Result of FASTA (omim) for pF1KB9820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9820, 311 aa
  1>>>pF1KB9820 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9826+/-0.000283; mu= 4.1386+/- 0.018
 mean_var=155.0299+/-31.723, 0's: 0 Z-trim(122.8): 98  B-trim: 174 in 1/55
 Lambda= 0.103007
 statistics sampled from 41436 (41547) to 41436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.487), width:  16
 Scan time:  8.430

The best scores are:                                      opt bits E(85289)
NP_940853 (OMIM: 300949) forkhead box protein R2 [ ( 311) 2244 344.5 1.6e-94
NP_859072 (OMIM: 615755) forkhead box protein R1 [ ( 292) 1108 175.6   1e-43
XP_016873064 (OMIM: 615755) PREDICTED: forkhead bo ( 297) 1080 171.5 1.9e-42
XP_016873065 (OMIM: 615755) PREDICTED: forkhead bo ( 271)  683 112.5   1e-24
XP_011523664 (OMIM: 600838,601705) PREDICTED: fork ( 648)  307 56.8 1.4e-07
XP_016880717 (OMIM: 600838,601705) PREDICTED: fork ( 648)  307 56.8 1.4e-07
XP_011523661 (OMIM: 600838,601705) PREDICTED: fork ( 649)  307 56.8 1.4e-07
XP_011523660 (OMIM: 600838,601705) PREDICTED: fork ( 649)  307 56.8 1.4e-07
XP_005258103 (OMIM: 600838,601705) PREDICTED: fork ( 648)  296 55.2 4.2e-07
NP_003584 (OMIM: 600838,601705) forkhead box prote ( 648)  296 55.2 4.2e-07
XP_016880720 (OMIM: 600838,601705) PREDICTED: fork ( 384)  290 54.2 5.1e-07
XP_016880718 (OMIM: 600838,601705) PREDICTED: fork ( 567)  292 54.6 5.7e-07
XP_016880719 (OMIM: 600838,601705) PREDICTED: fork ( 485)  290 54.2 6.1e-07
XP_011523669 (OMIM: 600838,601705) PREDICTED: fork ( 462)  288 53.9 7.2e-07
XP_011523672 (OMIM: 600838,601705) PREDICTED: fork ( 436)  283 53.2 1.2e-06
XP_011523670 (OMIM: 600838,601705) PREDICTED: fork ( 436)  283 53.2 1.2e-06
XP_011523671 (OMIM: 600838,601705) PREDICTED: fork ( 436)  283 53.2 1.2e-06
XP_016874307 (OMIM: 609429) PREDICTED: forkhead bo ( 474)  277 52.3 2.3e-06
NP_998761 (OMIM: 609429) forkhead box protein N4 [ ( 517)  277 52.3 2.5e-06
XP_011536224 (OMIM: 609429) PREDICTED: forkhead bo ( 518)  277 52.3 2.5e-06
XP_011536225 (OMIM: 609429) PREDICTED: forkhead bo ( 314)  265 50.4 5.6e-06
XP_016874308 (OMIM: 609429) PREDICTED: forkhead bo ( 377)  265 50.4 6.6e-06
XP_005264340 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
NP_002149 (OMIM: 143089) forkhead box protein N2 [ ( 431)  221 43.9 0.00068
XP_006712064 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_005264339 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_016859448 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_011531110 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_016859447 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_016859446 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_016859445 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
XP_006712065 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  221 43.9 0.00068
NP_001129121 (OMIM: 612351) forkhead box protein I ( 420)  220 43.8 0.00074
NP_036320 (OMIM: 274600,600791,601093) forkhead bo ( 378)  206 41.7  0.0029
NP_005188 (OMIM: 602628) forkhead box protein N3 i ( 468)  203 41.3  0.0046
NP_001078940 (OMIM: 602628) forkhead box protein N ( 490)  203 41.3  0.0048
NP_658982 (OMIM: 274600,600791,601093) forkhead bo ( 283)  198 40.4  0.0051


>>NP_940853 (OMIM: 300949) forkhead box protein R2 [Homo  (311 aa)
 initn: 2244 init1: 2244 opt: 2244  Z-score: 1817.7  bits: 344.5 E(85289): 1.6e-94
Smith-Waterman score: 2244; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKCYQSQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKCYQSQKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 WQINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPDGWKSTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 WQINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPDGWKSTI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 HYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRERIQECMS
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_940 HYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRVLAFAQRERIQECMS
              250       260       270       280       290       300

              310 
pF1KB9 QPELLTSLFDL
       :::::::::::
NP_940 QPELLTSLFDL
              310 

>>NP_859072 (OMIM: 615755) forkhead box protein R1 [Homo  (292 aa)
 initn: 1116 init1: 600 opt: 1108  Z-score: 905.8  bits: 175.6 E(85289): 1e-43
Smith-Waterman score: 1108; 57.2% identity (78.1% similar) in 292 aa overlap (26-311:1-292)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
                                : :::::  ::..  :::: ::.:.. ..:::..:
NP_859                          MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLP
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
        ...:.:: :::  ::::::::.:::. : :. :.     .::::.  :  :::::.: .
NP_859 LEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDA
          40        50        60        70        80        90     

              130       140       150        160          170      
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDDNS---LQSPEMKC-Y
       .:::   :::: .:::..:: .:.   ::: .:::::: ::. .:.:   : ::. .   
NP_859 SCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPL
         100       110       120       130       140       150     

         180        190       200       210       220       230    
pF1KB9 QSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       ::..: : ..:  . :.:::::  :::::::::.  :::.::.::.:::.::::: :::.
NP_859 QSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPE
         160       170       180       190       200       210     

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
       :::.:...:::: ::::::: :..   ..::::::::::.:::::: ::.:::: .. : 
NP_859 GWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLES
         220       230       240       250       260       270     

          300       310 
pF1KB9 IQECMSQPELLTSLFDL
       ::.:::::...  ::::
NP_859 IQQCMSQPDVMPFLFDL
         280       290  

>>XP_016873064 (OMIM: 615755) PREDICTED: forkhead box pr  (297 aa)
 initn: 1088 init1: 572 opt: 1080  Z-score: 883.2  bits: 171.5 E(85289): 1.9e-42
Smith-Waterman score: 1080; 57.6% identity (78.1% similar) in 283 aa overlap (26-302:1-283)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
                                : :::::  ::..  :::: ::.:.. ..:::..:
XP_016                          MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLP
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
        ...:.:: :::  ::::::::.:::. : :. :.     .::::.  :  :::::.: .
XP_016 LEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDA
          40        50        60        70        80        90     

              130       140       150        160          170      
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDDNS---LQSPEMKC-Y
       .:::   :::: .:::..:: .:.   ::: .:::::: ::. .:.:   : ::. .   
XP_016 SCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPL
         100       110       120       130       140       150     

         180        190       200       210       220       230    
pF1KB9 QSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       ::..: : ..:  . :.:::::  :::::::::.  :::.::.::.:::.::::: :::.
XP_016 QSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPE
         160       170       180       190       200       210     

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
       :::.:...:::: ::::::: :..   ..::::::::::.:::::: ::.:::: .. : 
XP_016 GWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLES
         220       230       240       250       260       270     

          300       310      
pF1KB9 IQECMSQPELLTSLFDL     
       ::.:::::              
XP_016 IQQCMSQPGVKTCCAWAQGEET
         280       290       

>>XP_016873065 (OMIM: 615755) PREDICTED: forkhead box pr  (271 aa)
 initn: 925 init1: 490 opt: 683  Z-score: 564.9  bits: 112.5 E(85289): 1e-24
Smith-Waterman score: 869; 51.2% identity (69.6% similar) in 283 aa overlap (26-302:1-257)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
                                : :::::  ::..  :::: ::.:.. ..:::..:
XP_016                          MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLP
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
        ...:.:: :::  ::::::::.:::. : :. :.     .::::.  :  :::::.: .
XP_016 LEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDA
          40        50        60        70        80        90     

              130       140       150        160          170      
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDDNS---LQSPEMKC-Y
       .:::   :::: .:::..:: .:.   ::: .:::::: ::. .:.:   : ::. .   
XP_016 SCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPL
         100       110       120       130       140       150     

         180        190       200       210       220       230    
pF1KB9 QSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       ::..: : ..:  . :.:::::  :::::::::.  :::.::.::.:::           
XP_016 QSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTR-----------
         160       170       180       190       200               

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
                      ::::: :..   ..::::::::::.:::::: ::.:::: .. : 
XP_016 ---------------FEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLES
                         210       220       230       240         

          300       310      
pF1KB9 IQECMSQPELLTSLFDL     
       ::.:::::              
XP_016 IQQCMSQPGVKTCCAWAQGEET
     250       260       270 

>>XP_011523664 (OMIM: 600838,601705) PREDICTED: forkhead  (648 aa)
 initn: 296 init1: 215 opt: 307  Z-score: 257.3  bits: 56.8 E(85289): 1.4e-07
Smith-Waterman score: 307; 31.6% identity (56.0% similar) in 225 aa overlap (94-308:168-384)

            70        80        90        100       110            
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQP---PQKDEG
                                     ::  :. . :   :  :.:.    ::  .:
XP_011 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLQG
       140       150       160       170       180       190       

     120        130       140       150       160       170        
pF1KB9 SNCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQ
       :. . .  :.::  .    : :::..   :   :.        :  .:   : .    ::
XP_011 SEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQ
       200       210       220       230            240       250  

        180          190       200       210       220       230   
pF1KB9 SQKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAP
        :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: :::
XP_011 YQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAP
            260       270       280       290       300       310  

           240       250       260       270       280       290   
pF1KB9 DGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRE
       ::::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .  
XP_011 DGWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPI
            320       330         340        350       360         

           300       310                                           
pF1KB9 RIQECMSQPELLTSLFDL                                          
        ... :..:: : ::                                             
XP_011 AVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPA
     370       380       390       400       410       420         

>>XP_016880717 (OMIM: 600838,601705) PREDICTED: forkhead  (648 aa)
 initn: 296 init1: 215 opt: 307  Z-score: 257.3  bits: 56.8 E(85289): 1.4e-07
Smith-Waterman score: 307; 31.6% identity (56.0% similar) in 225 aa overlap (94-308:168-384)

            70        80        90        100       110            
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQP---PQKDEG
                                     ::  :. . :   :  :.:.    ::  .:
XP_016 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLQG
       140       150       160       170       180       190       

     120        130       140       150       160       170        
pF1KB9 SNCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQ
       :. . .  :.::  .    : :::..   :   :.        :  .:   : .    ::
XP_016 SEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQ
       200       210       220       230            240       250  

        180          190       200       210       220       230   
pF1KB9 SQKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAP
        :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: :::
XP_016 YQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAP
            260       270       280       290       300       310  

           240       250       260       270       280       290   
pF1KB9 DGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRE
       ::::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .  
XP_016 DGWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPI
            320       330         340        350       360         

           300       310                                           
pF1KB9 RIQECMSQPELLTSLFDL                                          
        ... :..:: : ::                                             
XP_016 AVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPA
     370       380       390       400       410       420         

>>XP_011523661 (OMIM: 600838,601705) PREDICTED: forkhead  (649 aa)
 initn: 292 init1: 215 opt: 307  Z-score: 257.3  bits: 56.8 E(85289): 1.4e-07
Smith-Waterman score: 307; 31.6% identity (56.0% similar) in 225 aa overlap (94-308:169-385)

            70        80        90        100       110            
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQP---PQKDEG
                                     ::  :. . :   :  :.:.    ::  .:
XP_011 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLQG
      140       150       160       170       180       190        

     120        130       140       150       160       170        
pF1KB9 SNCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQ
       :. . .  :.::  .    : :::..   :   :.        :  .:   : .    ::
XP_011 SEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQ
      200       210       220       230            240       250   

        180          190       200       210       220       230   
pF1KB9 SQKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAP
        :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: :::
XP_011 YQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAP
           260       270       280       290       300       310   

           240       250       260       270       280       290   
pF1KB9 DGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRE
       ::::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .  
XP_011 DGWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPI
           320       330         340        350       360       370

           300       310                                           
pF1KB9 RIQECMSQPELLTSLFDL                                          
        ... :..:: : ::                                             
XP_011 AVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPA
              380       390       400       410       420       430

>>XP_011523660 (OMIM: 600838,601705) PREDICTED: forkhead  (649 aa)
 initn: 292 init1: 215 opt: 307  Z-score: 257.3  bits: 56.8 E(85289): 1.4e-07
Smith-Waterman score: 307; 31.6% identity (56.0% similar) in 225 aa overlap (94-308:169-385)

            70        80        90        100       110            
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQP---PQKDEG
                                     ::  :. . :   :  :.:.    ::  .:
XP_011 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLQG
      140       150       160       170       180       190        

     120        130       140       150       160       170        
pF1KB9 SNCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQ
       :. . .  :.::  .    : :::..   :   :.        :  .:   : .    ::
XP_011 SEVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQ
      200       210       220       230            240       250   

        180          190       200       210       220       230   
pF1KB9 SQKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAP
        :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: :::
XP_011 YQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAP
           260       270       280       290       300       310   

           240       250       260       270       280       290   
pF1KB9 DGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRE
       ::::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .  
XP_011 DGWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPI
           320       330         340        350       360       370

           300       310                                           
pF1KB9 RIQECMSQPELLTSLFDL                                          
        ... :..:: : ::                                             
XP_011 AVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPA
              380       390       400       410       420       430

>>XP_005258103 (OMIM: 600838,601705) PREDICTED: forkhead  (648 aa)
 initn: 296 init1: 219 opt: 296  Z-score: 248.5  bits: 55.2 E(85289): 4.2e-07
Smith-Waterman score: 296; 30.8% identity (55.8% similar) in 224 aa overlap (94-308:169-384)

            70        80        90        100       110         120
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQPPQKDE--GS
                                     ::  :. . :   :  :.:.  .  .  ::
XP_005 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLGS
      140       150       160       170       180       190        

               130       140       150       160       170         
pF1KB9 NCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQS
       . . .  :.::  .    : :::..   :   :.        :  .:   : .    :: 
XP_005 EVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQY
      200       210       220       230            240       250   

       180          190       200       210       220       230    
pF1KB9 QKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: ::::
XP_005 QRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPD
           260       270       280       290       300       310   

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
       :::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .   
XP_005 GWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPIA
           320       330         340        350       360       370

          300       310                                            
pF1KB9 IQECMSQPELLTSLFDL                                           
       ... :..:: : ::                                              
XP_005 VRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPAP
              380       390       400       410       420       430

>>NP_003584 (OMIM: 600838,601705) forkhead box protein N  (648 aa)
 initn: 296 init1: 219 opt: 296  Z-score: 248.5  bits: 55.2 E(85289): 4.2e-07
Smith-Waterman score: 296; 30.8% identity (55.8% similar) in 224 aa overlap (94-308:169-384)

            70        80        90        100       110         120
pF1KB9 RPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPS-GKEDLTNISPFPQPPQKDE--GS
                                     ::  :. . :   :  :.:.  .  .  ::
NP_003 ETTLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLGS
      140       150       160       170       180       190        

               130       140       150       160       170         
pF1KB9 NCS-EDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKC--YQS
       . . .  :.::  .    : :::..   :   :.        :  .:   : .    :: 
NP_003 EVKVKPPVLESGAGMFCYQPPLQHMYCSSQPPFH-----QYSPGGGSYPIPYLGSSHYQY
      200       210       220       230            240       250   

       180          190       200       210       220       230    
pF1KB9 QKLW---QINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       :..    . ....  . .:  . : :: .::.:.   .: :.:::::  .:::.: ::::
NP_003 QRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPD
           260       270       280       290       300       310   

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
       :::.....:: .   :::: .  :. ...: ..::: :.     .. :: .     .   
NP_003 GWKNSVRHNLSLNKCFEKVEN--KSGSSSR-KGCLWALNPAKIDKMQEELQKWKRKDPIA
           320       330         340        350       360       370

          300       310                                            
pF1KB9 IQECMSQPELLTSLFDL                                           
       ... :..:: : ::                                              
NP_003 VRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPLHSLHPAP
              380       390       400       410       420       430




311 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:26:59 2016 done: Fri Nov  4 19:27:00 2016
 Total Scan time:  8.430 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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