Result of FASTA (omim) for pF1KB9695
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9695, 264 aa
  1>>>pF1KB9695 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0554+/-0.000288; mu= 10.9175+/- 0.018
 mean_var=224.3327+/-46.011, 0's: 0 Z-trim(124.9): 211  B-trim: 53 in 1/58
 Lambda= 0.085630
 statistics sampled from 47283 (47553) to 47283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.558), width:  16
 Scan time:  7.930

The best scores are:                                      opt bits E(85289)
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 1834 238.1 1.2e-62
NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapie ( 304)  516 75.4 1.4e-13
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283)  355 55.5 1.3e-07
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  348 54.5 2.2e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  328 52.4 1.7e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  328 52.4 1.7e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  328 52.4 1.7e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  328 52.4 1.7e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  328 52.4 1.7e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  328 52.4 1.7e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  328 52.4 1.7e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  325 51.8 1.8e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  315 50.5 4.1e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  317 51.0 4.3e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  317 51.0 4.3e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  315 50.6 4.6e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  315 50.6 4.6e-06
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  315 50.7 5.1e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  315 50.8 5.1e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  315 50.8 5.1e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  315 50.8 5.1e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  315 50.8 5.1e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  315 50.8 5.1e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  315 50.8 5.1e-06
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  315 50.8 5.5e-06
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  315 50.9 6.1e-06
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401)  312 50.3 6.3e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376)  310 50.1 7.2e-06
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189)  302 48.7 9.5e-06
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  304 49.1 9.8e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  304 49.1 9.8e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  300 48.6 1.4e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  295 48.0 2.1e-05
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  295 48.0 2.1e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  286 47.1 5.5e-05
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  281 46.2 6.3e-05
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247)  279 46.0   8e-05


>>NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapiens]   (264 aa)
 initn: 1834 init1: 1834 opt: 1834  Z-score: 1245.5  bits: 238.1 E(85289): 1.2e-62
Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
              190       200       210       220       230       240

              250       260    
pF1KB9 EDDDELPMSPSSSGKDDRDLTVTP
       ::::::::::::::::::::::::
NP_663 EDDDELPMSPSSSGKDDRDLTVTP
              250       260    

>>NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapiens]   (304 aa)
 initn: 649 init1: 415 opt: 516  Z-score: 364.8  bits: 75.4 E(85289): 1.4e-13
Smith-Waterman score: 676; 44.6% identity (64.3% similar) in 294 aa overlap (21-261:25-302)

                   10        20        30        40        50      
pF1KB9     MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLC
                               :. .:  ..: ..::: ..   .:: : .::.: .:
NP_573 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC
               10        20        30        40         50         

         60        70                                80          90
pF1KB9 VCPLCVTASQLHGPPGP------------------------PALPLLKASFP--PFGSQY
       ::::::: :.::.  :                          ::::::..:   :  .:.
NP_573 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF
      60         70        80        90       100       110        

                          100       110       120                  
pF1KB9 C----------HAPLGRQH--SAVSPGVAHGPAAAAAAAALYQ--------------TSY
       :          : :  ..:  .  .:: : . ::::::::                 :.:
NP_573 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY
      120       130       140       150       160       170        

          130       140        150       160       170       180   
pF1KB9 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY
        . :::.:::... .: ..:.:..:::::::::::::::::::.::::::::::::::::
NP_573 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY
      180       190       200       210       220       230        

           190       200       210       220       230       240   
pF1KB9 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD
       :::::::::::::::::::::::::...            ..  ::::.. :... ....
NP_573 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE
      240       250       260                   270        280     

           250       260    
pF1KB9 DELPMSPSSSGKDDRDLTVTP
       ::  .::.:.. ::....   
NP_573 DEDSLSPASAN-DDKEISPL 
         290        300     

>>NP_000200 (OMIM: 125853,260370,600733,606176,606392) p  (283 aa)
 initn: 460 init1: 268 opt: 355  Z-score: 257.7  bits: 55.5 E(85289): 1.3e-07
Smith-Waterman score: 367; 36.2% identity (54.1% similar) in 246 aa overlap (20-254:25-246)

                    10        20           30        40        50  
pF1KB9      MPRSFLVDSLVLREAGEKKAPE--GSPPP-LFPYAVPPPHALHGLSPGACHARKA
                               :::  .:::  :.    :::   : . :::  : . 
NP_000 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPF-PGALGALEQ
               10        20        30        40        50          

             60        70          80        90         100        
pF1KB9 GLLCVCPLCVTASQLHGPP--GPPALPLLKASFPPFGSQYC--HAPLGRQHSAVSPGVAH
       :     :  ..  ..  ::    ::.  :.  .:   .:    : : :    .. ::: .
NP_000 G----SPPDISPYEV--PPLADDPAVAHLHHHLP---AQLALPHPPAGPFPEGAEPGVLE
      60            70          80           90       100       110

      110       120       130          140        150       160    
pF1KB9 GPAAAAAAAALYQTSYPLPDPRQFHCIS---VDSSSNQLPS-SKRMRTAFTSTQLLELER
        :  .       :  .:     . :  .   . ..    :  .:: :::.: .::::::.
NP_000 EPNRV-------QLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEK
                     120       130       140       150       160   

          170       180       190       200       210       220    
pF1KB9 EFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGS
       ::  : :.:: ::.:.:..:::.:...::::::::.: :::    ... ::: ..:::: 
NP_000 EFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE---EDKKRGGGTAVGGGGV
           170       180       190       200          210       220

          230       240       250       260                        
pF1KB9 APQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP                    
       :     ::  :    .:.   ::  :  .:                              
NP_000 AEPEQDCAVTS----GEELLALPPPPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAP
              230           240       250       260       270      

>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo  (251 aa)
 initn: 370 init1: 291 opt: 348  Z-score: 253.6  bits: 54.5 E(85289): 2.2e-07
Smith-Waterman score: 353; 38.1% identity (52.4% similar) in 210 aa overlap (23-228:72-246)

                       10        20        30        40        50  
pF1KB9         MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKA
                                     : :::  :   :::    :::: :      
NP_076 QRRESSFQPEAGFGRRAACTVQRYAACRDPGPPPP--PPPPPPPPPPPGLSPRA------
              50        60        70          80        90         

             60        70        80        90       100       110  
pF1KB9 GLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAA
                        :  :::  ::     :  .: :.:    . :   :  :..:  
NP_076 -----------------PAPPPAGALL-----PEPGQRCEAV---SSSPPPPPCAQNPLH
                            100            110          120        

            120       130       140        150       160       170 
pF1KB9 AAAAAALYQTSYPLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMY
        . . .  .     :  :. :  .:. . ..  :  :: :::.:  :.::::.::  : :
NP_076 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEP--KRSRTAYTRQQVLELEKEFHYNRY
      130       140       150       160         170       180      

             180       190       200       210          220        
pF1KB9 LSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHR---GGGGGGAGGGGSAPQG
       :.: ::.:::  : :::.:.::::::::.: ::. :  : .   ::..:.:::  . :.:
NP_076 LTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNG
        190       200       210       220       230       240      

      230       240       250       260    
pF1KB9 CKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP
                                           
NP_076 GPRAL                               
        250                                

>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
NP_705 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
NP_705 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
NP_705 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
NP_705 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
NP_705 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 

>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
XP_011 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
XP_011 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
XP_011 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
XP_011 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 

>>NP_109377 (OMIM: 142954) homeobox protein Hox-A3 isofo  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
NP_109 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
NP_109 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
NP_109 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
NP_109 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
NP_109 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 

>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 

>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 

>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei  (443 aa)
 initn: 384 init1: 301 opt: 328  Z-score: 237.6  bits: 52.4 E(85289): 1.7e-06
Smith-Waterman score: 347; 34.6% identity (55.4% similar) in 231 aa overlap (2-228:62-272)

                                            10          20         
pF1KB9                              MPRSFLVDSLVLRE--AGEKKAPEGSPPPLF
                                     :..  ..   ::   :  .. :  . ::: 
XP_005 PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLH
              40        50        60        70        80        90 

      30        40        50        60        70        80         
pF1KB9 PYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQ
       :   :::.:    .: : .  . .     :   . .    ::   : :  .::  :  ..
XP_005 P---PPPQA----APPAPQPPQPA-----PQPPAPTPAAPPPPSSASPPQNASNNPTPAN
                    100            110       120       130         

      90       100         110       120       130       140       
pF1KB9 YCHAPLGRQHSAVSPGVAHG--PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSS
         ..::       :: ::.   :    .     : .    . ..  : . :.:     ::
XP_005 AAKSPL-----LNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES--CAG-DKSPPGQASS
     140            150       160       170         180        190 

       150       160       170       180       190       200       
pF1KB9 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK
       :: :::.::.::.:::.::  : :: : ::.:.:. :::.:.:.::::::::.:.::. :
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK
             200       210       220       230       240       250 

       210       220       230       240       250       260       
pF1KB9 GSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP   
       :..   ..:: . . . .: :                                       
XP_005 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS
             260       270       280       290       300       310 




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:23:16 2016 done: Fri Nov  4 18:23:17 2016
 Total Scan time:  7.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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