GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:31:26

Sequence gi568815592f:3749812_3950786 : 200975 bp : 45.21% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   1720   1465  256  1  1   97   86   556 0.974  53.69
 1.00 Prom -   3995   3956   40                              -5.16

 2.04 PlyA -   5346   5341    6                               1.05
 2.03 Term -   8725   8268  458  2  2   69   49   140 0.662   3.49
 2.02 Intr -   9397   9270  128  0  2   16  113    63 0.243   1.92
 2.01 Init -  11813  11728   86  2  2   83   48    77 0.174   2.18
 2.00 Prom -  12954  12915   40                              -4.46

 3.00 Prom +  23780  23819   40                              -5.16
 3.01 Init +  25862  25914   53  1  2   75   60    52 0.033   0.46
 3.02 Intr +  30991  31108  118  1  1    8   62   101 0.040  -0.03
 3.03 Intr +  33838  33918   81  0  0   66   58    57 0.109   0.33
 3.04 Intr +  34690  34765   76  0  1   78   96    56 0.198   4.49
 3.05 Intr +  38693  38869  177  0  0  122   50    23 0.488   1.79
 3.06 Intr +  44208  44331  124  1  1   77   82    33 0.069   1.24
 3.07 Intr +  50005  50293  289  1  1   74   94   117 0.200   8.15
 3.08 Intr +  59125  59249  125  0  2   34   51   105 0.035   0.78
 3.09 Intr +  70895  71078  184  2  1   84   94    56 0.049   5.59
 3.10 Intr +  71277  71324   48  2  0   68   66    69 0.086   1.58
 3.11 Intr +  73560  73644   85  2  1   25   48    55 0.004  -5.41
 3.12 Intr +  79631  79734  104  0  2  101   81    56 0.624   6.09
 3.13 Term +  88106  88246  141  1  0   67   43   127 0.745   4.03
 3.14 PlyA +  88558  88563    6                               1.05

 4.00 Prom +  97779  97818   40                              -5.36
 4.01 Sngl + 100001 100978  978  1  0  102   41  2394 0.964 232.89
 4.02 PlyA + 101083 101088    6                               1.05

 5.03 PlyA - 101528 101523    6                               1.05
 5.02 Term - 103611 103522   90  0  0  123   43   157 0.920  12.42
 5.01 Init - 113728 113684   45  1  0   78   50    42 0.092   0.08
 5.00 Prom - 113852 113813   40                              -3.06

 6.00 Prom + 116014 116053   40                              -2.96
 6.01 Init + 122598 122797  200  2  2   89   64   107 0.061   6.77
 6.02 Intr + 133187 133327  141  2  0   62   57    64 0.046   0.17
 6.03 Intr + 137628 137697   70  0  1   84  103    31 0.111   3.38
 6.04 Term + 143323 143424  102  0  0   67   42   139 0.693   5.48
 6.05 PlyA + 144406 144411    6                               1.05

 7.03 PlyA - 144541 144536    6                               1.05
 7.02 Term - 150414 150173  242  1  2   48   48   169 0.918   5.09
 7.01 Init - 152621 152489  133  2  1   98   95    38 0.498   5.80
 7.00 Prom - 153883 153844   40                              -4.66

 8.00 Prom + 155114 155153   40                              -7.16
 8.01 Init + 156224 156331  108  1  0   71   84   160 0.914  12.12
 8.02 Term + 161490 161780  291  2  0  108   39   121 0.661   4.54
 8.03 PlyA + 163828 163833    6                               1.05

 9.05 PlyA - 164048 164043    6                               1.05
 9.04 Term - 164644 164383  262  0  1   63   42   152 0.239   3.10
 9.03 Intr - 175924 175836   89  1  2   72   76    19 0.014  -2.13
 9.02 Intr - 187565 187355  211  1  1   26   63   123 0.081   2.52
 9.01 Init - 191389 191196  194  1  2   65  110    70 0.497   5.34
 9.00 Prom - 195140 195101   40                              -2.86

10.04 PlyA - 195709 195704    6                               1.05
10.03 Term - 197222 197200   23  0  2  148   47    -8 0.422  -0.43
10.02 Intr - 198924 198782  143  2  2   63   44    91 0.546   2.20
10.01 Init - 199844 199615  230  2  2   65   87   130 0.726   8.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +   1862   1972  111  1  0   26   50   287 0.976  16.91
S.002 Term +   2866   3084  219  0  0  121   33    89 0.918   3.74
S.003 Init + 119661 119712   52  2  1   61  115    26 0.842   4.00
S.004 Term + 119901 120046  146  1  2   57   55   118 0.938   3.47


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_1|86_aa
MASAVFEGTSLVNMFVRGCWVNGIRRLIVSRRGDEEEFFEIRTEWSDRSVLYLHRSLADL
GRLWQRLRDAFPEDRSELAQGPLRQX

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_1|258_bp
atggcctcggcggtgtttgagggcacgtcgctcgtgaacatgttcgtgcgcggctgctgg
gtgaacggcatccgcaggctcatcgtcagccggcgcggcgacgaagaggagttcttcgag
atccgcacggagtggtcggaccgcagcgtgctctacctgcaccgcagcctggcggacctg
ggccgcctgtggcagcgcctgcgcgacgcctttcccgaggaccggtccgaactggcgcag
gggccgctgcggcaagnn

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_2|223_aa
MAGCRSRTLLRREAAKAQREVEHSSCWPRSETTNLGSECVTALEGGASGVVRSSRWVHGV
TGFRSEAADLHGGAACQSRACVPTLVSPWVVDGTGRRRAGRGARRGGWGSAGAHGVGEAQ
AWRAAGPEPCLAGRQLKPGEKLSTAAAGPGAKPLSARPAGPAGRSECGVRRAYARPELAL
ARKRRAQSRFLPAPLPLQPPASRGSRLWSRLAQRRGPHGAAAG

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_2|672_bp
atggcgggctgcaggtcccgaaccctgctccgcagggaggcagctaaggcccagcgagaa
gtcgagcacagcagctgctggcccagaagtgaaactacaaaccttggcagtgagtgtgtt
acagctctagaaggcggtgcatctggagttgttcgttcctcccgatgggttcatggtgtc
accggcttcaggagtgaagctgcagaccttcacggtggagctgcctgccagtcccgcgcc
tgtgtgcccacacttgtcagcccttgggtggtcgatgggactgggcgccgtagagcaggg
cgcggcgctcgtcggggaggctggggcagtgcaggagcccacggcgtgggggaggctcag
gcatggcgggctgcagggcccgagccctgcctcgcggggagacagctaaagcccggcgag
aagttgagcacagcagctgctggcccaggtgctaagcccctcagtgcccggccggcggga
cctgctggccgctccgagtgcggggtccgccgagcctacgcccgcccggaactcgcgctg
gcccgcaagcgccgcgcacagtcccggttcctgcccgcgcctctccctctacaacccccc
gcaagccgagggagccggctctggtctcggctggcccagagaaggggcccccacggtgca
gcggcgggctga

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_3|534_aa
MELESLVEASSIRLELCRDHRNEQRLGRKNDDAGVAYGDVEVSGDTGVKADTVCWMQERL
VLLIQVPPLEGKGTSVSQCGKPWKKKFADLELVSIGASVTSSAAGMGSPAPEWALMHRLG
LLRPHAQALCVTHNSCLSSPLRPTGGVTCSVVLPRKTDPKESLHAGPEMLALTSIYSQAK
DLCQSFWLEKCAKETTWTSGKEQCRMVVFGKILMNKNVAKKAQEREWLFPAGGTGEGFCR
QRREGRAQQQVLCMQRPGRVWRIQGRRPWLMQLDLFGGEKKATAGEKEEKETQFKSQNIC
DELRMQLLTTVLVFAKFSAPELVPVKLVRSADEFSVWAPGGSSCAKLGNSDLIGLGVTRG
GISKCSLADSHVQPGLRAPAVNDESWLFGKDPSHAASSHHICKDCARPLSLQATFVGLSA
KYLAQGLSCIVERVKVVTPSRPESNWVPLTPAEYIWVRVLLLQPTQCMLEPPQESDSEKD
ECEGFCGLVPPLNIATLGTKFPTRELLEDFKTIALSADKNAEELELSYISENDN

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_3|1605_bp
atggaactcgaatctttggtggaagcttcgagcatccggcttgagctttgcagagaccac
aggaatgagcagagactggggagaaaaaatgatgatgccggtgtggcatatggggatgtt
gaagtctctggggacactggggtgaaggccgacacagtttgctggatgcaggagaggctg
gtgctgctgatccaggtgccacccttggagggcaagggcacaagtgtatcacagtgtggc
aaaccatggaagaaaaagtttgctgatttagaacttgttagtataggtgcatctgtcaca
agctcagcggccggcatgggcagcccagctcctgagtgggctctcatgcataggctcggc
ctgcttagaccacatgcccaagctctgtgcgtgactcacaacagctgcctgtcttcaccc
ctcaggcccacgggtggtgtcacctgcagtgtggtgctccccaggaagacagatcctaag
gaatcccttcatgcaggacctgaaatgctggcactcaccagcatttattcacaggccaag
gatttgtgccaatcattttggctggaaaagtgtgccaaagagacaacctggacatcagga
aaagaacaatgcaggatggtggtgtttggaaaaatcctgatgaataagaatgtggccaag
aaagcccaggagagggagtggttatttccagctgggggcactggagagggtttctgcaga
cagaggcgggaagggcgcgcccagcagcaggtactgtgcatgcaaaggccaggcagggta
tggcggattcagggaagaaggccatggctgatgcaattggatctatttgggggagagaag
aaggccacggctggagagaaagaggaaaaagaaacacaattcaaaagccagaatatctgt
gatgaacttcgaatgcagttactcactacagtgcttgtttttgccaagttctcagctccc
gagctggtgcctgtgaagctggtgcggtctgcagatgagttttctgtttgggctcctgga
ggctccagctgtgccaagctagggaattctgacttaattggtctgggtgtgaccaggggt
gggatttctaaatgttcccttgctgattcccacgtgcagccggggctgagggcccctgct
gtgaacgatgagtcctggctctttggaaaggaccccagccatgcagccagctctcaccac
atctgcaaagactgtgccagacccctaagtcttcaggctacctttgtggggttgtccgcc
aagtacctggctcagggactgagttgcattgtggaaagagtaaaggttgtgacgccaagt
aggcctgagtccaactgggtgccccttacaccagctgaatacatctgggttcgtgtctta
ttgctccaacccacacagtgcatgcttgaaccaccccaggaatcagacagtgagaaagat
gagtgtgagggcttctgtgggctggttccacctctcaacattgccacactggggaccaag
tttccaacacgtgaacttttagaggactttaaaaccatagcactaagtgctgacaagaat
gcagaggaactggaactctcatatatttctgagaatgacaactga

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_4|325_aa
MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
NKHIFPASRWEAYDPEKKWDKYTIR

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_4|978_bp
atggcgcagtacaagggcaccatgcgcgaggcaggccgtgccatgcacctcctcaagaag
cgcgaaaggcagcgggagcagatggaggtgctgaagcagcgcatcgccgaggagaccatc
ctcaagtcgcaggtggacaagaggttctcggcgcattacgacgccgtggaggccgagctg
aagtccagcacggtgggcctggtgaccctgaacgacatgaaggcccggcaggaggccctg
gtcagggagcgcgagcggcagctggccaagcgccagcacctggaggagcagcggctgcag
caggagcggcagcgggagcaggagcagcggcgcgagcgcaagcgtaagatctcctgcctg
tcctttgcactagacgacctcgatgaccaggccgacgcggccgaggccaggcgcgccgga
aacctgggcaagaaccccgacgtggacaccagcttcctgccagaccgcgaccgcgaggag
gaggagaaccggctccgagaggagctgcgccaagagtgggaggcgcagcgcgagaaagtg
aaggacgaggagatggaggtcaccttcagctactgggacggctcgggccaccggcgcacg
gtgcgggtgcgcaagggcaacacggtgcagcagttcctgaagaaggcgctgcaggggctg
cgcaaggacttcctggagctgcgctccgccggcgtggagcagctcatgttcatcaaggag
gacctcatcctgccgcactaccacaccttctacgacttcatcatcgccagggcgaggggc
aagagcgggccgctcttcagcttcgatgtgcacgatgacgtgcgcctgctcagcgacgcc
accatggagaaggacgagtcgcacgcgggcaaggtggtgctgcgcagctggtacgagaag
aacaagcacatcttccccgccagccgctgggaggcctatgaccccgagaagaagtgggac
aagtacaccatccgctaa

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_5|44_aa
MEYYAAIKNDEFMSFDVDVMVKDAAAILDYEVTMDMEDTYDETR

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_5|135_bp
atggaatactatgcagccataaaaaatgatgagttcatgtcctttgatgtagatgtgatg
gttaaagatgcagctgccatcttggattatgaagtaaccatggatatggaagacacatat
gatgaaacaaggtag

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_6|170_aa
MPCGTSSTVKKSTWRGAEVSRQRLAPAGRHREGVACRVDPFASPSLQVTASFMRHPKTLP
HSLPAKTFPQLCEQAIIISRQDAGSDDCLIPNVASQFRKRKTQNFPPCAFCASWAHQTLV
PNAATLTVAQVPREIKHLWHEGYSPDAGVNIRVALTLLHENASWICRKTD

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_6|513_bp
atgccatgtggcacaagcagcacggtgaagaagagcacatggagaggagctgaggtctcc
agacagcggctggcacccgccggccgtcatcgtgagggtgtggcctgcagagtggaccct
tttgcctcgccaagcctccaggtaaccgccagcttcatgagacaccccaagacactccca
cattccttgcctgcgaaaacatttccacagctttgtgagcaagccataattatttccaga
caagatgctggctcagatgactgcctcatccctaatgtggcttctcagtttcgcaagagg
aaaacccagaactttcctccctgtgccttctgtgcctcctgggctcaccagactttagta
cctaatgcagctaccctcaccgtggcccaggttcccagggaaataaaacatctgtggcat
gagggctacagccccgacgcaggtgtaaacatccgtgtggctctgacactcctacacgag
aatgcttcttggatttgccgtaaaacagactaa

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_7|124_aa
MRVTIARVSAFGRRPGTVSGNVRNLVFQMLTSLHSPCECPEPLQGITVLVMLYRGSWLLG
LSFASTWLHVAGTLVPRERTRAVRPADGHRGATARLALVPRERKSEAADPEGKAESAMQL
QMSG

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_7|375_bp
atgagggtgaccatcgccagggtcagtgcatttggtaggagaccagggaccgtttctggg
aatgtcaggaatcttgtctttcaaatgctcacttcacttcacagcccctgcgagtgccct
gaacctttgcaaggtataactgtcctggtgatgctgtacagaggctcttggctcttgggg
ctcagctttgcctcaacgtggcttcacgtggcgggcaccctggtgcccagagagagaacc
agagctgtccgtcctgcagatggacacaggggagccacagcacggctcgcgctggtgccc
agagagagaaagagtgaagctgctgaccctgaaggcaaggcagagtctgccatgcagctg
cagatgtcggggtga

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_8|132_aa
MAPSRRPTGCALLQAWGLILTSPRQQQPFIFPTKGRENKRWKSRTFSTLEPSAQIHGWQE
LDFSGQWLKDLQATLEKGHEVASDTSSISCSWGSLLSQMVQMLQSLTSRHKRNVLEAIQH
CPQCRRMSRSVC

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_8|399_bp
atggccccgtcgaggcggccaaccggatgtgccctcctgcaggcctggggcctcatcctc
accagccctcggcaacagcagccgttcatttttccaacgaaggggagggaaaacaagcgc
tggaagtcaagaactttctcaacactggagcccagtgcccaaatccatggctggcaggag
ctggacttcagtggccagtggctgaaagacctgcaggccactcttgagaaagggcatgaa
gtggcctcagacacctccagtatctcctgttcatgggggtccctgctctcccaaatggtt
cagatgcttcaaagtttaaccagtagacataagaggaatgttctggaagccattcagcac
tgtccacaatgtcgcaggatgagcagatctgtctgctag

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_9|251_aa
MADGCLAIPQIHGRAAPSGSLIPMQAGSSARCFSNPFCFSESKGLLTAHEPEHLKQIYSQ
LEQCSNKASKYKAKTDRIQGEIHEFHVIAGDFNTSISVIDKSNRQNISEVIVVLSRTINQ
LDVIDIVDNLSNNSRPGTPGAVLNASPSPLTAAPLPGPETHRGLRKSLNLPVTWKPFSFP
LSCLSGLNQCTCYMYLIDVSCLIKCVKSVLRCSLSFTRAPKDNKKKKDAKKLGKKDKDPV
NKSWGKAKMKK

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_9|756_bp
atggctgatggttgtttggctattccacagattcacggcagagcagctccttctggatcc
ctcatccccatgcaagctgggagctctgctcggtgcttctcaaatccgttttgtttttct
gagtcaaaggggctgctgacagcccatgagccggagcacctgaagcaaatctattcccag
cttgaacagtgcagcaacaaagcatcaaaatataaagcaaaaacagatagaatacaagga
gaaatacatgaattccatgttatagctggagacttcaacaccagtatatcagtaattgac
aaatctaacaggcagaatatcagtgaggtcatagttgtactgagcagaaccatcaatcaa
ctggatgtaattgacattgtagacaatttatctaacaacagcagaccggggaccccgggc
gctgtcctcaatgcctccccctcaccactcaccgccgccccattgccaggacccgagact
cacaggggtctcagaaaatctttgaatctacctgtgacctggaagcccttcagcttcccg
ttgtcctgtctttctggactgaatcaatgtacgtgttatatgtatttgattgatgtctct
tgtctcataaaatgtgtaaaatcggttctccgctgctctctgagcttcacaagggcaccc
aaggacaacaagaagaagaaagatgccaaaaagttgggcaagaaagacaaagacccagtg
aacaaatcctggggcaaagccaaaatgaagaagtga

>gi568815592f:3749812_3950786|GENSCAN_predicted_peptide_10|131_aa
MSSNSTKNDDTRTGETTQLEDAEQASEPDSVMPEILELSDQKFKVPVNNRLRALMEKVDH
MKEQMGNVSREKKFAEFEQDEPIALLRKLKKRSKGNATNQKHSNRNLKMPLTGSSVARKR
LRKISDVTLFC

>gi568815592f:3749812_3950786|GENSCAN_predicted_CDS_10|396_bp
atgtctagcaattcaacaaaaaatgatgacacacgaacaggcgaaacaacacagcttgaa
gacgcagaacaagcatcagagccagactcggttatgcctgagattctggaattatcagac
cagaaatttaaagtacctgtgaataataggctaagggctctaatggaaaaagtggatcat
atgaaagaacagatgggcaatgtaagcagagaaaagaaatttgcagaatttgagcaagat
gaacccattgcgctgttacggaaactcaagaaaagatcaaaaggaaatgctacaaatcaa
aaacactctaacagaaatttaaaaatgcctttgacgggctcatcagtagctcgaaaacgg
ctgaggaaaatcagtgacgtcacactgttctgctga