Result of FASTA (omim) for pF1KB9769
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9769, 1047 aa
  1>>>pF1KB9769 1047 - 1047 aa - 1047 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4370+/-0.00052; mu= 9.0235+/- 0.033
 mean_var=251.3526+/-51.990, 0's: 0 Z-trim(114.7): 25  B-trim: 243 in 1/54
 Lambda= 0.080897
 statistics sampled from 24733 (24747) to 24733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.29), width:  16
 Scan time: 14.330

The best scores are:                                      opt bits E(85289)
NP_009123 (OMIM: 605012) FACT complex subunit SPT1 (1047) 6822 811.0       0
XP_011534683 (OMIM: 605012) PREDICTED: FACT comple ( 982) 6404 762.2       0


>>NP_009123 (OMIM: 605012) FACT complex subunit SPT16 [H  (1047 aa)
 initn: 6822 init1: 6822 opt: 6822  Z-score: 4319.9  bits: 811.0 E(85289):    0
Smith-Waterman score: 6822; 100.0% identity (100.0% similar) in 1047 aa overlap (1-1047:1-1047)

               10        20        30        40        50        60
pF1KB9 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
              970       980       990      1000      1010      1020

             1030      1040       
pF1KB9 KASVHSSGRGSNRGSRHSSAPPKKKRK
       :::::::::::::::::::::::::::
NP_009 KASVHSSGRGSNRGSRHSSAPPKKKRK
             1030      1040       

>>XP_011534683 (OMIM: 605012) PREDICTED: FACT complex su  (982 aa)
 initn: 6404 init1: 6404 opt: 6404  Z-score: 4056.6  bits: 762.2 E(85289):    0
Smith-Waterman score: 6404; 100.0% identity (100.0% similar) in 982 aa overlap (66-1047:1-982)

          40        50        60        70        80        90     
pF1KB9 VSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNE
                                     ::::::::::::::::::::::::::::::
XP_011                               MVFCDDKIIFMASKKKVEFLKQIANTKGNE
                                             10        20        30

         100       110       120       130       140       150     
pF1KB9 NANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLN
               40        50        60        70        80        90

         160       170       180       190       200       210     
pF1KB9 KEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHS
              100       110       120       130       140       150

         220       230       240       250       260       270     
pF1KB9 KLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAM
              160       170       180       190       200       210

         280       290       300       310       320       330     
pF1KB9 GIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKK
              220       230       240       250       260       270

         340       350       360       370       380       390     
pF1KB9 QKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPE
              280       290       300       310       320       330

         400       410       420       430       440       450     
pF1KB9 EKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGS
              340       350       360       370       380       390

         460       470       480       490       500       510     
pF1KB9 RAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNP
              400       410       420       430       440       450

         520       530       540       550       560       570     
pF1KB9 SLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCP
              460       470       480       490       500       510

         580       590       600       610       620       630     
pF1KB9 GSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTR
              520       530       540       550       560       570

         640       650       660       670       680       690     
pF1KB9 EAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGD
              580       590       600       610       620       630

         700       710       720       730       740       750     
pF1KB9 KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQ
              640       650       660       670       680       690

         760       770       780       790       800       810     
pF1KB9 HMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTC
              700       710       720       730       740       750

         820       830       840       850       860       870     
pF1KB9 LLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIP
              760       770       780       790       800       810

         880       890       900       910       920       930     
pF1KB9 VASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAE
              820       830       840       850       860       870

         940       950       960       970       980       990     
pF1KB9 EGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEE
              880       890       900       910       920       930

        1000      1010      1020      1030      1040       
pF1KB9 EARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK
              940       950       960       970       980  




1047 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:46:42 2016 done: Fri Nov  4 18:46:44 2016
 Total Scan time: 14.330 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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