Result of FASTA (ccds) for pF1KB9786
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9786, 191 aa
  1>>>pF1KB9786 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2839+/-0.000825; mu= 14.2464+/- 0.050
 mean_var=84.3994+/-17.072, 0's: 0 Z-trim(109.8): 174  B-trim: 321 in 1/52
 Lambda= 0.139606
 statistics sampled from 10967 (11158) to 10967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS7748.1 RHOG gene_id:391|Hs108|chr11            ( 191) 1305 271.9 1.7e-73
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7            ( 192)  936 197.6 3.9e-51
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17          ( 192)  922 194.8 2.8e-50
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22          ( 192)  913 193.0 9.8e-50
CCDS221.1 CDC42 gene_id:998|Hs108|chr1             ( 191)  837 177.7 3.9e-45
CCDS222.1 CDC42 gene_id:998|Hs108|chr1             ( 191)  814 173.0 9.8e-44
CCDS2795.1 RHOA gene_id:387|Hs108|chr3             ( 193)  724 154.9 2.8e-38
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2          ( 205)  724 154.9 2.9e-38
CCDS854.1 RHOC gene_id:389|Hs108|chr1              ( 193)  713 152.7 1.3e-37
CCDS1699.1 RHOB gene_id:388|Hs108|chr2             ( 196)  674 144.8 3.1e-35
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14          ( 214)  669 143.9 6.6e-35
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1           ( 258)  635 137.1 8.7e-33
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15        ( 236)  627 135.4 2.5e-32
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11          ( 210)  614 132.8 1.4e-31
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12          ( 211)  595 128.9   2e-30
CCDS82775.1 RHOA gene_id:387|Hs108|chr3            ( 187)  569 123.7 6.9e-29
CCDS2190.1 RND3 gene_id:390|Hs108|chr2             ( 244)  565 123.0 1.5e-28
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17          ( 227)  532 116.3 1.4e-26
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7            ( 211)  512 112.2 2.2e-25
CCDS3458.1 RHOH gene_id:399|Hs108|chr4             ( 191)  479 105.5   2e-23
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12          ( 232)  467 103.2 1.2e-22
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8        ( 727)  341 78.3 1.2e-14
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8       ( 734)  341 78.3 1.3e-14
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8       ( 749)  341 78.3 1.3e-14
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10        ( 696)  338 77.6 1.8e-14
CCDS7698.1 HRAS gene_id:3265|Hs108|chr11           ( 189)  294 68.3 3.3e-12
CCDS7699.1 HRAS gene_id:3265|Hs108|chr11           ( 170)  285 66.4 1.1e-11
CCDS8703.1 KRAS gene_id:3845|Hs108|chr12           ( 189)  284 66.3 1.3e-11
CCDS8702.1 KRAS gene_id:3845|Hs108|chr12           ( 188)  279 65.3 2.6e-11


>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11                 (191 aa)
 initn: 1305 init1: 1305 opt: 1305  Z-score: 1433.1  bits: 271.9 E(32554): 1.7e-73
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
              130       140       150       160       170       180

              190 
pF1KB9 PIKRGRSCILL
       :::::::::::
CCDS77 PIKRGRSCILL
              190 

>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7                 (192 aa)
 initn: 918 init1: 918 opt: 936  Z-score: 1031.4  bits: 197.6 E(32554): 3.9e-51
Smith-Waterman score: 936; 71.9% identity (86.5% similar) in 192 aa overlap (1-191:1-192)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::.:::::::::::::::::: ::::::: ::::::::::::.  :::. :::.::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::.::::: ::::::.::.::::..:: :.:::: ::.::: ::::..::.::::: :::
CCDS53 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
        . ::...:::.  .:::  :: :.::.: ::.::::::: : :.: :: ::.:::: : 
CCDS53 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
              130       140       150       160       170       180

               190 
pF1KB9 PIK-RGRSCILL
       :.: : :.:.::
CCDS53 PVKKRKRKCLLL
              190  

>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17               (192 aa)
 initn: 947 init1: 909 opt: 922  Z-score: 1016.2  bits: 194.8 E(32554): 2.8e-50
Smith-Waterman score: 922; 69.8% identity (85.9% similar) in 192 aa overlap (1-191:1-192)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::.:::::::::::::::::: ::::::: ::::::::::::.  :::. :::.::::::
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
CCDS11 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
        . ::..::...  ::::  :: :.:..: .:.::::::: : :.: :: ::.:::: : 
CCDS11 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
              130       140       150       160       170       180

               190 
pF1KB9 PIKR-GRSCILL
       :.:. :..: ..
CCDS11 PVKKPGKKCTVF
              190  

>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22               (192 aa)
 initn: 941 init1: 900 opt: 913  Z-score: 1006.4  bits: 193.0 E(32554): 9.8e-50
Smith-Waterman score: 913; 71.4% identity (84.9% similar) in 192 aa overlap (1-191:1-192)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::.:::::::::::::::::: ::::::: ::::::::::::.  ::.. :::.::::::
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::.::::: ::::::.::.::::..:: :::::: :: ::: ::::..::.::::: :::
CCDS13 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
        . ::...:::.  ::::  :: ::::.: .:.::::::: : :.: :: ::.:::: : 
CCDS13 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
              130       140       150       160       170       180

               190 
pF1KB9 PIKRG-RSCILL
       : ..  :.: ::
CCDS13 PTRQQKRACSLL
              190  

>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1                  (191 aa)
 initn: 837 init1: 837 opt: 837  Z-score: 923.7  bits: 177.7 E(32554): 3.9e-45
Smith-Waterman score: 837; 60.7% identity (85.3% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::.:::::::::::::::::: :::: ::.::.:::::::..   . :.  .:.:.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
        .:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.: 
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
              130       140       150       160       170       180

              190 
pF1KB9 PIKRGRSCILL
         :..: :.::
CCDS22 EPKKSRRCVLL
              190 

>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1                  (191 aa)
 initn: 814 init1: 799 opt: 814  Z-score: 898.7  bits: 173.0 E(32554): 9.8e-44
Smith-Waterman score: 814; 59.2% identity (84.3% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
       ::.:::::::::::::::::: :::: ::.::.:::::::..   . :.  .:.:.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
       ::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
        .:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.: 
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
              130       140       150       160       170       180

              190 
pF1KB9 PIKRGRSCILL
         .  :.: ..
CCDS22 ETQPKRKCCIF
              190 

>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3                  (193 aa)
 initn: 727 init1: 693 opt: 724  Z-score: 800.6  bits: 154.9 E(32554): 2.8e-38
Smith-Waterman score: 724; 55.6% identity (78.1% similar) in 187 aa overlap (5-191:7-193)

                 10        20        30        40        50        
pF1KB9   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
             : :.::::: ::::::: .. . ::. :.::::.:: :.  :::. :.: ::::
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
       ::::.::::: ::::.:.:...:::: :: : ::. .:: ::: : ::.:::.:::.:::
CCDS27 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
       :: .  : :.: .. : :. :..:. .:..: :  :.::::  .:::.:::  :.::.:.
CCDS27 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ
              130       140       150       160       170       180

      180       190 
pF1KB9 PTPIKRGRSCILL
           :.  .:..:
CCDS27 ARRGKKKSGCLVL
              190   

>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2               (205 aa)
 initn: 748 init1: 714 opt: 724  Z-score: 800.3  bits: 154.9 E(32554): 2.9e-38
Smith-Waterman score: 724; 56.8% identity (81.1% similar) in 190 aa overlap (4-189:10-199)

                     10        20        30        40        50    
pF1KB9       MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLN
                .::::::::::::::::. :...:::.::.:::::.:... .: :.   :.
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB9 LWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVG
       :.::::::.::::: ::::.:.::.::::...: :..::...: ::. .. :.::.::.:
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB9 TKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVR
       :. ::: .: :: ::... . ::  .::: :::.: :  :.::::: : :.: :: ::. 
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
              130       140       150       160       170       180

             180        190     
pF1KB9 AVLNP---TPIKR-GRSCILL    
       :.:.:   :  :: :  ::      
CCDS33 AILTPKKHTVKKRIGSRCINCCLIT
              190       200     

>>CCDS854.1 RHOC gene_id:389|Hs108|chr1                   (193 aa)
 initn: 719 init1: 700 opt: 713  Z-score: 788.7  bits: 152.7 E(32554): 1.3e-37
Smith-Waterman score: 713; 56.1% identity (77.0% similar) in 187 aa overlap (5-191:7-193)

                 10        20        30        40        50        
pF1KB9   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
             : :.::::: ::::::: .. . ::. :.::::.:: :.  :::. :.: ::::
CCDS85 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
       ::::.::::: ::::.:.:...:::: :: : ::. .:: ::: : ::.:::.:::.:::
CCDS85 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
       :: .  : :.: .. : :.  ..:. .:..: :  ::::::  ..::.:::  :.:: :.
CCDS85 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
              130       140       150       160       170       180

      180       190 
pF1KB9 PTPIKRGRSCILL
           :: :.: .:
CCDS85 VRKNKRRRGCPIL
              190   

>>CCDS1699.1 RHOB gene_id:388|Hs108|chr2                  (196 aa)
 initn: 689 init1: 670 opt: 674  Z-score: 746.1  bits: 144.8 E(32554): 3.1e-35
Smith-Waterman score: 674; 56.6% identity (79.8% similar) in 173 aa overlap (5-177:7-179)

                 10        20        30        40        50        
pF1KB9   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
             : ::::::: ::::::: .. . ::. :.::::.:: :.  :::. :.: ::::
CCDS16 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB9 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
       ::::.::::: ::::.:.:...:::. :: : ::. .:: ::: : ::.:::.::..:::
CCDS16 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB9 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
       ::..  .  .: .. : :.  ..:.:.: .:.:  ::::::  ..::.:::  :.::.: 
CCDS16 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
              130       140       150       160       170       180

      180       190    
pF1KB9 PTPIKRGRSCILL   
                       
CCDS16 KRYGSQNGCINCCKVL
              190      




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:55:52 2016 done: Fri Nov  4 18:55:52 2016
 Total Scan time:  1.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com