GENSCAN 1.0	Date run:  4-Nov-116	Time: 19:11:26

Sequence gi568815586f:5394215_5594985 : 200771 bp : 44.61% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -    105    100    6                               1.05
 1.06 Term -  37071  36956  116  1  2   93   39    82 0.686   2.53
 1.05 Intr -  37325  37231   95  1  2   84   75    94 0.769   7.31
 1.04 Intr -  38149  37938  212  1  2   45   62   155 0.784   6.31
 1.03 Intr -  39094  38825  270  1  0   36   73   192 0.357  10.24
 1.02 Intr -  52744  52643  102  1  0   77   63    79 0.347   4.67
 1.01 Init -  57843  57826   18  0  0   76   98     5 0.150   0.34
 1.00 Prom -  58307  58268   40                              -2.86

 2.03 PlyA -  59276  59271    6                               1.05
 2.02 Term -  61175  61064  112  1  1   73   39   140 0.835   5.63
 2.01 Init -  67434  67382   53  0  2   70   79    39 0.217   1.86
 2.00 Prom -  72484  72445   40                              -1.76

 3.00 Prom +  84211  84250   40                              -1.36
 3.01 Sngl +  91713  92045  333  2  0   91   44   148 0.640   6.73
 3.02 PlyA +  94193  94198    6                               1.05

 4.00 Prom +  94393  94432   40                              -4.66
 4.01 Init +  96591  96706  116  2  2  109   69    88 0.945   8.68
 4.02 Intr +  99253  99370  118  1  1   29   14   101 0.633  -2.73
 4.03 Term +  99980 100774  795  1  0  128   38   829 0.908  75.18
 4.04 PlyA + 100922 100927    6                               1.05

 5.15 PlyA - 101545 101540    6                               1.05
 5.14 Term - 116150 116047  104  0  2  124   43    91 0.695   6.64
 5.13 Intr - 124715 124592  124  2  1   39   48   107 0.429   1.96
 5.12 Intr - 126742 126582  161  2  2   98   52    78 0.508   4.91
 5.11 Intr - 140543 140498   46  2  1  120   39    29 0.086  -0.82
 5.10 Intr - 148089 148004   86  1  2   59   85    82 0.559   4.54
 5.09 Intr - 151813 151716   98  0  2   21  116    48 0.049   0.55
 5.08 Intr - 154188 154075  114  2  0   69   81    34 0.014   0.36
 5.07 Intr - 160377 160299   79  1  1   96   69    39 0.014   1.41
 5.06 Intr - 169354 169186  169  1  1  119   59   328 0.579  32.52
 5.05 Intr - 171449 171344  106  1  1   95  109    74 0.991  10.42
 5.04 Intr - 181801 181620  182  1  2  104  103   253 0.983  27.07
 5.03 Intr - 183793 183741   53  2  2  107  111    54 0.999   8.23
 5.02 Intr - 184304 184152  153  0  0   92   96   198 0.951  21.04
 5.01 Init - 184532 184478   55  2  1  100   80     5 0.935   2.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:5394215_5594985|GENSCAN_predicted_peptide_1|270_aa
MTGKCQIIVVSLPGLLSSATIRFSHQVGVAHSKHYVAKLHVSRPPTPPLKVREQAGRYRK
EIPWDGRARVPAAPRRGPRCAGCVRSSNICAKAQGGVATGWALAKRSPGREVFSEKTLSG
NSNAGTRRVAVPAASPYRGKSNHGIRVAVSRDVDMKRKVDASSVIQSLPHPAAATTQQGK
KERKKERREKKVVAPGCVAGRTNTPKDNRSPANSPLPGTRTQDAVSAVKGGQGWGPAANH
SPSTHQSARGDSARSRKGEQQTNLFVAPRK

>gi568815586f:5394215_5594985|GENSCAN_predicted_CDS_1|813_bp
atgactggaaaatgccagatcatagttgtctcactacctggcctgctctcttcggctacc
atccggttctcgcatcaggtcggcgtggctcattccaagcattatgttgctaaactacac
gtctcccggcctcccacgccaccgctcaaagtccgagaacaggctggacgataccgcaag
gagatcccctgggatggccgggcccgggtgcccgccgctccccggaggggtcccagatgt
gcgggctgcgtacggagctccaacatctgcgcaaaggcccagggtggggtggccaccggg
tgggcgctggccaagaggagcccggggcgcgaggtcttttctgaaaaaaccctttcgggg
aactccaacgcaggtacgcggcgcgtggcagtgcccgccgcctccccttaccgtggcaaa
agtaaccatggcatccgtgtggccgtttccagggacgtcgacatgaagagaaaggtggac
gcgagctcggtcattcaaagtctcccccaccccgccgcagccactacccagcaggggaaa
aaggagaggaagaaagaaaggagagagaagaaagtagttgcgccgggctgcgtcgcgggg
cgcacgaacacgcccaaggacaatcgctccccggcgaactccccgctcccggggacccgc
acccaggacgctgtgtcggcggtcaagggaggtcaaggatggggccctgcagctaatcac
tcgcccagcacccaccagtctgcacgcggggacagcgcgagaagcaggaaaggcgagcaa
caaacaaacctgttcgtggcgccccgaaagtaa

>gi568815586f:5394215_5594985|GENSCAN_predicted_peptide_2|54_aa
MKNEVKERQVYEDMAGGCSQHLTQAVMGYAQEAWHKPPRADNDRRQMYAIVKEY

>gi568815586f:5394215_5594985|GENSCAN_predicted_CDS_2|165_bp
atgaagaatgaagtcaaggagaggcaggtgtatgaggacatggcgggagggtgctcacaa
cacctaacccaggcagtcatgggttacgctcaagaagcttggcataagcctcccagagct
gacaacgatcgaagacagatgtatgccatcgtcaaagaatactaa

>gi568815586f:5394215_5594985|GENSCAN_predicted_peptide_3|110_aa
MAATGNRGERHLEEQKTVPAVSLQTPWFSGEGIQTRPPINIAADRQSIYLILVKGGCLCG
SRETGGAIFDTSLLAKSKGVSLPSDHTFCSQVLWGPNQYGLSLSPTCCYG

>gi568815586f:5394215_5594985|GENSCAN_predicted_CDS_3|333_bp
atggcggccacagggaacagaggggagagacacctggaggagcaaaagacagtcccagct
gtcagtcttcagacaccatggttttctggagaagggatccagaccagaccgccaatcaat
atagccgcagaccgccagtcaatatacctcatccttgtgaaaggcggttgtctgtgtggc
agcagggagacaggaggggccatatttgacacaagcctgctggccaagtctaaaggagtc
agcctgccatctgaccacactttctgcagccaagtcctctgggggccaaatcagtatggt
ttgagtttatccccgacttgctgctatggttga

>gi568815586f:5394215_5594985|GENSCAN_predicted_peptide_4|342_aa
MASGGKPCGDRVGKDCCEPDVEEGALQTLGPSPVCVKGSAVAELRFVESVPGDGADQLVM
RMYQKARQSTLERRPSRGILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLI
IKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQ
QRRYNSPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSE
SLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNS
QCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT

>gi568815586f:5394215_5594985|GENSCAN_predicted_CDS_4|1029_bp
atggcatctgggggaaagccttgtggggaccgtgttggtaaagattgctgtgagccagat
gtagaggagggagctctccagactctgggtccctcgcccgtgtgcgtcaagggcagtgct
gtggcagagctgcgttttgtggagagcgtccccggggatggagcagatcagttggtgatg
cgtatgtatcagaaagctcggcagagcaccctggaacgtaggccctctcgcggaatctta
caggtgaacaaggtgatgtccatcttgttttatgtgatatttctcgcttatctccgtggc
atccaaggtaacaacatggatcaaaggagtttgccagaagactcgctcaattccctcatt
attaagctgatccaggcagatattttgaaaaacaagctctccaagcagatggtggacgtt
aaggaaaattaccagagcaccctgcccaaagctgaggctccccgagagccggagcgggga
gggcccgccaagtcagcattccagccggtgattgcaatggacaccgaactgctgcgacaa
cagagacgctacaactcaccgcgggtcctgctgagcgacagcacccccttggagcccccg
cccttgtatctcatggaggattacgtgggcagccccgtggtggcgaacagaacatcacgg
cggaaacggtacgcggagcataagagtcaccgaggggagtactcggtatgtgacagtgag
agtctgtgggtgaccgacaagtcatcggccatcgacattcggggacaccaggtcacggtg
ctgggggagatcaaaacgggcaactctcccgtcaaacaatatttttatgaaacgcgatgt
aaggaagccaggccggtcaaaaacggttgcaggggtattgatgataaacactggaactct
cagtgcaaaacatcccaaacctacgtccgagcactgacttcagagaacaataaactcgtg
ggctggcggtggatacggatagacacgtcctgtgtgtgtgccttgtcgagaaaaatcgga
agaacatga

>gi568815586f:5394215_5594985|GENSCAN_predicted_peptide_5|509_aa
MPNPELCSQVMALTNRPAVIQFGFVTLFVASFPLAPVFALLNNVIEVRLDAKKFVTELRR
PDAVRTKDIGIWFDILSGIGKFSVISNAFVIAITSDFIPRLVYQYSYSHNGTLHGFVNHT
LSFFNVSQLKEGTQPENSQFDQEVQFCRFKDYREPPWAPNPYEFSKQYWFILSARLAFVI
IFQNLVMFLSVLVDWMIPDIPTDISDQIKKEKSLLVDFFLKEEHEKLKLMDEPALRSPGD
TPVKFFSTYVDSRSTALFHVRYVKSRLGHSLLTHSLLFKLLPPTPCCFAWALAASEQSSH
SMERDQAVVLVLAPLLKATSGLPGSLCSSHPFIPGKDAEKALGKIQHPFMIKILSTIGIE
GTYLKAFGGPQMDIWLQGLKTLAASPWKTDHDLCEDTVPEAPACLRSSQFEEEPTAKHMD
LISCLQWNSLQTEKIYFPPFSICSVLPADPFGPHQQAPVPAGMQLVQPMQNASRRLSSYE
VLGPVQALERQRLNSHNSHVLLITFPLLY

>gi568815586f:5394215_5594985|GENSCAN_predicted_CDS_5|1530_bp
atgcctaatccagagctttgctcccaagtgatggcattgaccaacaggcctgcagtcatc
cagtttggttttgtcaccctcttcgtggcctcctttcccctggcacctgtgtttgccctc
ctcaacaacgtcattgaagtgcggctcgatgcaaagaagtttgttacagagctgagacgg
ccggatgctgtaagaaccaaagatatcggaatctggtttgacattctctctggaattggc
aagttctctgttatcagcaacgcttttgtcattgcgatcacctccgactttatcccccgc
ctggtgtaccagtactcctacagtcacaatgggactctgcacggctttgtcaaccacacc
ctctcctttttcaacgtcagccagctgaaggaggggacgcagccagaaaactcacagttt
gaccaggaggttcagttctgcaggtttaaggattaccgagagccgccatgggccccgaac
ccttatgagttttcgaaacagtactggtttattctgtccgcccgtctggcttttgtcata
atcttccagaacctcgtgatgttcctgagcgtcctcgtggactggatgattccagacatc
cccacggacatcagcgaccagatcaagaaagagaagagcttattagtggatttcttcctg
aaagaggagcatgagaagctcaagctgatggatgagccggctctgaggagcccaggagat
acccctgtaaagttcttctccacgtatgtggacagcagaagtacagcacttttccatgta
cgttatgtcaaaagcagactcggacacagccttctcacacattccctgctcttcaagctt
cttccaccaaccccctgctgctttgcctgggcactggcagcttcagagcagagctcccac
tcaatggaaagggatcaagcagtagtactggtgctggctcctctcctcaaggccacatca
gggctgcctggtagcctctgctccagtcatcccttcattccagggaaagatgcagaaaaa
gcacttggcaaaatccagcatccttttatgattaaaattctcagcacaatcggcatagaa
gggacatacctcaaggcgtttggtggccctcagatggacatatggcttcaaggactcaag
actcttgcagcctccccatggaaaacagaccatgacttatgtgaagacacagtccccgag
gcacctgcttgtctacgaagcagccagtttgaggaagaacctacagccaaacacatggac
cttataagctgtttgcagtggaattctctgcagactgagaagatctactttccacccttc
tccatctgctcggtgctgccggctgacccatttggaccacaccaacaggccccagtgccc
gctggcatgcaattggtccagcccatgcagaatgccagcaggagattgagcagttacgaa
gtgctaggccctgtacaagcacttgagcggcaacgactcaattcccacaactcccacgtg
ctgctcatcacttttcctctgctctactga