Result of FASTA (omim) for pF1KB9785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9785, 189 aa
  1>>>pF1KB9785 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0446+/-0.000364; mu= 14.2530+/- 0.023
 mean_var=64.5102+/-12.234, 0's: 0 Z-trim(113.6): 20  B-trim: 0 in 0/51
 Lambda= 0.159683
 statistics sampled from 23024 (23041) to 23024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.27), width:  16
 Scan time:  5.590

The best scores are:                                      opt bits E(85289)
NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1251 296.7 1.5e-80
NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1246 295.5 3.4e-80
NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1064 253.6 1.4e-67
NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1037 247.4   1e-65
NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1033 246.4   2e-65
NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1001 239.1 3.3e-63
NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189)  995 237.7 8.5e-63
NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188)  994 237.5   1e-62
NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189)  985 235.4 4.2e-62
NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189)  985 235.4 4.2e-62
NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189)  958 229.2 3.1e-60
NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189)  939 224.8 6.5e-59
NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189)  917 219.7 2.2e-57
NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195)  667 162.1 4.9e-40
NP_795372 (OMIM: 615223) interferon epsilon precur ( 208)  383 96.7 2.6e-20
NP_002167 (OMIM: 147640) interferon beta precursor ( 187)  310 79.9 2.7e-15
NP_064509 (OMIM: 615326) interferon kappa precurso ( 207)  162 45.8 5.4e-05


>>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs  (189 aa)
 initn: 1251 init1: 1251 opt: 1251  Z-score: 1567.1  bits: 296.7 E(85289): 1.5e-80
Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       :::::::::
NP_076 LQERLRRKE
                

>>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs  (190 aa)
 initn: 1246 init1: 1246 opt: 1246  Z-score: 1560.8  bits: 295.5 E(85289): 3.4e-80
Smith-Waterman score: 1246; 99.5% identity (100.0% similar) in 189 aa overlap (1-189:2-190)

                10        20        30        40        50         
pF1KB9  MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
        :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB9 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB9 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
              130       140       150       160       170       180

     180         
pF1KB9 NLQERLRRKE
       ::::::::::
NP_008 NLQERLRRKE
              190

>>NP_002160 (OMIM: 147565) interferon alpha-5 precursor   (189 aa)
 initn: 1064 init1: 1064 opt: 1064  Z-score: 1334.3  bits: 253.6 E(85289): 1.4e-67
Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       :: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::::
NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       :::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       ::.:::  : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.:
NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       :::::::::
NP_002 LQERLRRKE
                

>>NP_066282 (OMIM: 147566) interferon alpha-6 precursor   (189 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1300.7  bits: 247.4 E(85289): 1e-65
Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       :: ::::::.:::::::::::: ::::.:::: .:::.:::::: :::  ::: ::::: 
NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::::
NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       ::::::  :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : :
NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       :::::::::
NP_066 LQERLRRKE
                

>>NP_002163 (OMIM: 147579) interferon alpha-14 precursor  (189 aa)
 initn: 1092 init1: 1033 opt: 1033  Z-score: 1295.7  bits: 246.4 E(85289): 2e-65
Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       :: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: 
NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       :::::::::::::: :::::::..:: ::::.::.::::::: ::.::  ::.::.::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.::  : :::::: ::::::::::.:::::: :::::::::::::::::::::.:::
NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       ::.:::::.
NP_002 LQKRLRRKD
                

>>NP_002166 (OMIM: 147584) interferon alpha-21 precursor  (189 aa)
 initn: 1001 init1: 1001 opt: 1001  Z-score: 1255.8  bits: 239.1 E(85289): 3.3e-63
Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::  :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::::
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       :::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.::  : ::::::.::::::::::.::::::::::::::::::::::::::.:::  
NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       .::::::::
NP_002 FQERLRRKE
                

>>NP_066546 (OMIM: 147564) interferon alpha-4 precursor   (189 aa)
 initn: 1010 init1: 995 opt: 995  Z-score: 1248.4  bits: 237.7 E(85289): 8.5e-63
Smith-Waterman score: 995; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::  :.:::...::: :: ::::::::.:::: :::.:.:::::.:::  ::: ::::::
NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       ::.:::::.::::: :::::::.::: ::::.:.::::::...::.:: :::::::::::
NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.::  : :::::: ::::::.:::.::::::::::::::::::::::::::::.:::
NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       ::.:::::.
NP_066 LQKRLRRKD
                

>>NP_000596 (OMIM: 147562) interferon alpha-2 precursor   (188 aa)
 initn: 992 init1: 650 opt: 994  Z-score: 1247.1  bits: 237.5 E(85289): 1e-62
Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::  ::::..:.:::::::::.:::::.:::: .:::::::::: :::  ::: ::::::
NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       :::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::::
NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.:   : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::::
NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
     120       130       140       150       160       170         

                
pF1KB9 LQERLRRKE
       ::: :: ::
NP_000 LQESLRSKE
     180        

>>NP_067091 (OMIM: 147583) interferon alpha-17 precursor  (189 aa)
 initn: 1005 init1: 985 opt: 985  Z-score: 1235.9  bits: 235.4 E(85289): 4.2e-62
Smith-Waterman score: 985; 78.8% identity (92.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::  :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::::
NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       .::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.::
NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.::  . :::::: ::::::.:::.::::::::::::::::::::::::::::.:::
NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       ::. ::::.
NP_067 LQKILRRKD
                

>>NP_002162 (OMIM: 147577) interferon alpha-10 precursor  (189 aa)
 initn: 1000 init1: 985 opt: 985  Z-score: 1235.9  bits: 235.4 E(85289): 4.2e-62
Smith-Waterman score: 985; 78.8% identity (91.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
       ::  :.:::...::: :: ::::::::.:::: :::.:.::.::.:::: ::: ::::: 
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
       .::::::::::::: :::::::.::: ::::.:.::::::...::.:: :::::::::::
NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
       :::.::  : :::::: ::::::.:::.:::::: :.:::::::::::::::::::.:::
NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB9 LQERLRRKE
       ::.:::::.
NP_002 LQKRLRRKD
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:54:54 2016 done: Fri Nov  4 18:54:55 2016
 Total Scan time:  5.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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