Result of FASTA (omim) for pF1KB9705
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9705, 335 aa
  1>>>pF1KB9705 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2868+/-0.000375; mu= 6.6859+/- 0.024
 mean_var=278.4731+/-56.823, 0's: 0 Z-trim(122.4): 117  B-trim: 0 in 0/62
 Lambda= 0.076857
 statistics sampled from 40263 (40394) to 40263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.474), width:  16
 Scan time:  7.650

The best scores are:                                      opt bits E(85289)
NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 2236 260.5 3.6e-69
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388)  931 115.9 1.4e-25
NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330)  814 102.9   1e-21
NP_006352 (OMIM: 604607) homeobox protein Hox-B13  ( 284)  669 86.7 6.5e-17
XP_011509370 (OMIM: 113200,113300,142989,186000,18 ( 324)  537 72.1 1.8e-12
NP_055027 (OMIM: 605559) homeobox protein Hox-C11  ( 304)  273 42.8  0.0011
NP_067016 (OMIM: 142988) homeobox protein Hox-D12  ( 270)  262 41.5  0.0024
NP_776272 (OMIM: 142975) homeobox protein Hox-C12  ( 282)  259 41.2  0.0031
NP_067015 (OMIM: 142986) homeobox protein Hox-D11  ( 338)  258 41.2  0.0038
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313)  246 39.8  0.0091


>>NP_000514 (OMIM: 113200,113300,142989,186000,186300,19  (343 aa)
 initn: 2236 init1: 2236 opt: 2236  Z-score: 1362.8  bits: 260.5 E(85289): 3.6e-69
Smith-Waterman score: 2236; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:9-343)

                       10        20        30        40        50  
pF1KB9         MDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB9 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB9 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB9 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB9 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF
              250       260       270       280       290       300

            300       310       320       330     
pF1KB9 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
       :::::::::::::::::::::::::::::::::::::::::::
NP_000 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
              310       320       330       340   

>>NP_000513 (OMIM: 140000,142959,176305) homeobox protei  (388 aa)
 initn: 1043 init1: 401 opt: 931  Z-score: 580.1  bits: 115.9 E(85289): 1.4e-25
Smith-Waterman score: 931; 50.1% identity (71.1% similar) in 353 aa overlap (6-333:53-387)

                                        10                20       
pF1KB9                          MDGLRADGGG--------AGGAPASSSSSSVAAAA
                                     : :::        :::  . ......::::
NP_000 GGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAA
             30        40        50        60        70        80  

        30          40        50        60        70        80     
pF1KB9 ASGQCRGFLS--APVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSA
       :..:::....  ::.  :. :. ..: . :  .:::::.. :  ...  ..:::.. . :
NP_000 AANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPA
             90       100       110       120       130       140  

          90       100       110        120       130        140   
pF1KB9 VVAARPEAPPAKECPAPTPAAAAAAPPSAPA-LGYGYHFGNGYYSC-RMSHGVGLQQNAL
         :.   :  ::.:   .: .:::   :.:: : ::: ::.::: : ::    : . ::.
NP_000 GPAG---AEAAKQC---SPCSAAAQSSSGPAALPYGY-FGSGYYPCARM----GPHPNAI
               150          160       170        180           190 

               150       160       170       180        190        
pF1KB9 KSSPH----ASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFY-QGYTS-PYQH---
       ::  .    :. ..: ..::::..: :     :.:  .:::: .:: :::.. ::.:   
NP_000 KSCAQPASAAAAAAF-ADKYMDTAGPA-----AEEFSSRAKEFAFYHQGYAAGPYHHHQP
             200        210            220       230       240     

          200          210        220       230       240       250
pF1KB9 VPGYIDM--VSTFGS-GEPRHEAY-ISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSS
       .:::.::  :  .:. :: :::   . ::.:: :.: ::::.:.:: :.: :  :.:::.
NP_000 MPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKST
         250       260       270       280       290       300     

              260       270       280       290       300       310
pF1KB9 FPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSER
       .: ::. .  :   :::::::::::::.:::::: ::: ::::.:::::::::.::::::
NP_000 LP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER
          310       320       330       340       350       360    

              320       330     
pF1KB9 QVTIWFQNRRVKDKKIVSKLKDTVS
       ::::::::::::.::...::: :  
NP_000 QVTIWFQNRRVKEKKVINKLKTTS 
          370       380         

>>NP_059106 (OMIM: 142976,614931) homeobox protein Hox-C  (330 aa)
 initn: 888 init1: 392 opt: 814  Z-score: 510.8  bits: 102.9 E(85289): 1e-21
Smith-Waterman score: 898; 48.3% identity (70.8% similar) in 329 aa overlap (8-331:29-323)

                                    10        20        30         
pF1KB9                      MDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAP
                                   :::.::. .....       :.: : :  ..:
NP_059 MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGG-------AGGGCSG--ASP
               10        20        30        40                 50 

      40        50        60        70        80        90         
pF1KB9 VFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKEC
         : . .: ...  :.          .. : .    :. ...  . . :  :::  :..:
NP_059 GKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAP--LGAPQGAVYTDIPA--PEA--ARQC
              60        70        80          90         100       

     100       110         120       130       140       150       
pF1KB9 PAPTPAAAAAAPP--SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVE
        :: ::     ::  :. .::::: ::..::.::.::.:.:::.     : :     : .
NP_059 -APPPA-----PPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQK-----PCAY---HPGD
          110            120       130       140               150 

       160       170       180       190       200          210    
pF1KB9 KYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFG-SG--EPRHEA
       :: . ::    ..:.... .:::: .:: ...: :: .:::.:.  . : ::  ::::.:
NP_059 KYPEPSG----ALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDA
                 160       170       180       190       200       

          220       230       240       250       260       270    
pF1KB9 YISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVP
        : .:::: :.:.:::.:::::.:.: :..:.::: :: ::.  ::..  ::::::::::
NP_059 LIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFP-DVVPLQPEVSSYRRGRKKRVP
       210       220       230       240        250       260      

          280       290       300       310       320       330    
pF1KB9 YTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTV
       :::.::::::.::: .:::.:.:::::::.::::::::::::::::::.::.::: :   
NP_059 YTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPH
        270       280       290       300       310       320      

           
pF1KB9 S   
           
NP_059 LHST
        330

>>NP_006352 (OMIM: 604607) homeobox protein Hox-B13 [Hom  (284 aa)
 initn: 726 init1: 568 opt: 669  Z-score: 424.7  bits: 86.7 E(85289): 6.5e-17
Smith-Waterman score: 749; 47.8% identity (74.1% similar) in 247 aa overlap (93-335:57-283)

             70        80        90       100       110       120  
pF1KB9 ASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYH
                                     : : :.:  : :..  .. : :: . ::: 
NP_006 LVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCH-PCPGVPQGTSP-AP-VPYGY-
         30        40        50        60         70          80   

            130       140        150       160       170       180 
pF1KB9 FGNGYYSCRMSHGVGLQQNALKSSPHA-SLGGFPVEKYMDVSGLASSSVPANEVPARAKE
       ::.::::::.:      ...::   .: .:...:.:          . . ..: :.:  :
NP_006 FGGGYYSCRVS------RSSLKPCAQAATLAAYPAE----------TPTAGEEYPSRPTE
             90             100       110                 120      

             190       200          210       220       230        
pF1KB9 VSFYQGYTSPYQHVPGYIDM--VSTFGS-GEPRHEAYISMEGYQSWTLANGWNSQVYCTK
        .:: :: . :: . .:.:.  :.:.:. :::::.. . ...::::.::.:::::. :  
NP_006 FAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQG
        130       140       150       160       170       180      

      240       250       260       270       280       290        
pF1KB9 DQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKR
       .:   . :::..:  . . . :: :..:::::::.::.: ::.::: ::: ::::.::::
NP_006 EQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKR
        190       200       210       220       230       240      

      300       310       320       330      
pF1KB9 RRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 
       :.:::::.:::::.::::::::::.::...:.:.... 
NP_006 RKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP
        250       260       270       280    

>>XP_011509370 (OMIM: 113200,113300,142989,186000,186300  (324 aa)
 initn: 586 init1: 537 opt: 537  Z-score: 344.9  bits: 72.1 E(85289): 1.8e-12
Smith-Waterman score: 537; 100.0% identity (100.0% similar) in 83 aa overlap (253-335:242-324)

            230       240       250       260       270       280  
pF1KB9 SWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKE
                                     ::::::::::::::::::::::::::::::
XP_011 GHFPHLHPFALPVRTMWIPHRDNGLCGMEIGDVALNQPDMCVYRRGRKKRVPYTKLQLKE
             220       230       240       250       260       270 

            290       300       310       320       330     
pF1KB9 LENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
             280       290       300       310       320    

>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom  (304 aa)
 initn: 275 init1: 242 opt: 273  Z-score: 187.0  bits: 42.8 E(85289): 0.0011
Smith-Waterman score: 277; 31.6% identity (52.6% similar) in 266 aa overlap (84-326:45-290)

            60        70        80        90       100       110   
pF1KB9 AAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPS
                                     :.: .  :.:: ...   :    .: .:: 
NP_055 RKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAP-SRQISYP---YSAQVPP-
           20        30        40        50         60             

           120             130       140               150         
pF1KB9 APALGYG------YHFGNGYYSCRMSHGVGLQQNALKSSP--------HASLGGF--PVE
       .  ..::      .:  :.: ::  .    .... :  :         ..: ::   :  
NP_055 VREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSA
      70        80        90       100       110       120         

       160       170       180          190       200       210    
pF1KB9 KYMDVSGLASSSVPANEVPARAKEVSF---YQGYTSPYQHVPGYIDMVSTFGSGEPRHEA
        .   .:. :: :  : :  .: .  :   : :  .:  . :         :.:: . : 
NP_055 PHATPAGFYSS-VNKNSVLPQAFDRFFDNAYCGGGDPPAEPP-------CSGKGEAKGEP
     130       140        150       160       170              180 

           220       230       240         250        260       270
pF1KB9 YIS-MEGYQSWTLANGWNSQVYCTKDQPQ--GSHFWKSSFPGD-VALNQPDMCVYRRGRK
             :  : . : : ....   . .:.  ::    .. :.  .: : :      : ::
NP_055 EAPPASGLASRAEA-GAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAP------RTRK
             190        200       210       220       230          

              280       290       300       310       320       330
pF1KB9 KRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKL
       :: ::.:.:..::: :. .: .:::.:: ..:   ::..::: :::::::.:.::.    
NP_055 KRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDR
          240       250       260       270       280       290    

                 
pF1KB9 KDTVS     
                 
NP_055 LQYFSGNPLL
          300    

>>NP_067016 (OMIM: 142988) homeobox protein Hox-D12 [Hom  (270 aa)
 initn: 333 init1: 255 opt: 262  Z-score: 181.0  bits: 41.5 E(85289): 0.0024
Smith-Waterman score: 290; 31.0% identity (55.4% similar) in 258 aa overlap (77-327:27-261)

         50        60        70        80        90       100      
pF1KB9 GRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECP-APTPA
                                     :.   ... ..:  : . :    : : :::
NP_067     MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPA
                   10        20        30        40        50      

         110       120       130       140       150       160     
pF1KB9 AAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYM--DVS
       . : : : : : ..:  :.. : .   :  .:::  . :..:. .   .  :     .  
NP_067 SCAPAQP-AGATAFG-GFSQPYLAG--SGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEER
         60         70           80        90       100       110  

            170        180       190       200       210        220
pF1KB9 GLASSS-VPANEV-PARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYIS-MEG
       : .  : .: . . :: :   .    :..  . .::     .:. .: :   .. .  .:
NP_067 GRTRPSFAPESSLAPAVAALKAAKYDYAGVGRATPG----STTLLQGAPCAPGFKDDTKG
            120       130       140           150       160        

              230       240        250       260       270         
pF1KB9 YQSWTLANGWNSQVYCTKDQ-PQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQ
         . ...    . . : . . :.:   : .. ::             :.:::: :::: :
NP_067 PLNLNMTVQAAGVASCLRPSLPDGLP-WGAA-PG-------------RARKKRKPYTKQQ
      170       180       190         200                    210   

     280       290       300       310       320       330      
pF1KB9 LKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 
       . :::::. .:.:::..::...:   :::..:: :::::::.: :..:         
NP_067 IAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
           220       230       240       250       260       270

>>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom  (282 aa)
 initn: 325 init1: 242 opt: 259  Z-score: 179.0  bits: 41.2 E(85289): 0.0031
Smith-Waterman score: 271; 31.4% identity (52.2% similar) in 274 aa overlap (63-327:31-273)

             40        50        60        70        80        90  
pF1KB9 RGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPE
                                     :::   ::     . :    ...   . : 
NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGL---PSLSYPRRDNVCSLSWPS
               10        20        30           40        50       

            100        110       120          130       140        
pF1KB9 APPAKECPAP-TPAAAAAAPPSAPALGYGY-HFGNGYYS--CRMSHGVGLQQNALKSSPH
       : : .  : :   . ..  :: . .   .  . :.:::   :  . : ::...    .: 
NP_776 AEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPG
        60        70        80        90       100       110       

      150         160       170       180       190       200      
pF1KB9 ASLGG--FPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFG
       :. :.  .:.:     ::      :    ::         :.   :    :  :  .  :
NP_776 AGPGAALLPLEP----SG------P----PA--------LGFKYDYAAGGGGGD--GGGG
       120           130                         140         150   

        210        220       230       240       250         260   
pF1KB9 SGEPRHEAYI-SMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGD--VALNQPDMC
       .: :.      :.:. .: .: :  :. .     .: :: . .   ::    : . : . 
NP_776 AGPPHDPPSCQSLESDSSSSLLNEGNKGA--GAGDP-GS-LVSPLNPGGGLSASGAPWYP
           160       170       180           190       200         

           270       280       290       300       310       320   
pF1KB9 VYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKD
       .  :.:::: ::.:::: :::.:. .:.::....::..:   :::..:: :::::::.: 
NP_776 INSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKK
     210       220       230       240       250       260         

           330      
pF1KB9 KKIVSKLKDTVS 
       :...         
NP_776 KRLLLREQALSFF
     270       280  

>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom  (338 aa)
 initn: 393 init1: 243 opt: 258  Z-score: 177.5  bits: 41.2 E(85289): 0.0038
Smith-Waterman score: 313; 31.8% identity (49.5% similar) in 327 aa overlap (9-326:77-324)

                                     10        20        30        
pF1KB9                       MDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSA
                                     ::.::. :...::. . ....:   :.  :
NP_067 YSSNLAPHVQPVREVAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGY--A
         50        60        70        80        90       100      

       40        50        60        70        80        90        
pF1KB9 PVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKE
       : .:      ::::::::::::  :.                         :   ::: .
NP_067 PYYA------AAAAAAAAAAAAEEAA-----------------------MQRELLPPAGR
                110       120                              130     

      100            110       120       130          140       150
pF1KB9 CP-----APTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGV---GLQQNALKSSPHAS
        :     :: :. :: .:: .:: : . .:    ::    .:.   :..:   ...:   
NP_067 RPDVLFKAPEPVCAAPGPPHGPA-GAASNF----YSAVGRNGILPQGFDQ-FYEAAP---
         140       150        160           170       180          

              160       170       180       190       200       210
pF1KB9 LGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEP
         : :       .:      ::   :  : .    .:  .:   . :        :.: :
NP_067 --GPPF------AGPQPPPPPAPPQPEGAAD----KG--DPRTGAGG--------GGGSP
          190             200           210                 220    

              220       230       240       250       260          
pF1KB9 RHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVY-RRGR
         .:  . :                  :   .::     . ::... .. .  :  .:.:
NP_067 CTKATPGSE-----------------PKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSR
          230                        240       250       260       

     270       280       290       300       310       320         
pF1KB9 KKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSK
       ::: :::: :..::: :. .: .:::.:: ..:   ::..::: :::::::.:.::.   
NP_067 KKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRD
       270       280       290       300       310       320       

     330          
pF1KB9 LKDTVS     
                  
NP_067 RLQYFTGNPLF
       330        

>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A  (313 aa)
 initn: 458 init1: 246 opt: 246  Z-score: 170.7  bits: 39.8 E(85289): 0.0091
Smith-Waterman score: 246; 59.0% identity (82.0% similar) in 61 aa overlap (266-326:239-299)

         240       250       260       270       280       290     
pF1KB9 CTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINK
                                     .: :::: :::: :..::: :. .. .:::
NP_005 EKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINK
      210       220       230       240       250       260        

         300       310       320       330          
pF1KB9 DKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS     
       .:: ..:   ::..::: :::::::.:.:::              
NP_005 EKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
      270       280       290       300       310   




335 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:26:34 2016 done: Fri Nov  4 18:26:35 2016
 Total Scan time:  7.650 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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