Result of FASTA (omim) for pF1KB9696
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9696, 265 aa
  1>>>pF1KB9696 265 - 265 aa - 265 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2457+/-0.000415; mu= -6.6332+/- 0.026
 mean_var=594.3923+/-121.546, 0's: 0 Z-trim(127.0): 100  B-trim: 916 in 1/61
 Lambda= 0.052606
 statistics sampled from 54059 (54204) to 54059 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.636), width:  16
 Scan time:  8.390

The best scores are:                                      opt bits E(85289)
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 1881 156.1 6.2e-38
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321)  629 61.2 2.8e-09
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313)  594 58.5 1.7e-08
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284)  574 56.9 4.7e-08
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204)  504 51.4 1.5e-06
XP_011533181 (OMIM: 600297) PREDICTED: homeobox pr ( 196)  492 50.5 2.8e-06
XP_011533178 (OMIM: 600297) PREDICTED: homeobox pr ( 281)  431 46.1 8.6e-05
XP_011533179 (OMIM: 600297) PREDICTED: homeobox pr ( 273)  400 43.7 0.00043
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  371 41.5  0.0019
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  371 41.5  0.0019
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  368 41.6  0.0031
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  368 41.6  0.0031
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  368 41.6  0.0031
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  368 41.6  0.0031
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  368 41.6  0.0031
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  368 41.6  0.0031
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  368 41.6  0.0031
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  352 40.1  0.0057
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  343 39.3  0.0083
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  340 39.1  0.0096


>>NP_001795 (OMIM: 600746) homeobox protein CDX-1 [Homo   (265 aa)
 initn: 1881 init1: 1881 opt: 1881  Z-score: 802.0  bits: 156.1 E(85289): 6.2e-38
Smith-Waterman score: 1881; 99.6% identity (99.6% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KB9 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
              190       200       210       220       230       240

              250       260     
pF1KB9 GGLCPSNTSLLATSSPMPVKEEFLP
       :::::::::::::::::::::::::
NP_001 GGLCPSNTSLLATSSPMPVKEEFLP
              250       260     

>>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei  (321 aa)
 initn: 592 init1: 528 opt: 629  Z-score: 287.6  bits: 61.2 E(85289): 2.8e-09
Smith-Waterman score: 702; 46.2% identity (61.7% similar) in 303 aa overlap (9-259:9-304)

               10        20         30        40                 50
pF1KB9 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
               ::  .::. .: .. :.:.:: .       .::::::...:         ..
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
               10        20        30              40        50    

               60         70        80                   90        
pF1KB9 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
XP_011 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
           60        70         80        90       100       110   

      100                 110       120               130       140
pF1KB9 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRRTPYEWMRRSV
        :   :      :. .:    :::     ::  :.        :::.:::.  ::::. .
XP_011 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
           120       130       140       150       160       170   

                     150       160       170       180       190   
pF1KB9 AAGGGG-------GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL
         . :.       .. :::::::::::::::::::::::::::::::::::.::::.:::
XP_011 QQSLGSQALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGL
           180       190       200       210       220       230   

           200       210          220       230        240         
pF1KB9 TERQVKIWFQNRRAKERKVNKKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCP-SNT
       .:::::::::::::::::.::::   ::::::::::        :  ::  .   : : .
XP_011 SERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPV
           240       250       260       270       280       290   

      250       260                
pF1KB9 SLLATSSPMPVKEEFLP           
       : : .: :  :                 
XP_011 SSLQASVPGSVPGVLGPTGGVLNPTVTQ
           300       310       320 

>>NP_001256 (OMIM: 600297) homeobox protein CDX-2 [Homo   (313 aa)
 initn: 549 init1: 485 opt: 594  Z-score: 273.4  bits: 58.5 E(85289): 1.7e-08
Smith-Waterman score: 754; 49.6% identity (65.2% similar) in 282 aa overlap (1-238:1-274)

               10        20         30        40                 50
pF1KB9 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
       :::.:.::::  .::. .: .. :.:.:: .       .::::::...:         ..
NP_001 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
               10        20        30              40        50    

               60         70        80                   90        
pF1KB9 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
NP_001 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
           60        70         80        90       100       110   

      100                 110       120               130       140
pF1KB9 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRRTPYEWMRRSV
        :   :      :. .:    :::     ::  :.        :::.:::.  ::::.  
NP_001 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-
           120       130       140       150       160       170   

              150       160       170       180       190       200
pF1KB9 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI
       :  . :.. :::::::::::::::::::::::::::::::::::.::::.:::.::::::
NP_001 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
            180       190       200       210       220       230  

              210          220       230        240       250      
pF1KB9 WFQNRRAKERKVNKKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCPSNTSLLATSSP
       :::::::::::.::::   ::::::::::        :  ::                  
NP_001 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
            240       250       260       270       280       290  

        260                 
pF1KB9 MPVKEEFLP            
                            
NP_001 SGSVPGVLGPTGGVLNPTVTQ
            300       310   

>>NP_005184 (OMIM: 300025) homeobox protein CDX-4 [Homo   (284 aa)
 initn: 606 init1: 394 opt: 574  Z-score: 265.6  bits: 56.9 E(85289): 4.7e-08
Smith-Waterman score: 615; 45.1% identity (66.8% similar) in 244 aa overlap (1-219:1-238)

               10            20        30            40        50  
pF1KB9 MYVGYVLDKDSPVYPG----PARPASLGLGPQAYG-PPAPPP---APPQYPDFSSYSHVE
       :: . .:.:.. .:::    :.  .. : :  . :  : :     : : .  . .: :. 
NP_005 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHM-
               10        20        30        40        50          

                 60        70        80               90       100 
pF1KB9 PAPAP--PT--AWGAPFPAPKDDWAAAYGPGPA---APA----ASPASLAFGPPPDFSPV
       :.  :  :.  .::.:.  :..::..  ::. .   .:.    .:::..      ...::
NP_005 PSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPV
      60        70        80        90       100       110         

                   110       120       130       140       150     
pF1KB9 PAP------PGPGPGLLAQPLGGPGTPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRTKD
        .       :: . : :.   .: .  :::. .:..:: :::..: .     .::::::.
NP_005 GGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKE
     120       130       140       150       160            170    

         160       170       180       190       200       210     
pF1KB9 KYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK
       ::::::::::::::::::: .:::::.::::::.::::.:::::::::::::::::. ::
NP_005 KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKK
          180       190       200       210       220       230    

         220       230       240       250       260     
pF1KB9 KQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
       : .:                                              
NP_005 KISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
          240       250       260       270       280    

>>XP_011533180 (OMIM: 600297) PREDICTED: homeobox protei  (204 aa)
 initn: 497 init1: 497 opt: 504  Z-score: 238.4  bits: 51.4 E(85289): 1.5e-06
Smith-Waterman score: 504; 63.1% identity (73.0% similar) in 141 aa overlap (124-259:47-187)

           100       110       120       130       140       150   
pF1KB9 PPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRT
                                     :::..     :  : . :  . ... ::::
XP_011 YSQLQLYKSKRPLGAVSGHRFLRHCAHARESPGGNAADRGEGHRSASALTSPSSTVKTRT
         20        30        40        50        60        70      

           160       170       180       190       200       210   
pF1KB9 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVN
       :::::::::::::::::::::::::::::::.::::.:::.:::::::::::::::::.:
XP_011 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKIN
         80        90       100       110       120       130      

              220       230        240        250       260        
pF1KB9 KKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCP-SNTSLLATSSPMPVKEEFLP   
       :::   ::::::::::        :  ::  .   : : .: : .: :  :         
XP_011 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGG
        140       150       160       170       180       190      

XP_011 VLNPTVTQ
        200    

>>XP_011533181 (OMIM: 600297) PREDICTED: homeobox protei  (196 aa)
 initn: 482 init1: 482 opt: 492  Z-score: 233.7  bits: 50.5 E(85289): 2.8e-06
Smith-Waterman score: 492; 69.7% identity (77.0% similar) in 122 aa overlap (143-259:58-179)

            120       130       140       150       160       170  
pF1KB9 AQPLGGPGTPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKE
                                     :  ..: :::::::::::::::::::::::
XP_011 PLGAVSGHRFLRHCAHARESPGGNAADRGEGHRSASVKTRTKDKYRVVYTDHQRLELEKE
        30        40        50        60        70        80       

            180       190       200       210          220         
pF1KB9 FHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK---QQQQQPPQPPMAH
       ::::::::::::.::::.:::.:::::::::::::::::.::::   ::::::::::   
XP_011 FHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPP
        90       100       110       120       130       140       

     230        240        250       260                
pF1KB9 DITATPA-GPSLGGLCP-SNTSLLATSSPMPVKEEFLP           
            :  ::  .   : : .: : .: :  :                 
XP_011 PQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ
       150       160       170       180       190      

>>XP_011533178 (OMIM: 600297) PREDICTED: homeobox protei  (281 aa)
 initn: 533 init1: 330 opt: 431  Z-score: 207.0  bits: 46.1 E(85289): 8.6e-05
Smith-Waterman score: 504; 42.4% identity (61.2% similar) in 250 aa overlap (9-211:9-248)

               10        20         30        40                 50
pF1KB9 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
               ::  .::. .: .. :.:.:: .       .::::::...:         ..
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
               10        20        30              40        50    

               60         70        80                   90        
pF1KB9 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
XP_011 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
           60        70         80        90       100       110   

      100                 110       120               130       140
pF1KB9 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRRTPYEWMRRSV
        :   :      :. .:    :::     ::  :.        :::.:::.  ::::. .
XP_011 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
           120       130       140       150       160       170   

                     150       160       170       180       190   
pF1KB9 AAGGGG-------GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL
         . :.       .. :::::::::::::::::::::::::::::::::::.::::.:::
XP_011 QQSLGSQALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGL
           180       190       200       210       220       230   

           200       210       220       230       240       250   
pF1KB9 TERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLAT
       .:: .:  :  : :..:.                                          
XP_011 SER-LKSGF--RTAEQRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL         
            240         250       260       270       280          

>>XP_011533179 (OMIM: 600297) PREDICTED: homeobox protei  (273 aa)
 initn: 614 init1: 287 opt: 400  Z-score: 194.4  bits: 43.7 E(85289): 0.00043
Smith-Waterman score: 560; 45.0% identity (63.7% similar) in 251 aa overlap (1-211:1-240)

               10        20         30        40                 50
pF1KB9 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
       :::.:.::::  .::. .: .. :.:.:: .       .::::::...:         ..
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
               10        20        30              40        50    

               60         70        80                   90        
pF1KB9 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
XP_011 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
           60        70         80        90       100       110   

      100                 110       120               130       140
pF1KB9 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRRTPYEWMRRSV
        :   :      :. .:    :::     ::  :.        :::.:::.  ::::.  
XP_011 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-
           120       130       140       150       160       170   

              150       160       170       180       190       200
pF1KB9 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI
       :  . :.. :::::::::::::::::::::::::::::::::::.::::.:::.:: .: 
XP_011 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKS
            180       190       200       210       220        230 

              210       220       230       240       250       260
pF1KB9 WFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVK
        :  : :..:.                                                 
XP_011 GF--RTAEQRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL                
               240       250       260       270                   

>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 395 init1: 227 opt: 371  Z-score: 182.7  bits: 41.5 E(85289): 0.0019
Smith-Waterman score: 388; 33.9% identity (56.1% similar) in 239 aa overlap (7-239:29-243)

                                     10        20        30        
pF1KB9                       MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPA
                                   . . :: : : .: ...    :   :: ::: 
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPP-PPPR
               10        20        30        40        50          

       40        50        60        70        80        90        
pF1KB9 PPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDF
       : .::.  .::      .: .. :             .::. :.      : ..  :  .
NP_705 P-SYPE-RQYS-CTSLQGPGNSRG-------------HGPAQAGHHHPEKSQSLCEPAPL
      60           70        80                     90       100   

      100       110       120       130           140       150    
pF1KB9 SPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRRTPYEWMRR----SVAAGGGGGSGKTRTK
       : . : :.:.:   .::  .:  ::: ....   : ::..    .:  . .::  :    
NP_705 SGASASPSPAPPACSQP--APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPK----
           110       120         130       140       150           

          160       170       180       190       200       210    
pF1KB9 DKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNK
        . :..:: .: :::::::::.::.: ::. :.: .: :.:::.:::::::: : .: ..
NP_705 -RSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR
        160       170       180       190       200       210      

            220       230       240       250       260     
pF1KB9 --KKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
         . . .. ::       ..:.  : :                          
NP_705 LPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL     
        220       230       240       250       260         

>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 395 init1: 227 opt: 371  Z-score: 182.7  bits: 41.5 E(85289): 0.0019
Smith-Waterman score: 388; 33.9% identity (56.1% similar) in 239 aa overlap (7-239:29-243)

                                     10        20        30        
pF1KB9                       MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPA
                                   . . :: : : .: ...    :   :: ::: 
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPP-PPPR
               10        20        30        40        50          

       40        50        60        70        80        90        
pF1KB9 PPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDF
       : .::.  .::      .: .. :             .::. :.      : ..  :  .
NP_055 P-SYPE-RQYS-CTSLQGPGNSRG-------------HGPAQAGHHHPEKSQSLCEPAPL
      60           70        80                     90       100   

      100       110       120       130           140       150    
pF1KB9 SPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRRTPYEWMRR----SVAAGGGGGSGKTRTK
       : . : :.:.:   .::  .:  ::: ....   : ::..    .:  . .::  :    
NP_055 SGASASPSPAPPACSQP--APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPK----
           110       120         130       140       150           

          160       170       180       190       200       210    
pF1KB9 DKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNK
        . :..:: .: :::::::::.::.: ::. :.: .: :.:::.:::::::: : .: ..
NP_055 -RSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR
        160       170       180       190       200       210      

            220       230       240       250       260     
pF1KB9 --KKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
         . . .. ::       ..:.  : :                          
NP_055 LPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL     
        220       230       240       250       260         




265 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:23:46 2016 done: Fri Nov  4 18:23:47 2016
 Total Scan time:  8.390 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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