GENSCAN 1.0	Date run:  4-Nov-116	Time: 18:39:08

Sequence gi568815581r:57874476_58083395 : 208920 bp : 46.79% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 Intr -    206     92  115  2  1   67   54    72 0.018   1.72
 1.07 Intr -   2189   2108   82  1  1   22   89    53 0.027  -1.56
 1.06 Intr -   5263   5136  128  1  2   68   97   128 0.104  11.18
 1.05 Intr -  11101  10754  348  1  0   -5   75   711 0.569  56.05
 1.04 Intr -  11404  11267  138  1  0  143  -13   131 0.705   9.16
 1.03 Intr -  14909  14832   78  2  0   76   48    61 0.395   0.65
 1.02 Intr -  16199  16096  104  0  2   55   64    59 0.324   0.09
 1.01 Init -  16805  16622  184  2  1   90   21   115 0.301   4.28
 1.00 Prom -  21897  21858   40                              -4.36

 2.00 Prom +  26286  26325   40                              -6.56
 2.01 Init +  28806  28878   73  2  1   88   96    47 0.283   4.98
 2.02 Intr +  37567  37761  195  2  0   64   77    93 0.551   5.19
 2.03 Intr +  39003  39083   81  1  0   28  108    54 0.538   1.01
 2.04 Term +  39210  39274   65  1  2   73   37    58 0.630  -2.75
 2.05 PlyA +  40399  40404    6                               1.05

 3.00 Prom +  43944  43983   40                              -1.56
 3.01 Init +  45105  45157   53  2  2   88   92    36 0.926   4.63
 3.02 Intr +  51750  51860  111  0  0   45   86    84 0.303   3.39
 3.03 Intr +  59502  59549   48  0  0   93   81    27 0.034   0.30
 3.04 Intr +  66018  66133  116  0  2  102   -7    91 0.054   1.09
 3.05 Intr +  79370  79572  203  0  2   87   81    42 0.875   2.40
 3.06 Intr +  79695  79766   72  2  0   76   75    95 0.944   6.60
 3.07 Intr +  82918  82998   81  0  0   99   76     6 0.527   0.33
 3.08 Term +  85470  85691  222  2  0   65   44   145 0.906   4.72
 3.09 PlyA +  86203  86208    6                               1.05

 4.07 PlyA -  87124  87119    6                               1.05
 4.06 Term -  88357  88293   65  2  2   93   47    50 0.619  -0.55
 4.05 Intr -  90953  90846  108  0  0   49   94    68 0.448   3.76
 4.04 Intr - 104838 104677  162  1  0   46  116   198 0.986  18.35
 4.03 Intr - 106311 106128  184  0  1   69   56    74 0.907   1.66
 4.02 Intr - 108918 108292  627  0  0   60   56   485 0.900  34.91
 4.01 Init - 113636 113604   33  2  0  112   84    43 0.006   5.44
 4.00 Prom - 114905 114866   40                              -4.66

 5.00 Prom + 127267 127306   40                              -0.96
 5.01 Sngl + 130900 131103  204  0  0   79   40   320 0.978  21.49
 5.02 PlyA + 131193 131198    6                              -3.74

 6.04 PlyA - 131231 131226    6                              -5.80
 6.03 Term - 131498 131272  227  0  2   26   42   132 0.234  -0.66
 6.02 Intr - 132052 131868  185  0  2   86  105   188 0.710  19.73
 6.01 Init - 132662 132469  194  2  2   92   77   408 0.975  38.54
 6.00 Prom - 163697 163658   40                              -0.56

 7.07 PlyA - 168964 168959    6                               1.05
 7.06 Term - 173513 173403  111  2  0  108   50    59 0.749   2.66
 7.05 Intr - 178910 178734  177  2  0   22   81    95 0.368   2.32
 7.04 Intr - 183289 183205   85  0  1   57   70    28 0.074  -2.28
 7.03 Intr - 185083 184985   99  0  0  119   99    14 0.407   4.83
 7.02 Intr - 186329 186148  182  2  2  113   81    39 0.418   4.37
 7.01 Intr - 193412 193293  120  2  0  128   90     6 0.752   5.49

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   5263   5132  132  1  0   68   54   134 0.891   6.09
S.002 Init +  78032  78080   49  1  1   72   95    28 0.834   3.10
S.003 Init - 110784 110779    6  0  0   68   92     5 0.969  -0.44


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_1|393_aa
MEKAGEKQVGVGGNHRSDGSMLLELLLDVQVEAARRLYECGVEGSAHERLEHMRASVQYA
DGEEVGCLPPLPGLDSFTGEVEGHCDPGFLGPGGGQRAERIPGIDIQVLGKTPLESPYPI
PPVGPSVKPVPGCTGGVDDRPPSPSTARSRMPPPREDRSPRAAWGPAPRLRKMTSLFRRS
SSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYDIIEC
VLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPP
PVYSPPAYHMHVFDRPYPLAPPTPPPRPSIQDIHFQHLLIACHTQVLSHVYDEVCAVFLI
QRNTCPAVATLQAAMELWGPPGRAPSCPQAQGX

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_1|1179_bp
atggagaaggcaggggagaagcaggttggggtcggagggaatcacaggtcggatggatcc
atgttgttggagctgctgttggatgtccaagtggaggcagcaagaaggctgtatgagtgt
ggagttgaggggagtgcccatgagaggttggagcacatgagagccagtgttcagtatgca
gatggagaggaggttggctgtttgccgcccctgccgggcctggattccttcacaggggag
gtggagggccactgtgatcctggcttcctgggacctggaggaggacagagggctgaaaga
attccagggattgacatccaggtgctggggaagacccccctagaatctccctaccccatc
ccccctgtgggaccatccgtgaaaccggtgccaggatgcaccgggggtgtggatgaccgg
ccgcccagccccagcacggcccggtcccgcatgccaccgccccgcgaggaccgctctcca
agggctgcctggggccccgcgccccggctccgcaaaatgaccagcctgttccgccggagc
agcagcggcagcggcgggggtggcaccgccggggcacgcgggggcgggggaggcacggcc
gccccccaggagctcaacaacagccggcctgcccgccaggtgcgccgcctggagttcaac
caggccatggacgacttcaagaccatgttccccaacatggattacgacatcatcgaatgc
gtgctgcgcgccaacagcggcgctgtggacgccaccatcgaccagctgctgcagatgaac
ctggagggcggtggcagcagcggcggcgtctatgaggacagctccgactcggaggacagc
atccccccggagatcttggaaaggactttggaacctgatagctcggatgaagagccccca
cctgtgtactccccgccagcctaccacatgcacgtgttcgaccggccctaccctctggct
cccccgactccgcctccccgtccctccatccaggacattcatttccagcatttactgatt
gcctgccatacgcaggtgctgagccatgtgtatgatgaggtgtgtgccgttttcctgatt
cagcggaacacgtgtcctgcggttgccacgctgcaggctgccatggagctgtggggacct
cctggccgggctccgagctgccctcaggcccagggcgnn

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_2|137_aa
MASLSWSGFSSSCISMAATMGSSQEAKNYNSMNGRSLQKVLCEDPSQPQPNAPTPGPGDR
YTHTTLAPVAGAGACQQAHTVAVTPSCNHEKGPCVFVNSTESEFPEVHPNPIPKIPRISS
EEISSFSSELTSPPGTC

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_2|414_bp
atggcctccctgtcctggtctgggttctcctcgagttgtatttccatggcagccacaatg
ggcagcagccaggaggccaagaattacaacagcatgaatggcagaagcctacagaaggtg
ctctgtgaggatccctcccaaccgcagcccaacgcccccacccctggccctggagaccgc
tacacacacacaaccttggccccagttgcaggtgctggtgcctgccaacaagcacacaca
gttgcagtcacaccctcgtgtaaccatgaaaaaggcccatgtgtctttgtcaattctact
gaatcagaatttcctgaggtgcacccaaaccccatccccaagatcccaaggatttctagc
gaggaaatatcatccttctcgtctgaactgaccagtcctccagggacctgctga

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_3|301_aa
MIKGLSSHTDKPTKPCTYKELKFTITKGASAWPPAAGILLRHWRGPKKAHTKPKRQGKEE
CSVKKEYLKPSNLEGPIFQMMWLQMEVHCLTYKTFHEQKINLDGVKPLGSAESGQRVSHP
ALLHTLQLPGDPSQVSPSSTSPSQRWHHIQTEVPVALTPNNREDPASHLIQQGPNHMVAQ
VLRDHPGKAHSSRYKTLTADQTPPPTPTTASEPPGLQPLTPAAYRGPPTECEGDGSLLLS
LWLYEAQIAGAYGIIYCENEADGEPLGSGLEMVSSDRTVGKTGHFPSEGPPAQGKCQGMN
G

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_3|906_bp
atgatcaaaggcttaagctcccacaccgacaaacccactaagccatgcacatacaaggag
ctcaagttcaccatcaccaaaggtgcctctgcatggcctcctgctgctggcattttgctg
agacactggagaggaccgaaaaaggcccacaccaagccaaaaagacaaggcaaagaggaa
tgcagtgtcaagaaagaatatttaaagccaagtaaccttgaaggccctatattccagatg
atgtggctacagatggaggtgcactgcctgacctacaagactttccacgagcaaaaaata
aacctagatggtgtcaagcccctgggatctgcagaaagtggacagcgggtttcacaccca
gccctgctgcacacgctccagcttcctggagacccgagccaggtttctcccagcagcacc
tctccatcccagagatggcaccatattcaaactgaggtaccagtggcactgacccccaac
aacagagaggacccagcttcacacttgatccagcaggggcccaaccacatggtggctcag
gtgctgcgggatcacccagggaaggctcattcctctcgctacaagacgctgactgcggat
cagacacctccacccactcccaccactgcctctgagcccccagggctccagcccctcaca
ccagccgcctacagagggccacctactgaatgtgaaggtgatggaagccttttgctaagt
ctgtggctgtatgaagctcagatcgctggagcatatggcattatctactgtgagaatgag
gctgatggagagccactgggctcaggcttggaaatggtgagctctgatcggaccgtgggg
aaaacaggacatttcccttctgaaggtcccccagcccagggcaaatgccagggcatgaat
ggttga

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_4|392_aa
MEANWTAFLFQAHEASHHQQQAAQNSLLPLLSSAVEPPDQKPLLPIPITQKPQGAPETLK
DAIGIKKEKPKTSFVCTYCSKAFRDSYHLRRHESCHTGIKLVSRPKKTPTTVVPLISTIA
GDSSRTSLVSTIAGILSTVTTSSSGTNPSSSASTTAMPVTQSVKKPSKPVKKNHACEMCG
KAFRDVYHLNRHKLSHSDEKPFECPICNQRFKRKDRMTYHTCTAAFATKDRLRTHMVRHE
GKVSCNICGKLLSAAYITSHLKTHGQSQSINCNTCKQGISKTCMSEETSNQKQQQQQQQQ
QQQQQQQQQQHVTSWPGKQVETLRLWEEAVKARKKGMAESVRLLYRISKSQLYESMGPGL
WELWGLRFAYPVGDVPLYATISCCASQPATIM

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_4|1179_bp
atggaggccaactggaccgcgttcctgttccaggcccatgaagcttcccatcaccaacag
caggcagcacagaacagcttgctgcccctcctgagctctgccgtggagccccctgatcag
aaaccattgcttccaataccaataactcagaaacctcagggtgcaccagaaacattaaag
gatgccattgggattaaaaaagaaaaacccaaaacttcatttgtgtgcacttactgcagt
aaagctttcagggacagctatcacctgaggcgccacgaatcctgccacacagggatcaag
ttggtgtcccggccaaagaaaacccccaccacggtggttccccttatctctaccatcgct
ggggacagcagccgaacttcgttggtctcgaccattgcaggcatcttgtcaacagtcact
acatcttcctcgggcaccaaccccagtagcagtgccagcaccacagctatgccagtgacc
cagtctgtcaagaaacccagtaagcctgtcaagaagaaccatgcttgtgagatgtgtggg
aaggccttccgagatgtgtaccatctcaatcgacacaagctctcccattcagatgagaaa
ccctttgagtgtcctatttgtaatcagcgcttcaagaggaaggaccggatgacttaccat
acgtgcactgctgcctttgccaccaaagacagactgcggacacacatggtgcgccatgaa
ggcaaggtatcatgtaacatctgtgggaagctcctgagtgcagcatacatcaccagccac
ttaaagactcatgggcagagccaaagtatcaactgtaatacatgtaaacaaggcatcagt
aaaacatgcatgagtgaagagaccagtaaccaaaagcagcagcagcagcagcagcagcag
cagcagcagcagcaacaacaacaacaacaacatgtgacaagctggccagggaagcaagta
gaaacactgagactgtgggaagaagctgttaaagcaaggaagaaagggatggctgaatct
gtccgtttattgtatcgcatatccaaatcacagctgtacgagtcaatgggaccaggctta
tgggaactgtgggggctgcgttttgcatacccagtgggagatgtgcccctctatgctacc
atctcctgctgtgcttctcaacctgccacgataatgtga

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_5|67_aa
MGSTKSVTNHLMYESEICYDGENSVVILCFSLGSNCDSCCCFCYGFCYDYGFEIEIFHNL
DFWAHQL

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_5|204_bp
atgggttctacaaaaagtgtcaccaatcatcttatgtacgagagcgagatctgctatgac
ggggagaatagcgtggtgatcctctgcttctccttggggagtaactgcgactcctgctgt
tgcttctgctacggcttctgctacgactacggcttcgagatcgagatcttccataacttg
gacttctgggcccatcaactttaa

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_6|201_aa
MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
RSHEVGYTRILFFDQNWIQWS

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_6|606_bp
atgtcgggaggtggtgtgattcgtggccccgcagggaacaacgattgccgcatctacgtg
ggtaacttacctccagacatccgaaccaaggacattgaggacgtgttctacaaatacggc
gctatccgcgacatcgacctcaagaatcgccgcgggggaccgcccttcgccttcgttgag
ttcgaggacccgcgagacgcggaagacgcggtgtatggtcgcgacggctatgattacgat
gggtaccgtctgcgggtggagtttcctcgaagcggccgtggaacaggccgaggcggcggc
gggggtggaggtggcggagctccccgaggtcgctatggccccccatccaggcggtctgaa
aacagagtggttgtctctggactgcctccaagtggaagttggcaggatttaaaggatcac
atgcgtgaagcaggtgatgtatgttatgctgatgtttaccgagatggcactggtgtcgtg
gagtttgtacggaaagaagatatgacctatgcagttcgaaaactggataacactaagttt
agatctcatgaggtaggttatacacgtattcttttctttgaccagaattggatacagtgg
tcttaa

>gi568815581r:57874476_58083395|GENSCAN_predicted_peptide_7|257_aa
EGQTALALLPGKHPGVYPTFSARAILRILAGDEHLKSGVECTVALFSCQLGSSSLLLLST
PPREKGEESALIAWRTVQQIHVRASLGMSPKLPRLLVRRKRSLSPRCETDPKTPCNFLLK
ISTKKHSHSHSSSWSSRTSGKEHLPTWIWQPKPSKPPEHHVQYADGNDPVEMENLMLQMR
EWIIAGVMLFNKQEKKGSSVREEGLASDRHMDDSFIMRGGKQNEDQMFSGVAPSSSFIRS
TNMHHAIMLYCSGQSFC

>gi568815581r:57874476_58083395|GENSCAN_predicted_CDS_7|774_bp
gaaggacaaacagcactggctctcctcccaggaaagcaccctggcgtttaccccacattt
tcagcaagagccatattgaggattcttgctggagatgagcatcttaagagtggggtggag
tgcacagtcgctctgttctcctgccaacttggcagctcatcgctgctgttactatcaaca
cctccaagggaaaagggagaggagtcagctctgatcgcctggcgcactgtgcagcaaatt
catgtcagagccagccttggaatgtctcccaagctcccaaggctcctggtgaggaggaaa
aggagcctttctcccagatgtgaaactgatcctaagaccccctgtaatttcctgctgaaa
atctccaccaagaaacacagccacagccacagttcttcctggagttcaagaacctcaggc
aaagaacacctgcccacatggatctggcagcccaagccctctaagcccccagagcatcat
gttcaatatgctgatgggaatgatccagttgagatggaaaatttgatgctgcagatgaga
gagtggataattgctggagtgatgctttttaacaagcaagagaagaagggatccagtgtg
cgagaggaggggctggcctcagacagacacatggacgattcattcatcatgagaggagga
aagcaaaatgaggaccagatgttctctggtgttgctcccagctcttcattcattcgctcc
acaaatatgcaccatgctatcatgctctactgctctgggcagtcattctgctag