GENSCAN 1.0	Date run:  4-Nov-116	Time: 18:52:12

Sequence gi568815580f:41855292_42167513 : 312222 bp : 37.38% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -   3203   3198    6                               1.05
 1.03 Term -  10934  10381  554  0  2   58   49   389 0.751  25.49
 1.02 Intr -  11660  11496  165  0  0   32   44   122 0.542   1.21
 1.01 Init -  11789  11687  103  2  1   60   82   112 0.818   6.30
 1.00 Prom -  26764  26725   40                              -2.65

 2.04 PlyA -  26854  26849    6                               1.05
 2.03 Term -  32554  32534   21  1  0  116   48    24 0.049  -1.47
 2.02 Intr -  41150  41060   91  1  1   68   92    74 0.162   4.88
 2.01 Init -  58540  58443   98  1  2   58   31   114 0.011   2.53
 2.00 Prom -  62360  62321   40                              -3.85

 3.00 Prom +  70105  70144   40                              -3.05
 3.01 Init +  75407  75518  112  1  1   72   92    14 0.208   0.71
 3.02 Intr +  99966 100068  103  1  1   59   58   142 0.583   6.61
 3.03 Intr + 102279 102467  189  0  0   78  100   101 0.996   8.08
 3.04 Intr + 107198 107341  144  2  0   70  102    96 0.953   7.68
 3.05 Intr + 115036 115165  130  1  1  104   93    91 0.984  10.98
 3.06 Intr + 132482 132607  126  1  0   94   90    32 0.518   3.96
 3.07 Intr + 135168 135263   96  2  0   81   63    96 0.972   5.69
 3.08 Intr + 137979 138050   72  2  0   65  115    69 0.984   5.98
 3.09 Intr + 140599 140703  105  0  0   18   64   111 0.694   1.19
 3.10 Intr + 141347 141439   93  1  0   98   87    65 0.989   6.64
 3.11 Intr + 149065 149250  186  0  0   64   42   184 0.986  10.36
 3.12 Intr + 158151 158305  155  2  2  125   52   131 0.997  11.15
 3.13 Intr + 172152 172257  106  0  1   46   86   107 0.880   5.60
 3.14 Intr + 174034 174150  117  0  0   70  121   135 0.996  14.74
 3.15 Intr + 178535 178666  132  1  0   97   25    96 0.877   4.12
 3.16 Intr + 182401 182529  129  0  0   69   61    99 0.890   5.27
 3.17 Intr + 183490 183559   70  0  1   40  115    86 0.918   4.34
 3.18 Intr + 202592 202760  169  0  1   36  115   132 0.749   8.78
 3.19 Intr + 209449 209539   91  1  1  119   86    65 0.998   8.48
 3.20 Intr + 212097 212222  126  2  0   18  111   186 0.865  13.86
 3.21 Intr + 243342 243461  120  2  0   45   87   116 0.389   6.97
 3.22 Intr + 252573 252621   49  2  1   87   80    48 0.281   1.23
 3.23 Term + 258217 258338  122  2  2  120   44    72 0.636   3.66
 3.24 PlyA + 258848 258853    6                               1.05

 4.00 Prom + 260314 260353   40                              -5.45
 4.01 Sngl + 268441 268791  351  0  0   71   45   167 0.888   6.50
 4.02 PlyA + 269126 269131    6                               1.05

 5.03 PlyA - 270466 270461    6                               1.05
 5.02 Term - 285386 285255  132  2  0   57   42    78 0.223  -2.79
 5.01 Init - 286235 286152   84  2  0   85   68    64 0.242   4.97
 5.00 Prom - 292958 292919   40                              -1.35

 6.06 PlyA - 293031 293026    6                               1.05
 6.05 Term - 295083 294676  408  0  0    4   37   227 0.331   3.43
 6.04 Intr - 297938 297845   94  1  1   48   32    55 0.201  -5.05
 6.03 Intr - 299972 299864  109  0  1   82   93    95 0.221   7.82
 6.02 Intr - 309405 309316   90  1  0  119   41    62 0.153   3.65
 6.01 Init - 309973 309943   31  1  1   80   98    49 0.954   5.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_1|273_aa
MKPRTLAVSVTALKVARLESVPFDVQMCSEFLPSGVRLQTFAVSVTALKAARLELFVPPG
GLMVSLASGEKLQIFSVSVIAHKSSVDPKNSGAQLASLSGSRTGAAGGAACQSRAVHSYS
SALGWSMGLGAMEQGVVLVGEAPAAQEPMEWVEGSGMAGCRSRALPCGKAAKARREIEHS
AGEPALLENPVHPLQPLARVPSSSLPGAGRAGRLLRVWGPPSPCPPGTPAGLQALHAAPV
PARASPSTPPCKLREPAVALASPERGSHSAAVG

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_1|822_bp
atgaagccgcggaccctcgcggtgagtgttacagcccttaaggtggcgcgtctggagtct
gtcccttttgatgttcagatgtgttcggagtttcttccttctggagtgaggctgcagacc
ttcgctgtgagtgttacagctcttaaggcagcacgtctggagttgttcgttcctcctggt
gggctcatggtctcgctggcttcaggagagaagctgcagatcttctcggtgagtgttata
gctcataaaagcagtgtggacccaaagaactcaggagcccagctggcttcacttagtgga
tcccgcaccggggctgcaggtggagctgcctgccagtcccgcgccgtgcactcatactcc
tcagcccttgggtggtcgatgggactgggcgccatggagcagggggtggtgctagtcggg
gaggctccggccgcacaggagcccatggagtgggtggaaggctcaggcatggcgggctgc
aggtcccgagccctgccctgcgggaaggcagctaaggcccggcgagaaatcgagcacagc
gccggtgagccggcactgctggagaacccagtacatcctctgcagccgctggcccgggtg
ccaagttcctcactgcccggggccggcagggccggccggctgctccgagtgtggggcccg
ccaagcccatgcccacctggaactccagctggcctgcaagcgctgcacgcagcaccggtt
cccgctcgcgcctctccctccacgcctccctgcaagctgagggagccggctgtggccttg
gccagcccagaaaggggctcccatagtgcagcggtgggctga

>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_2|69_aa
MQQQAAILGADSSPRPDTNPASTLVLDSQAPELLLVLQHALLAVRGTCEIISEERRKDMK
MRETHKQLS

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_2|210_bp
atgcagcaacaagctgccatcctgggagcagacagcagccctcggccagacactaaccct
gcaagcaccttggtattagactcccaggctccagaattactcttggtcctgcagcatgct
ctactcgctgtgcgtgggacctgtgagataatcagtgaagagagacggaaggatatgaaa
atgagagagactcacaagcaactcagttaa

>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_3|913_aa
MAHIGLLGAHPVNQGSPKGGASSWAELVTSSCPLQIVVPAVGGTFADGAMGEAEKFHYIY
SCDLDINVQLKIGSLEGKREQKSYKAVLEDPMLKFSGLYQETCSDLYVTCQVFAEGKPLA
LPVRTSYKAFSTRWNWNEWLKLPVKYPDLPRNAQVALTIWDVYGPGKAVPVGGTTVSLFG
KYGMFRQGMHDLKVWPNVEADGSEPTKTPGRTSSTLSEDQMSRLAKMYIKIFVIVFILQL
TKAHRQGHMVKVDWLDRLTFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEK
DGDESSPILTSFELVKVPDPQMSMENLVESKHHKLARSLRSGPSDHDLKPNAATRDQLNI
IVSYPPTKQLTYEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQEAKQALELLGKWKPM
DVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYENFDDIKNGLEPT
KKDSQSSVSENVSNSGINSAEIDRYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKG
DKSVRVMRSLLAAQQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELI
PLPLEPQVKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQII
SLMDKLLRKENLDLKLTPYKVLATSTKHGKLFHIDFGYILGRDPKPLPPPMKLNKEMVEG
MGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKF
RLDLSDEEAVHYMQSLIDESVHALFAAVVEQIHKFAQKQLSDGTATRGHWIKGAAFLNIE
DTGTIGDGDDSVNAKGAILLAVSPLSQELRVKHDKETSAQVLRQLNQGYMGVDCCQSQLR
KKAKCVFDAILPS

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_3|2742_bp
atggcacacatagggctgctgggagctcaccctgtgaatcaagggtctcccaaaggaggg
gcatcctcgtgggctgaactggtcaccagtagttgtccactacagatagtggttcccgct
gtaggtggtacctttgcagacggtgcgatgggggaagcagagaagtttcactacatctat
agttgtgacctggatatcaacgtccagcttaagataggaagcttggaagggaagagagaa
caaaagagttataaagctgtcctggaagacccaatgttgaagttctcaggactatatcaa
gagacatgctctgatctttatgttacttgtcaagtttttgcagaagggaagcctttggcc
ttgccagtgagaacatcctacaaagcatttagtacaagatggaactggaatgaatggctg
aaactaccagtaaaataccctgacctgcccaggaatgcccaagtggccctcaccatatgg
gatgtgtatggtcccggaaaagcagtgcctgtaggaggaacaacggtttcgctctttgga
aaatacggcatgtttcgccaagggatgcatgacttgaaagtctggcctaatgtagaagca
gatggatcagaacccacaaaaactcctggcagaacaagtagcactctctcagaagatcag
atgagccgtcttgccaagatgtatattaaaattttcgtcattgtatttattctgcagctc
accaaagctcatcgacaaggacacatggtgaaagtagattggctggatagattgacattt
agagaaatagaaatgataaatgagagtgaaaaacgaagttctaatttcatgtacctgatg
gttgaatttcgatgtgtcaagtgtgatgataaggaatatggtattgtttattatgaaaag
gacggtgatgaatcatctccaattttaacaagttttgaattagtgaaagttcctgacccc
cagatgtctatggagaatttagttgagagcaaacaccacaagcttgcccggagtttaaga
agtggaccttctgaccacgatctgaaacccaatgctgccacgagagatcagttaaatatt
attgtgagttatccaccaaccaagcaacttacatatgaagaacaagatcttgtttggaag
tttagatattatcttacgaatcaagaaaaagccttgacaaaattcttgaaatgtgttaat
tgggatctacctcaagaggccaaacaggccttggaacttctgggaaaatggaagccgatg
gatgtagaggactccttggagctgttatcctctcattacaccaacccaactgtgaggcgt
tatgctgttgcccggttgcgacaggccgatgatgaggatttgttgatgtacctattacaa
ttggtccaggctctcaaatatgaaaattttgatgatataaagaatggattggaacctacc
aagaaggatagtcagagttcagtgtcagaaaatgtgtcaaattctggaataaattctgca
gaaatagataggtatgtgatagtggaatgtgaagatcaagatactcagcagagagatcca
aagacccatgagatgtacttgaacgtaatgagaagattcagccaagcattgttgaagggt
gataagtctgtcagagttatgcgttctttgctggctgcacaacagacatttgtagatcgg
ttggtgcatctaatgaaggcagtacaacgcgaaagtggaaatcgtaagaaaaagaatgag
agactacaggcattgcttggagataatgaaaagatgaatttgtcagatgtggaacttatc
ccgttgcctttagaaccccaagtgaaaattagaggaataattccggaaacagctacactg
tttaaaagtgcccttatgcctgcacagttgttttttaagacggaagatggaggcaaatat
ccagttatatttaagcatggagatgatttacgtcaagatcaacttattcttcaaatcatt
tcactcatggacaagctgttacggaaagaaaatctggacttgaaattgacaccttataag
gtgttagccaccagtacaaaacatggcaaactcttccacatagactttggatatattttg
ggtcgggatccaaagcctcttcctccaccaatgaagctgaataaagaaatggtagaagga
atggggggcacacagagtgagcagtaccaagagttccgtaaacagtgttacacggctttc
ctccacctgcgaaggtattctaatctgattttgaacttgttttccttgatggttgatgca
aacattccagatattgcacttgaaccagataaaactgtgaaaaaggttcaggataaattc
cgcttagacctgtcggatgaagaggctgtgcattacatgcagagtctgattgatgagagt
gtccatgctctttttgctgcagtggtggaacagattcacaagtttgcccagaagcagtta
agtgacgggacagctactagaggacattggataaagggagcagcttttttaaacatagaa
gataccggaaccataggtgatggtgatgattcagtaaatgcaaagggggctatcctgctg
gccgtgtctcctctctcccaagagctacgtgtaaaacatgataaagaaacttctgcccaa
gtgttaaggcagcttaaccagggttacatgggtgtagactgttgccaatctcaactacga
aaaaaagcaaagtgtgtctttgatgcaattttgccttcttga

>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_4|116_aa
MVLYRENSMISDQKLLKLISNFRKVSGYKINVQKSQAFLYTNSRQAESQIMKVLPFTTAT
MRINYLGIQLTREVNDLFKENYKPLLKETREDTNKWKNIPCSWIGRINYRENGHTA

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_4|351_bp
atggtcctatatcgagaaaactccatgatttcagaccaaaagcttcttaagctgataagc
aacttcagaaaagtctcaggatacaaaatcaatgtgcagaagtcacaagcattcctatac
accaatagcagacaagcagagagccaaatcatgaaagtactcccattcacaactgctaca
atgagaataaattacctaggaatacagctaacaagggaagtgaacgacctcttcaaggag
aactacaaaccactgctcaaggaaaccagagaggacacaaacaaatggaaaaatattcca
tgctcatggataggaagaattaattatcgtgaaaatggccatactgcatga

>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_5|71_aa
MVKAGLDRSICQSTNGRHKHQHQGRIQQACNRGGHNSTVYCEVLSTVLAVEVPILMQRRC
SNLWPKTKIHA

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_5|216_bp
atggtcaaggctggactggacaggtctatctgccagtccaccaatggcaggcacaagcac
cagcaccaagggagaatccagcaggcctgcaacaggggagggcacaattccactgtctac
tgtgaggtactttccacagttctggctgtggaggtgcctatcctgatgcagagaaggtgc
tctaatctctggcccaagactaaaattcatgcatag

>gi568815580f:41855292_42167513|GENSCAN_predicted_peptide_6|243_aa
MAARHSSEAYRQNLKEYEAEVGESEGRLRTDHIGPHSGLRELSAAYPWRGSGEGFQTEQC
HHVEQQQLGKEDCWHSLSMQIMTEDVHSLLKNLQNMPHELMKDDKYSKELEVLARAIRQE
KEIKGIQLGKEEVELSLFADDMIAYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFL
YTNNRQTESQIMSELSFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNETKEDTNKWKNI
PCS

>gi568815580f:41855292_42167513|GENSCAN_predicted_CDS_6|732_bp
atggcagctcggcattccagtgaagcatacaggcagaacttaaaggaatatgaagcagaa
gtgggagaaagtgaaggaagattgaggacagaccatattggaccccactctggtctccga
gagctgtcagctgcttatccctggagagggagtggagagggattccagactgaacaatgc
catcatgttgagcagcagcaattaggaaaagaagattgttggcattcactttcaatgcaa
ataatgactgaagacgtgcactctctactgaagaatttacaaaacatgccacatgaatta
atgaaagatgataagtacagcaaggagttagaagttctggccagggcaatcaggcaggag
aaggaaataaagggtattcaattaggaaaagaggaagttgaattgtccctgtttgcagat
gacatgattgcatatctagaaaaccccatcgtctcagcccaaaatctccttaagctaata
agcaacttcagcaaagtctcaggatataaaatcaacgtgcaaaaatcacaagcattctta
tacaccaataacagacaaactgagagccaaatcatgagtgaactctcattcacaattgct
tcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaag
gagaactacaaaccactgctcaatgaaacaaaagaggacacaaacaaatggaagaacatt
ccatgctcatag