Result of FASTA (omim) for pF1KB9827
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9827, 325 aa
  1>>>pF1KB9827 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9531+/-0.000484; mu= -5.8847+/- 0.030
 mean_var=276.3910+/-55.401, 0's: 0 Z-trim(117.6): 14  B-trim: 31 in 1/56
 Lambda= 0.077146
 statistics sampled from 29727 (29741) to 29727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.349), width:  16
 Scan time:  7.560

The best scores are:                                      opt bits E(85289)
XP_016866218 (OMIM: 614686) PREDICTED: protein FAM ( 325) 2142 251.7 1.5e-66
NP_036267 (OMIM: 614686) protein FAM50B [Homo sapi ( 325) 2142 251.7 1.5e-66
NP_004690 (OMIM: 300453) protein FAM50A [Homo sapi ( 339) 1158 142.2 1.5e-33


>>XP_016866218 (OMIM: 614686) PREDICTED: protein FAM50B   (325 aa)
 initn: 2142 init1: 2142 opt: 2142  Z-score: 1315.5  bits: 251.7 E(85289): 1.5e-66
Smith-Waterman score: 2142; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
              250       260       270       280       290       300

              310       320     
pF1KB9 NKHIFPASRWEAYDPEKKWDKYTIR
       :::::::::::::::::::::::::
XP_016 NKHIFPASRWEAYDPEKKWDKYTIR
              310       320     

>>NP_036267 (OMIM: 614686) protein FAM50B [Homo sapiens]  (325 aa)
 initn: 2142 init1: 2142 opt: 2142  Z-score: 1315.5  bits: 251.7 E(85289): 1.5e-66
Smith-Waterman score: 2142; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
              250       260       270       280       290       300

              310       320     
pF1KB9 NKHIFPASRWEAYDPEKKWDKYTIR
       :::::::::::::::::::::::::
NP_036 NKHIFPASRWEAYDPEKKWDKYTIR
              310       320     

>>NP_004690 (OMIM: 300453) protein FAM50A [Homo sapiens]  (339 aa)
 initn: 1726 init1: 1142 opt: 1158  Z-score: 723.4  bits: 142.2 E(85289): 1.5e-33
Smith-Waterman score: 1700; 74.3% identity (90.3% similar) in 339 aa overlap (1-325:1-339)

               10        20        30        40        50        60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
       ::::::.  ::::::::.::::.:::::: .:::::::.:.::..::.::::::::::::
NP_004 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
       :::::::::::::::.:::::.:::.::::... .: ... :. ::.:...: ::::: :
NP_004 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
               70        80        90       100       110       120

              130                     140       150       160      
pF1KB9 SFALDDLDDQADAAE--------------ARRAGNLGKNPDVDTSFLPDRDREEEENRLR
       ::.:.. .. ..  :              . .  .:::::::::::::::::::::::::
NP_004 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB9 EELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLE
       :::::::::..::.:.::.:.::::::::::::::..:::::.::::.:::. ::::: :
NP_004 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KB9 LRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDE
       ::::::::::.::::::.::.:.:::::...:::::::::.::::::::::::::.::::
NP_004 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
              250       260       270       280       290       300

        290       300       310       320     
pF1KB9 SHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTIR
       ::::::::::::::::::::::::: :::::::::::::
NP_004 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
              310       320       330         




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:31:01 2016 done: Fri Nov  4 19:31:02 2016
 Total Scan time:  7.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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