Result of FASTA (omim) for pF1KB9716
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9716, 393 aa
  1>>>pF1KB9716 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7942+/-0.000349; mu= 1.4393+/- 0.022
 mean_var=182.5098+/-37.504, 0's: 0 Z-trim(120.2): 68  B-trim: 0 in 0/55
 Lambda= 0.094936
 statistics sampled from 35058 (35127) to 35058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.412), width:  16
 Scan time:  8.420

The best scores are:                                      opt bits E(85289)
XP_016871777 (OMIM: 120330,167409,191830,616002) P ( 424) 2663 376.7 5.6e-104
NP_000269 (OMIM: 120330,167409,191830,616002) pair ( 394) 2641 373.7 4.3e-103
NP_001291498 (OMIM: 120330,167409,191830,616002) p ( 425) 2641 373.7 4.6e-103
NP_003980 (OMIM: 120330,167409,191830,616002) pair ( 409) 2488 352.7   9e-97
XP_016871775 (OMIM: 120330,167409,191830,616002) P ( 440) 2488 352.7 9.6e-97
NP_003979 (OMIM: 120330,167409,191830,616002) pair ( 396) 2278 324.0   4e-88
XP_016871776 (OMIM: 120330,167409,191830,616002) P ( 427) 2278 324.0 4.2e-88
XP_005251538 (OMIM: 167414,615545) PREDICTED: pair ( 390) 1934 276.8   6e-74
NP_057953 (OMIM: 167414,615545) paired box protein ( 391) 1848 265.1 2.1e-70
XP_011510096 (OMIM: 167415,218700) PREDICTED: pair ( 387) 1657 238.9 1.6e-62
XP_011510095 (OMIM: 167415,218700) PREDICTED: pair ( 444) 1646 237.4   5e-62
NP_001267477 (OMIM: 167414,615545) paired box prot ( 362) 1552 224.5 3.2e-58
NP_003978 (OMIM: 120330,167409,191830,616002) pair ( 417) 1399 203.6 7.3e-52
XP_016871774 (OMIM: 120330,167409,191830,616002) P ( 448) 1399 203.6 7.7e-52
NP_003981 (OMIM: 120330,167409,191830,616002) pair ( 432) 1394 202.9 1.2e-51
XP_016871773 (OMIM: 120330,167409,191830,616002) P ( 463) 1394 202.9 1.3e-51
NP_001267476 (OMIM: 167414,615545) paired box prot ( 357) 1352 197.1 5.5e-50
NP_001267481 (OMIM: 167414,615545) paired box prot ( 328) 1338 195.2 1.9e-49
XP_011516199 (OMIM: 167414,615545) PREDICTED: pair ( 409) 1332 194.4 4.1e-49
NP_039246 (OMIM: 167415,218700) paired box protein ( 398) 1287 188.2 2.9e-47
XP_016860368 (OMIM: 167415,218700) PREDICTED: pair ( 402) 1283 187.7 4.3e-47
XP_011510094 (OMIM: 167415,218700) PREDICTED: pair ( 455) 1276 186.8 9.2e-47
XP_016860367 (OMIM: 167415,218700) PREDICTED: pair ( 459) 1272 186.2 1.4e-46
NP_003457 (OMIM: 167415,218700) paired box protein ( 450) 1267 185.5 2.1e-46
XP_011510093 (OMIM: 167415,218700) PREDICTED: pair ( 500) 1256 184.0 6.6e-46
XP_011510092 (OMIM: 167415,218700) PREDICTED: pair ( 507) 1256 184.0 6.7e-46
XP_011516198 (OMIM: 167414,615545) PREDICTED: pair ( 410) 1246 182.6 1.5e-45
NP_001267478 (OMIM: 167414,615545) paired box prot ( 324) 1228 180.1 6.6e-45
NP_001267485 (OMIM: 167414,615545) paired box prot ( 283) 1225 179.7 7.8e-45
NP_001267479 (OMIM: 167414,615545) paired box prot ( 295) 1214 178.2 2.3e-44
NP_039247 (OMIM: 167415,218700) paired box protein ( 321) 1186 174.3 3.5e-43
NP_054698 (OMIM: 167415,218700) paired box protein ( 287) 1166 171.6 2.1e-42
XP_016871770 (OMIM: 120330,167409,191830,616002) P ( 496) 1115 164.7 4.3e-40
XP_016871778 (OMIM: 120330,167409,191830,616002) P ( 374)  923 138.4 2.8e-32
XP_016871771 (OMIM: 120330,167409,191830,616002) P ( 483)  905 136.0 1.9e-31
XP_016871772 (OMIM: 120330,167409,191830,616002) P ( 483)  905 136.0 1.9e-31
NP_001267482 (OMIM: 167414,615545) paired box prot ( 319)  875 131.8 2.3e-30
NP_001267483 (OMIM: 167414,615545) paired box prot ( 348)  875 131.8 2.5e-30
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  780 118.8 2.3e-26
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  780 118.8 2.4e-26
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  780 118.8 2.4e-26
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  780 118.8 2.4e-26
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  780 118.8 2.4e-26
NP_006183 (OMIM: 167411,615560) paired box protein ( 534)  723 111.1 6.6e-24
NP_001267480 (OMIM: 167414,615545) paired box prot ( 220)  715 109.7 6.8e-24
NP_001244025 (OMIM: 167411,615560) paired box prot ( 457)  700 107.9 5.2e-23
NP_006185 (OMIM: 167416,604625) paired box protein ( 341)  669 103.6 7.7e-22
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  654 101.6 4.3e-21
NP_039230 (OMIM: 122880,148820,193500,268220,60659 ( 206)  642 99.7 6.6e-21
NP_000429 (OMIM: 122880,148820,193500,268220,60659 ( 215)  642 99.7 6.8e-21


>>XP_016871777 (OMIM: 120330,167409,191830,616002) PREDI  (424 aa)
 initn: 2663 init1: 2663 opt: 2663  Z-score: 1987.7  bits: 376.7 E(85289): 5.6e-104
Smith-Waterman score: 2663; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:32-424)

                                             10        20        30
pF1KB9                               MDMHCKADPFSAMHRHGGVNQLGGVFVNGR
                                     ::::::::::::::::::::::::::::::
XP_016 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCKADPFSAMHRHGGVNQLGGVFVNGR
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB9 PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVA
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB9 TPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPTP
             130       140       150       160       170       180 

              160       170       180       190       200       210
pF1KB9 DGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGS
             190       200       210       220       230       240 

              220       230       240       250       260       270
pF1KB9 VPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLP
             250       260       270       280       290       300 

              280       290       300       310       320       330
pF1KB9 ALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYP
             310       320       330       340       350       360 

              340       350       360       370       380       390
pF1KB9 TSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAY
             370       380       390       400       410       420 

          
pF1KB9 DRH
       :::
XP_016 DRH
          

>>NP_000269 (OMIM: 120330,167409,191830,616002) paired b  (394 aa)
 initn: 2642 init1: 2547 opt: 2641  Z-score: 1971.9  bits: 373.7 E(85289): 4.3e-103
Smith-Waterman score: 2641; 99.5% identity (99.5% similar) in 394 aa overlap (1-393:1-394)

               10         20        30        40        50         
pF1KB9 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
       ::::::::::::::  ::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB9 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB9 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB9 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB9 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA
              310       320       330       340       350       360

     360       370       380       390   
pF1KB9 WRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
       ::::::::::::::::::::::::::::::::::
NP_000 WRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
              370       380       390    

>>NP_001291498 (OMIM: 120330,167409,191830,616002) paire  (425 aa)
 initn: 2642 init1: 2547 opt: 2641  Z-score: 1971.4  bits: 373.7 E(85289): 4.6e-103
Smith-Waterman score: 2641; 99.5% identity (99.5% similar) in 394 aa overlap (1-393:32-425)

                                             10         20         
pF1KB9                               MDMHCKADPFSAMHR-HGGVNQLGGVFVNG
                                     ::::::::::::::  ::::::::::::::
NP_001 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNG
              10        20        30        40        50        60 

      30        40        50        60        70        80         
pF1KB9 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
              70        80        90       100       110       120 

      90       100       110       120       130       140         
pF1KB9 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
             130       140       150       160       170       180 

     150       160       170       180       190       200         
pF1KB9 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
             190       200       210       220       230       240 

     210       220       230       240       250       260         
pF1KB9 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
             250       260       270       280       290       300 

     270       280       290       300       310       320         
pF1KB9 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
             310       320       330       340       350       360 

     330       340       350       360       370       380         
pF1KB9 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAA
             370       380       390       400       410       420 

     390   
pF1KB9 YDRH
       ::::
NP_001 YDRH
           

>>NP_003980 (OMIM: 120330,167409,191830,616002) paired b  (409 aa)
 initn: 2482 init1: 2387 opt: 2488  Z-score: 1858.4  bits: 352.7 E(85289): 9e-97
Smith-Waterman score: 2488; 94.4% identity (95.2% similar) in 394 aa overlap (1-393:1-394)

               10         20        30        40        50         
pF1KB9 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
       ::::::::::::::  ::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB9 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB9 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB9 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB9 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA
              310       320       330       340       350       360

     360       370       380       390                  
pF1KB9 WRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH               
       :::::::::  :      :    : .:..    :               
NP_003 WRFSNPALLMPPPGAPPLPLLPLPMTATSYRGDHIKLQADSFGLHIVPV
              370       380       390       400         

>>XP_016871775 (OMIM: 120330,167409,191830,616002) PREDI  (440 aa)
 initn: 2482 init1: 2387 opt: 2488  Z-score: 1857.9  bits: 352.7 E(85289): 9.6e-97
Smith-Waterman score: 2488; 94.4% identity (95.2% similar) in 394 aa overlap (1-393:32-425)

                                             10         20         
pF1KB9                               MDMHCKADPFSAMHR-HGGVNQLGGVFVNG
                                     ::::::::::::::  ::::::::::::::
XP_016 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNG
              10        20        30        40        50        60 

      30        40        50        60        70        80         
pF1KB9 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
              70        80        90       100       110       120 

      90       100       110       120       130       140         
pF1KB9 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
             130       140       150       160       170       180 

     150       160       170       180       190       200         
pF1KB9 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
             190       200       210       220       230       240 

     210       220       230       240       250       260         
pF1KB9 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
             250       260       270       280       290       300 

     270       280       290       300       310       320         
pF1KB9 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
             310       320       330       340       350       360 

     330       340       350       360       370       380         
pF1KB9 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAA
       :::::::::::::::::::::::::::::::::::::::  :      :    : .:.. 
XP_016 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMPPPGAPPLPLLPLPMTATSY
             370       380       390       400       410       420 

     390                  
pF1KB9 YDRH               
          :               
XP_016 RGDHIKLQADSFGLHIVPV
             430       440

>>NP_003979 (OMIM: 120330,167409,191830,616002) paired b  (396 aa)
 initn: 2267 init1: 2172 opt: 2278  Z-score: 1703.1  bits: 324.0 E(85289): 4e-88
Smith-Waterman score: 2278; 91.3% identity (94.0% similar) in 381 aa overlap (1-378:1-380)

               10         20        30        40        50         
pF1KB9 MDMHCKADPFSAMHR-HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
       ::::::::::::::  ::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB9 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB9 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB9 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
              250       260       270       280       290       300

     300       310       320       330       340         350       
pF1KB9 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEF--SGNPYSHPQYTAYN
       :::::::::::::::::::::::::::::::::::::::: .    :.. .:.:      
NP_003 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRK-LA
              310       320       330       340       350          

       360       370       380       390    
pF1KB9 EAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH 
       :.    .:.  :::   .:.:                
NP_003 EVPPCVQPTGASSPATRTATPSTRPTTRLGDSATPPY
     360       370       380       390      

>>XP_016871776 (OMIM: 120330,167409,191830,616002) PREDI  (427 aa)
 initn: 2267 init1: 2172 opt: 2278  Z-score: 1702.6  bits: 324.0 E(85289): 4.2e-88
Smith-Waterman score: 2278; 91.3% identity (94.0% similar) in 381 aa overlap (1-378:32-411)

                                             10         20         
pF1KB9                               MDMHCKADPFSAMHR-HGGVNQLGGVFVNG
                                     ::::::::::::::  ::::::::::::::
XP_016 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNG
              10        20        30        40        50        60 

      30        40        50        60        70        80         
pF1KB9 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
              70        80        90       100       110       120 

      90       100       110       120       130       140         
pF1KB9 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFHPT
             130       140       150       160       170       180 

     150       160       170       180       190       200         
pF1KB9 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEG
             190       200       210       220       230       240 

     210       220       230       240       250       260         
pF1KB9 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSL
             250       260       270       280       290       300 

     270       280       290       300       310       320         
pF1KB9 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSY
             310       320       330       340       350       360 

     330       340         350       360       370       380       
pF1KB9 PTSTLAGMVPGSEF--SGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAA
       :::::::::: .    :.. .:.:      :.    .:.  :::   .:.:         
XP_016 PTSTLAGMVPEAAVGPSSSLMSKPGRK-LAEVPPCVQPTGASSPATRTATPSTRPTTRLG
             370       380        390       400       410       420

       390    
pF1KB9 AAYDRH 
              
XP_016 DSATPPY
              

>>XP_005251538 (OMIM: 167414,615545) PREDICTED: paired b  (390 aa)
 initn: 1642 init1: 962 opt: 1934  Z-score: 1448.6  bits: 276.8 E(85289): 6e-74
Smith-Waterman score: 1934; 72.6% identity (86.9% similar) in 398 aa overlap (1-393:1-390)

               10        20        30        40        50        60
pF1KB9 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
       :..::: :::..::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEIHCKHDPFASMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
XP_005 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE
               70        80        90       100       110       120

              130       140        150       160       170         
pF1KB9 GICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASND
        .::::::::::::::::::::::: . :.:        : .:.:: . .   :::.:.:
XP_005 RVCDNDTVPSVSSINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTD
              130       140       150               160       170  

     180        190         200       210       220       230      
pF1KB9 PVGS-YSINGILGI--PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQ
        .:: :::.:::::  : .. .:::::: ..:. :::: :  : : :::..:.: :::::
XP_005 SAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQ
            180       190       200       210       220       230  

        240       250       260        270       280       290     
pF1KB9 LEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSNV
       ::.:::::::  : :.: ..: :: :: .::: . .:. :::..:..:.. :  ..::.:
XP_005 LEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSV
            240       250       260       270       280       290  

         300       310       320       330       340       350     
pF1KB9 SGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTA
        : :.::.:::::.::::::::::::::.::::: . ::.::::::::::.:::::::..
XP_005 PGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSS
            300       310       320       330       340       350  

         360       370       380       390   
pF1KB9 YNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
       ::..::: ::.::.:::::::: ::.:: :::.:::::
XP_005 YNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
            360       370       380       390

>>NP_057953 (OMIM: 167414,615545) paired box protein Pax  (391 aa)
 initn: 1552 init1: 872 opt: 1848  Z-score: 1384.9  bits: 265.1 E(85289): 2.1e-70
Smith-Waterman score: 1848; 71.0% identity (84.8% similar) in 400 aa overlap (1-393:1-391)

               10          20        30        40        50        
pF1KB9 MDMHCKADPFSAMHR--HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
       ::.. :  :     :  :::::::::::::::::::::::::::::::::::::::::::
NP_057 MDLE-KNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
                10        20        30        40        50         

       60        70        80        90       100       110        
pF1KB9 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLL
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_057 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
      60        70        80        90       100       110         

      120       130       140        150       160       170       
pF1KB9 AEGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSAS
       :: .::::::::::::::::::::::: . :.:        : .:.:: . .   :::.:
NP_057 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVS
     120       130       140       150               160       170 

       180        190         200       210       220       230    
pF1KB9 NDPVGS-YSINGILGI--PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQ
       .: .:: :::.:::::  : .. .:::::: ..:. :::: :  : : :::..:.: :::
NP_057 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
             180       190       200       210       220       230 

          240       250       260        270       280       290   
pF1KB9 QQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGS
       ::::.:::::::  : :.: ..: :: :: .::: . .:. :::..:..:.. :  ..::
NP_057 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGS
             240       250       260       270       280       290 

           300       310       320       330       340       350   
pF1KB9 NVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQY
       .: : :.::.:::::.::::::::::::::.::::: . ::.::::::::::.:::::::
NP_057 SVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQY
             300       310       320       330       340       350 

           360       370       380       390   
pF1KB9 TAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
       ..::..::: ::.::.:::::::: ::.:: :::.:::::
NP_057 SSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
             360       370       380       390 

>>XP_011510096 (OMIM: 167415,218700) PREDICTED: paired b  (387 aa)
 initn: 1466 init1: 1191 opt: 1657  Z-score: 1243.6  bits: 238.9 E(85289): 1.6e-62
Smith-Waterman score: 1657; 65.3% identity (84.9% similar) in 378 aa overlap (16-391:10-385)

               10        20        30        40        50        60
pF1KB9 MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS
                      :::.:::::.::::::::.:::::::.::::::::::::::::::
XP_011       MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVS
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB9 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAE
       :::::::::::::::::.:::::::::::::::::.::..::::::::::::::::::::
XP_011 HGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAE
           60        70        80        90       100       110    

              130       140        150       160       170         
pF1KB9 GICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASND
       :.::::::::::::::::::::::::. :  . ..:   .::::..::.:  :  : ..:
XP_011 GVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSD
          120       130       140       150       160       170    

     180        190       200       210       220       230        
pF1KB9 PVGS-YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLE
        .:: :::::.::: . ...::: :.. ...   . ::::. .. :::::.:.:.:..::
XP_011 SLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLE
          180       190       200       210       220       230    

      240       250       260       270       280       290        
pF1KB9 ALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGT
        :.  :::  ::... .  : :.:::  : :: :.  ::. :..:. :..: :: :.:  
XP_011 PLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTH
          240       250       260        270       280        290  

      300       310       320       330       340       350        
pF1KB9 QTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNE
       ::::::.::.:.. ::::::::.: .::::: .:..:::: :::.::: :.:  :..:.:
XP_011 QTYPVVAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSE
            300       310       320       330       340       350  

      360       370       380       390   
pF1KB9 AWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
       :::: : .:::::::::.. : ::: ..:.:.:  
XP_011 AWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
            360       370       380       




393 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:29:38 2016 done: Fri Nov  4 18:29:40 2016
 Total Scan time:  8.420 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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