggat
gtatcttatttatag

>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_5|106_aa
MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_5|321_bp
atggcagtgacggcgttggcggcgcggacgtggcttggcgtgtggggcgtgaggaccatg
caagcccgaggcttcggctcggatcagtccgagaatgtcgaccggggcgcgggctccatc
cgggaagccggtggggccttcggaaagagagagcaggctgaagaggaacgatatttccga
gcacagagtagagaacaactggcagctttgaaaaaacaccatgaagaagaaatcgttcat
cataagaaggagattgagcgtctgcagaaagaaattgagcgccataagcagaagatcaaa
atgctaaaacatgatgattaa

>gi568815597r:28049996_28251021|GENSCAN_predicted_peptide_6|105_aa
ETDERNKRICSHNGFYSKETEGSSKCSEMESQKANANTNRWHFYIYFQEPLPLPPIPRYP
CTSHSPRLRRELANRQLKHWIGTATQGCGSKSSEVKTLISTNLIM

>gi568815597r:28049996_28251021|GENSCAN_predicted_CDS_6|318_bp
gagactgatgagagaaataaacggatttgttcacacaacggcttctacagcaaagaaaca
gaaggtagctccaagtgctctgaaatggaaagccaaaaagctaatgccaacaccaaccgc
tggcacttctatatttacttccaggagcccttgcctttaccacccataccccgctaccca
tgtacctcccactcccccagattgaggagggagctagctaataggcaactgaagcactgg
attggaactgcaactcaaggttgtgggagcaagagttctgaagtgaagaccttgatcagc
acaaacctgatcatgtga