Result of FASTA (omim) for pF1KB9826
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9826, 321 aa
  1>>>pF1KB9826 321 - 321 aa - 321 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0260+/-0.000388; mu= -8.9131+/- 0.024
 mean_var=309.4862+/-62.015, 0's: 0 Z-trim(123.2): 127  B-trim: 28 in 1/57
 Lambda= 0.072904
 statistics sampled from 42520 (42647) to 42520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.5), width:  16
 Scan time:  9.300

The best scores are:                                      opt bits E(85289)
NP_002478 (OMIM: 176270,602117) necdin [Homo sapie ( 321) 2164 240.3 3.9e-63
NP_803182 (OMIM: 300470,300971) melanoma-associate ( 606)  650 81.3 5.7e-15
NP_957516 (OMIM: 300470,300971) melanoma-associate ( 606)  650 81.3 5.7e-15
NP_055414 (OMIM: 300470,300971) melanoma-associate ( 606)  650 81.3 5.7e-15
NP_619649 (OMIM: 608243) non-structural maintenanc ( 304)  631 79.1 1.3e-14
NP_071432 (OMIM: 609267) melanoma-associated antig ( 307)  615 77.4 4.2e-14
NP_808225 (OMIM: 300132) trophinin isoform 4 [Homo ( 309)  615 77.4 4.2e-14
XP_016885262 (OMIM: 300132) PREDICTED: trophinin i ( 662)  615 77.6 7.8e-14
XP_016885261 (OMIM: 300132) PREDICTED: trophinin i ( 662)  615 77.6 7.8e-14
XP_016885260 (OMIM: 300132) PREDICTED: trophinin i ( 706)  615 77.6 8.2e-14
NP_057241 (OMIM: 300132) trophinin isoform 2 [Homo ( 706)  615 77.6 8.2e-14
NP_808224 (OMIM: 300132) trophinin isoform 2 [Homo ( 706)  615 77.6 8.2e-14
XP_016885259 (OMIM: 300132) PREDICTED: trophinin i ( 706)  615 77.6 8.2e-14
XP_016885258 (OMIM: 300132) PREDICTED: trophinin i ( 706)  615 77.6 8.2e-14
NP_001258113 (OMIM: 300132) trophinin isoform 7 [H (1034)  615 77.7 1.1e-13
XP_016885257 (OMIM: 300132) PREDICTED: trophinin i (1387)  615 77.8 1.4e-13
XP_011529116 (OMIM: 300132) PREDICTED: trophinin i (1387)  615 77.8 1.4e-13
XP_011529115 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_016885256 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
NP_001034794 (OMIM: 300132) trophinin isoform 5 [H (1431)  615 77.8 1.5e-13
XP_011529113 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_011529110 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_011529114 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_006724663 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_011529111 (OMIM: 300132) PREDICTED: trophinin i (1431)  615 77.8 1.5e-13
XP_011529137 (OMIM: 300224) PREDICTED: melanoma-as ( 778)  602 76.3 2.3e-13
XP_016885468 (OMIM: 300224) PREDICTED: melanoma-as ( 778)  602 76.3 2.3e-13
XP_016885469 (OMIM: 300224) PREDICTED: melanoma-as ( 778)  602 76.3 2.3e-13
NP_001005332 (OMIM: 300224) melanoma-associated an ( 778)  602 76.3 2.3e-13
XP_016885467 (OMIM: 300224) PREDICTED: melanoma-as ( 778)  602 76.3 2.3e-13
NP_008917 (OMIM: 300224) melanoma-associated antig ( 778)  602 76.3 2.3e-13
NP_001005333 (OMIM: 300224) melanoma-associated an ( 834)  602 76.3 2.4e-13
XP_016885365 (OMIM: 300765) PREDICTED: melanoma-as ( 739)  541 69.9 1.9e-11
NP_803881 (OMIM: 300765) melanoma-associated antig ( 739)  541 69.9 1.9e-11
NP_001092270 (OMIM: 300702) melanoma-associated an ( 739)  541 69.9 1.9e-11
XP_011529124 (OMIM: 300765) PREDICTED: melanoma-as ( 739)  541 69.9 1.9e-11
XP_006724671 (OMIM: 300765) PREDICTED: melanoma-as ( 741)  541 69.9 1.9e-11
NP_803879 (OMIM: 300765) melanoma-associated antig ( 741)  541 69.9 1.9e-11
NP_001258992 (OMIM: 300702) melanoma-associated an ( 741)  541 69.9 1.9e-11
XP_006724670 (OMIM: 300765) PREDICTED: melanoma-as ( 741)  541 69.9 1.9e-11
NP_110428 (OMIM: 300765) melanoma-associated antig ( 741)  541 69.9 1.9e-11
NP_001258991 (OMIM: 300702) melanoma-associated an ( 741)  541 69.9 1.9e-11
NP_002358 (OMIM: 300153) melanoma-associated antig ( 346)  532 68.7   2e-11
NP_061939 (OMIM: 176270,605283,615547) MAGE-like p (1249)  546 70.5   2e-11
NP_001258112 (OMIM: 300132) trophinin isoform 6 [H ( 962)  523 68.0 8.6e-11
NP_065983 (OMIM: 300759) melanoma-associated antig ( 957)  518 67.5 1.2e-10
NP_803134 (OMIM: 300097) melanoma-associated antig ( 347)  505 65.9 1.4e-10
NP_002354 (OMIM: 300097) melanoma-associated antig ( 347)  505 65.9 1.4e-10
NP_796379 (OMIM: 300097) melanoma-associated antig ( 347)  505 65.9 1.4e-10
XP_011543814 (OMIM: 300098) PREDICTED: melanoma-as ( 319)  491 64.4 3.7e-10


>>NP_002478 (OMIM: 176270,602117) necdin [Homo sapiens]   (321 aa)
 initn: 2164 init1: 2164 opt: 2164  Z-score: 1254.4  bits: 240.3 E(85289): 3.9e-63
Smith-Waterman score: 2164; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KB9 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMIIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMIIW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 FPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDRVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREALEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREALEE
              250       260       270       280       290       300

              310       320 
pF1KB9 ARALREANPTAHYPRSSVSED
       :::::::::::::::::::::
NP_002 ARALREANPTAHYPRSSVSED
              310       320 

>>NP_803182 (OMIM: 300470,300971) melanoma-associated an  (606 aa)
 initn: 722 init1: 630 opt: 650  Z-score: 389.8  bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)

         40        50        60        70        80        90      
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
                                     ::: .  :.. :: .  :. .:   ::  .
NP_803 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
       220       230       240       250        260       270      

        100        110       120       130       140       150     
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
        :.: .:..:. :.:.::: :. :   ::.::.:  :      :..:..  : .:::..:
NP_803 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
        280       290       300       310       320       330      

         160       170       180       190       200       210     
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
       .  . .   . :...::: .   .. ..  :  :::...::.:...:  . :...:.:::
NP_803 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
        340       350       360       370       380       390      

         220       230       240       250       260       270     
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
        :::::  .:: ::::.::::.:::...:: : :::  .::::::::: :.  : .::..
NP_803 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
        400       410       420       430       440       450      

         280       290        300       310       320              
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED             
       ..:  .: ::::. : ..::::.: . .:  ::   :                       
NP_803 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
        460       470       480       490       500       510      

NP_803 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
        520       530       540       550       560       570      

>>NP_957516 (OMIM: 300470,300971) melanoma-associated an  (606 aa)
 initn: 722 init1: 630 opt: 650  Z-score: 389.8  bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)

         40        50        60        70        80        90      
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
                                     ::: .  :.. :: .  :. .:   ::  .
NP_957 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
       220       230       240       250        260       270      

        100        110       120       130       140       150     
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
        :.: .:..:. :.:.::: :. :   ::.::.:  :      :..:..  : .:::..:
NP_957 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
        280       290       300       310       320       330      

         160       170       180       190       200       210     
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
       .  . .   . :...::: .   .. ..  :  :::...::.:...:  . :...:.:::
NP_957 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
        340       350       360       370       380       390      

         220       230       240       250       260       270     
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
        :::::  .:: ::::.::::.:::...:: : :::  .::::::::: :.  : .::..
NP_957 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
        400       410       420       430       440       450      

         280       290        300       310       320              
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED             
       ..:  .: ::::. : ..::::.: . .:  ::   :                       
NP_957 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
        460       470       480       490       500       510      

NP_957 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
        520       530       540       550       560       570      

>>NP_055414 (OMIM: 300470,300971) melanoma-associated an  (606 aa)
 initn: 722 init1: 630 opt: 650  Z-score: 389.8  bits: 81.3 E(85289): 5.7e-15
Smith-Waterman score: 650; 42.1% identity (69.6% similar) in 247 aa overlap (67-311:248-493)

         40        50        60        70        80        90      
pF1KB9 TLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPA
                                     ::: .  :.. :: .  :. .:   ::  .
NP_055 SRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR-RAAKLQSSQEPEAPPPRDV
       220       230       240       250        260       270      

        100        110       120       130       140       150     
pF1KB9 QLVQ-KAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHL
        :.: .:..:. :.:.::: :. :   ::.::.:  :      :..:..  : .:::..:
NP_055 ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGIQL
        280       290       300       310       320       330      

         160       170       180       190       200       210     
pF1KB9 RLTSLHTMEFALVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLR
       .  . .   . :...::: .   .. ..  :  :::...::.:...:  . :...:.:::
NP_055 KEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIWEVLR
        340       350       360       370       380       390      

         220       230       240       250       260       270     
pF1KB9 ILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQI
        :::::  .:: ::::.::::.:::...:: : :::  .::::::::: :.  : .::..
NP_055 KLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYETSKMKV
        400       410       420       430       440       450      

         280       290        300       310       320              
pF1KB9 MEFLARVFKKDPQAWPSRYREALE-EARALREANPTAHYPRSSVSED             
       ..:  .: ::::. : ..::::.: . .:  ::   :                       
NP_055 LKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPC
        460       470       480       490       500       510      

NP_055 NWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTSGGFSAGASLT
        520       530       540       550       560       570      

>>NP_619649 (OMIM: 608243) non-structural maintenance of  (304 aa)
 initn: 633 init1: 430 opt: 631  Z-score: 383.3  bits: 79.1 E(85289): 1.3e-14
Smith-Waterman score: 631; 39.9% identity (68.1% similar) in 263 aa overlap (59-316:46-304)

       30        40        50        60        70        80        
pF1KB9 SEGVPPSATLAEPQSPPLGPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQP
                                     .::.    : . :  . .: . :.   :: 
NP_619 ERDRDWSHSGNPGASRAGEDARVLRDGFAEEAPSTSRGPGGSQ--GSQGPSPQGARRAQA
          20        30        40        50          60        70   

       90         100       110       120       130       140      
pF1KB9 GPA--PPAPAQLVQKAHELMWYVLVKDQKKMIIWFPDMVKDVIGSYKKWCRSILRRTSLI
       .::  : .  ::  :. ::. ..:.:::::. :   :..: :::.::    ....:..  
NP_619 APAVGPRSQKQLELKVSELVQFLLIKDQKKIPIKRADILKHVIGDYKDIFPDLFKRAAER
            80        90       100       110       120       130   

        150       160       170       180        190       200     
pF1KB9 LARVFGLHLRLTSLHTMEFALVKALEPEELDRVALSNR-MPMTGLLLMILSLIYVKGRGA
       :  ::: .:     ..  . :...::: : :    ...  : ::::...:.::..::   
NP_619 LQYVFGYKLVELEPKSNTYILINTLEPVEEDAEMRGDQGTPTTGLLMIVLGLIFMKGNTI
           140       150       160       170       180       190   

         210       220       230       240       250       260     
pF1KB9 RESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFVQMNYLKYQRVPYVEPPEYEFFWGSR
       .:. .:. :: ::. : :::  ::: .:::::.::.. ::.:.:.:...: .::: :: :
NP_619 KETEAWDFLRRLGVYPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPR
           200       210       220       230       240       250   

         270       280       290         300       310       320 
pF1KB9 ASREITKMQIMEFLARVFKKDPQAWPSRYREAL--EEARALREANPTAHYPRSSVSED
       .. : .::....:.:.: ..::. ::..: :::  :: ::  . .:..  : :     
NP_619 TNLETSKMKVLKFVAKVHNQDPKDWPAQYCEALADEENRA--RPQPSGPAPSS     
           260       270       280       290         300         

>>NP_071432 (OMIM: 609267) melanoma-associated antigen F  (307 aa)
 initn: 584 init1: 463 opt: 615  Z-score: 374.2  bits: 77.4 E(85289): 4.2e-14
Smith-Waterman score: 615; 40.3% identity (66.3% similar) in 288 aa overlap (29-311:7-292)

               10        20        30        40        50        60
pF1KB9 MSEQSKDLSDPNFAAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQA
                                   :.:.:   . .: ..   : : :: :.   . 
NP_071                       MLQTPESRGLPVPQAEGEKDGGHDGETRAPTASQ--ER
                                     10        20        30        

               70        80          90       100       110        
pF1KB9 PNDEGDPKALQQAAEEGRAHQAPSA--AQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMI
       :..:      . ::: . ....  :  :.      :  .: . . ::. ..::::.::  
NP_071 PKEELGAGREEGAAEPALTRKGARALAAKALARRRAYRRLNRTVAELVQFLLVKDKKKSP
         40        50        60        70        80        90      

      120       130       140       150       160       170        
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEP-EELD
       :   .::: :::. :    .:. :..  :  :::..:.  . .   . :.. :.: :: .
NP_071 ITRSEMVKYVIGDLKILFPDIIARAAEHLRYVFGFELKQFDRKHHTYILINKLKPLEEEE
        100       110       120       130       140       150      

       180       190       200       210       220       230       
pF1KB9 RVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITE
       .  :..  :  :::.:::.:::..: .:::. ::..:: ::..: : :  ::  ..:: :
NP_071 EEDLGGDGPRLGLLMMILGLIYMRGNSAREAQVWEMLRRLGVQPSKYHFLFGYPKRLIME
        160       170       180       190       200       210      

       240       250       260       270       280       290       
pF1KB9 EFVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREA
       .:::. ::.:.:::...:::::: :: :.. ::.::... :.:.. ::.:: :: .::::
NP_071 DFVQQRYLSYRRVPHTNPPEYEFSWGPRSNLEISKMEVLGFVAKLHKKEPQHWPVQYREA
        220       230       240       250       260       270      

        300        310       320      
pF1KB9 L-EEA-RALREANPTAHYPRSSVSED     
       : .:: ::  .:   :               
NP_071 LADEADRARAKARAEASMRARASARAGIHLW
        280       290       300       

>>NP_808225 (OMIM: 300132) trophinin isoform 4 [Homo sap  (309 aa)
 initn: 570 init1: 460 opt: 615  Z-score: 374.1  bits: 77.4 E(85289): 4.2e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:38-247)

      60        70        80        90       100        110        
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
                                     ::::  . ..: .:..:. :.::::: :. 
NP_808 GYRVPLFQSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
        10        20        30        40        50        60       

      120       130       140       150       160       170        
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
       :   ::..:::  : ..   :..:.:  : ..: ..:.  . ..  . :... :      
NP_808 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
        70        80        90       100       110       120       

      180       190       200       210       220       230        
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
       .. ..  :  :::..:::.:...:  : :...:.::: :::::  .:: ::.::::::.:
NP_808 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
        130       140       150       160       170       180      

      240       250       260       270       280       290        
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
       ::...::.:.:::  .::::::::: :. .: .::....:  :: ::::. :  .::::.
NP_808 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
        190       200       210       220       230       240      

      300       310       320                                      
pF1KB9 EEARALREANPTAHYPRSSVSED                                     
       :                                                           
NP_808 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
        250       260       270       280       290       300      

>>XP_016885262 (OMIM: 300132) PREDICTED: trophinin isofo  (662 aa)
 initn: 577 init1: 460 opt: 615  Z-score: 369.3  bits: 77.6 E(85289): 7.8e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:391-600)

      60        70        80        90       100        110        
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
                                     ::::  . ..: .:..:. :.::::: :. 
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
              370       380       390       400       410       420

      120       130       140       150       160       170        
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
       :   ::..:::  : ..   :..:.:  : ..: ..:.  . ..  . :... :      
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
              430       440       450       460       470          

      180       190       200       210       220       230        
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
       .. ..  :  :::..:::.:...:  : :...:.::: :::::  .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
     480       490       500       510       520       530         

      240       250       260       270       280       290        
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
       ::...::.:.:::  .::::::::: :. .: .::....:  :: ::::. :  .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
     540       550       560       570       580       590         

      300       310       320                                      
pF1KB9 EEARALREANPTAHYPRSSVSED                                     
       :                                                           
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
     600       610       620       630       640       650         

>>XP_016885261 (OMIM: 300132) PREDICTED: trophinin isofo  (662 aa)
 initn: 577 init1: 460 opt: 615  Z-score: 369.3  bits: 77.6 E(85289): 7.8e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:391-600)

      60        70        80        90       100        110        
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
                                     ::::  . ..: .:..:. :.::::: :. 
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
              370       380       390       400       410       420

      120       130       140       150       160       170        
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
       :   ::..:::  : ..   :..:.:  : ..: ..:.  . ..  . :... :      
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
              430       440       450       460       470          

      180       190       200       210       220       230        
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
       .. ..  :  :::..:::.:...:  : :...:.::: :::::  .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
     480       490       500       510       520       530         

      240       250       260       270       280       290        
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
       ::...::.:.:::  .::::::::: :. .: .::....:  :: ::::. :  .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
     540       550       560       570       580       590         

      300       310       320                                      
pF1KB9 EEARALREANPTAHYPRSSVSED                                     
       :                                                           
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
     600       610       620       630       640       650         

>>XP_016885260 (OMIM: 300132) PREDICTED: trophinin isofo  (706 aa)
 initn: 577 init1: 460 opt: 615  Z-score: 368.9  bits: 77.6 E(85289): 8.2e-14
Smith-Waterman score: 615; 44.5% identity (73.5% similar) in 211 aa overlap (90-299:435-644)

      60        70        80        90       100        110        
pF1KB9 APNDEGDPKALQQAAEEGRAHQAPSAAQPGPAPPAPAQLVQ-KAHELMWYVLVKDQKKMI
                                     ::::  . ..: .:..:. :.::::: :. 
XP_016 TRGKRNRKSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIP
          410       420       430       440       450       460    

      120       130       140       150       160       170        
pF1KB9 IWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFALVKALEPEELDR
       :   ::..:::  : ..   :..:.:  : ..: ..:.  . ..  . :... :      
XP_016 IKRSDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSA-GI
          470       480       490       500       510       520    

      180       190       200       210       220       230        
pF1KB9 VALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEE
       .. ..  :  :::..:::.:...:  : :...:.::: :::::  .:: ::.::::::.:
XP_016 LGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDE
           530       540       550       560       570       580   

      240       250       260       270       280       290        
pF1KB9 FVQMNYLKYQRVPYVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREAL
       ::...::.:.:::  .::::::::: :. .: .::....:  :: ::::. :  .::::.
XP_016 FVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAV
           590       600       610       620       630       640   

      300       310       320                                      
pF1KB9 EEARALREANPTAHYPRSSVSED                                     
       :                                                           
XP_016 EMEVQAAAVAVAEAEARAEIYSPCLQIPLINCSSPSHGAKVHPWNLCPHSSQGSYGQSAE
           650       660       670       680       690       700   




321 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:30:27 2016 done: Fri Nov  4 19:30:28 2016
 Total Scan time:  9.300 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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