Result of FASTA (ccds) for pF1KB9705
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9705, 335 aa
  1>>>pF1KB9705 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7207+/-0.000897; mu= 4.0220+/- 0.055
 mean_var=287.4366+/-60.265, 0's: 0 Z-trim(114.9): 79  B-trim: 0 in 0/56
 Lambda= 0.075649
 statistics sampled from 15345 (15422) to 15345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.474), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS2264.2 HOXD13 gene_id:3239|Hs108|chr2          ( 343) 2236 256.8 1.9e-68
CCDS5412.1 HOXA13 gene_id:3209|Hs108|chr7          ( 388)  931 114.4 1.6e-25
CCDS8865.1 HOXC13 gene_id:3229|Hs108|chr12         ( 330)  814 101.5 9.7e-22
CCDS11536.1 HOXB13 gene_id:10481|Hs108|chr17       ( 284)  669 85.6 5.1e-17


>>CCDS2264.2 HOXD13 gene_id:3239|Hs108|chr2               (343 aa)
 initn: 2236 init1: 2236 opt: 2236  Z-score: 1342.3  bits: 256.8 E(32554): 1.9e-68
Smith-Waterman score: 2236; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:9-343)

                       10        20        30        40        50  
pF1KB9         MDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB9 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB9 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB9 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB9 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF
              250       260       270       280       290       300

            300       310       320       330     
pF1KB9 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS22 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
              310       320       330       340   

>>CCDS5412.1 HOXA13 gene_id:3209|Hs108|chr7               (388 aa)
 initn: 1043 init1: 401 opt: 931  Z-score: 571.9  bits: 114.4 E(32554): 1.6e-25
Smith-Waterman score: 931; 50.1% identity (71.1% similar) in 353 aa overlap (6-333:53-387)

                                        10                20       
pF1KB9                          MDGLRADGGG--------AGGAPASSSSSSVAAAA
                                     : :::        :::  . ......::::
CCDS54 GGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAA
             30        40        50        60        70        80  

        30          40        50        60        70        80     
pF1KB9 ASGQCRGFLS--APVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSA
       :..:::....  ::.  :. :. ..: . :  .:::::.. :  ...  ..:::.. . :
CCDS54 AANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPA
             90       100       110       120       130       140  

          90       100       110        120       130        140   
pF1KB9 VVAARPEAPPAKECPAPTPAAAAAAPPSAPA-LGYGYHFGNGYYSC-RMSHGVGLQQNAL
         :.   :  ::.:   .: .:::   :.:: : ::: ::.::: : ::    : . ::.
CCDS54 GPAG---AEAAKQC---SPCSAAAQSSSGPAALPYGY-FGSGYYPCARM----GPHPNAI
               150          160       170        180           190 

               150       160       170       180        190        
pF1KB9 KSSPH----ASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFY-QGYTS-PYQH---
       ::  .    :. ..: ..::::..: :     :.:  .:::: .:: :::.. ::.:   
CCDS54 KSCAQPASAAAAAAF-ADKYMDTAGPA-----AEEFSSRAKEFAFYHQGYAAGPYHHHQP
             200        210            220       230       240     

          200          210        220       230       240       250
pF1KB9 VPGYIDM--VSTFGS-GEPRHEAY-ISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSS
       .:::.::  :  .:. :: :::   . ::.:: :.: ::::.:.:: :.: :  :.:::.
CCDS54 MPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKST
         250       260       270       280       290       300     

              260       270       280       290       300       310
pF1KB9 FPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSER
       .: ::. .  :   :::::::::::::.:::::: ::: ::::.:::::::::.::::::
CCDS54 LP-DVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER
          310       320       330       340       350       360    

              320       330     
pF1KB9 QVTIWFQNRRVKDKKIVSKLKDTVS
       ::::::::::::.::...::: :  
CCDS54 QVTIWFQNRRVKEKKVINKLKTTS 
          370       380         

>>CCDS8865.1 HOXC13 gene_id:3229|Hs108|chr12              (330 aa)
 initn: 888 init1: 392 opt: 814  Z-score: 503.7  bits: 101.5 E(32554): 9.7e-22
Smith-Waterman score: 898; 48.3% identity (70.8% similar) in 329 aa overlap (8-331:29-323)

                                    10        20        30         
pF1KB9                      MDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAP
                                   :::.::. .....       :.: : :  ..:
CCDS88 MTTSLLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGG-------AGGGCSG--ASP
               10        20        30        40                 50 

      40        50        60        70        80        90         
pF1KB9 VFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKEC
         : . .: ...  :.          .. : .    :. ...  . . :  :::  :..:
CCDS88 GKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAP--LGAPQGAVYTDIPA--PEA--ARQC
              60        70        80          90         100       

     100       110         120       130       140       150       
pF1KB9 PAPTPAAAAAAPP--SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVE
        :: ::     ::  :. .::::: ::..::.::.::.:.:::.     : :     : .
CCDS88 -APPPA-----PPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQK-----PCAY---HPGD
          110            120       130       140               150 

       160       170       180       190       200          210    
pF1KB9 KYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFG-SG--EPRHEA
       :: . ::    ..:.... .:::: .:: ...: :: .:::.:.  . : ::  ::::.:
CCDS88 KYPEPSG----ALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDA
                 160       170       180       190       200       

          220       230       240       250       260       270    
pF1KB9 YISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVP
        : .:::: :.:.:::.:::::.:.: :..:.::: :: ::.  ::..  ::::::::::
CCDS88 LIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFP-DVVPLQPEVSSYRRGRKKRVP
       210       220       230       240        250       260      

          280       290       300       310       320       330    
pF1KB9 YTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTV
       :::.::::::.::: .:::.:.:::::::.::::::::::::::::::.::.::: :   
CCDS88 YTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPH
        270       280       290       300       310       320      

           
pF1KB9 S   
           
CCDS88 LHST
        330

>>CCDS11536.1 HOXB13 gene_id:10481|Hs108|chr17            (284 aa)
 initn: 726 init1: 568 opt: 669  Z-score: 419.0  bits: 85.6 E(32554): 5.1e-17
Smith-Waterman score: 749; 47.8% identity (74.1% similar) in 247 aa overlap (93-335:57-283)

             70        80        90       100       110       120  
pF1KB9 ASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYH
                                     : : :.:  : :..  .. : :: . ::: 
CCDS11 LVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCH-PCPGVPQGTSP-AP-VPYGY-
         30        40        50        60         70          80   

            130       140        150       160       170       180 
pF1KB9 FGNGYYSCRMSHGVGLQQNALKSSPHA-SLGGFPVEKYMDVSGLASSSVPANEVPARAKE
       ::.::::::.:      ...::   .: .:...:.:          . . ..: :.:  :
CCDS11 FGGGYYSCRVS------RSSLKPCAQAATLAAYPAE----------TPTAGEEYPSRPTE
             90             100       110                 120      

             190       200          210       220       230        
pF1KB9 VSFYQGYTSPYQHVPGYIDM--VSTFGS-GEPRHEAYISMEGYQSWTLANGWNSQVYCTK
        .:: :: . :: . .:.:.  :.:.:. :::::.. . ...::::.::.:::::. :  
CCDS11 FAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQG
        130       140       150       160       170       180      

      240       250       260       270       280       290        
pF1KB9 DQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKR
       .:   . :::..:  . . . :: :..:::::::.::.: ::.::: ::: ::::.::::
CCDS11 EQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKR
        190       200       210       220       230       240      

      300       310       320       330      
pF1KB9 RRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 
       :.:::::.:::::.::::::::::.::...:.:.... 
CCDS11 RKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP
        250       260       270       280    




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:26:34 2016 done: Fri Nov  4 18:26:34 2016
 Total Scan time:  2.470 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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