Result of FASTA (omim) for pF1KB9691
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9691, 230 aa
  1>>>pF1KB9691 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2739+/-0.000319; mu= 11.6269+/- 0.020
 mean_var=136.0700+/-27.689, 0's: 0 Z-trim(120.1): 240  B-trim: 33 in 1/55
 Lambda= 0.109949
 statistics sampled from 34707 (35004) to 34707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.41), width:  16
 Scan time:  5.620

The best scores are:                                      opt bits E(85289)
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 1557 257.5 1.4e-68
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  806 138.4 9.4e-33
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  443 80.6 1.6e-15
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  443 80.8 2.1e-15
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  439 80.2 3.4e-15
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  436 79.7 4.5e-15
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  436 79.7 4.5e-15
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  436 79.7 4.5e-15
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  435 79.6 5.3e-15
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  436 79.8 5.3e-15
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270)  434 79.5 6.3e-15
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  431 79.0 8.8e-15
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  428 78.5 1.1e-14
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  428 78.5 1.1e-14
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289)  429 78.7 1.2e-14
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  425 78.0 1.5e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  410 75.2 4.7e-14
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290)  411 75.9 8.4e-14
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  400 74.1 2.6e-13
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  400 74.1 2.6e-13
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  391 72.6 6.3e-13
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  377 70.4 3.2e-12
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  378 70.7 3.4e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  376 70.2 3.6e-12
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352)  337 64.2 3.3e-10
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  319 61.4 2.7e-09
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  319 61.4 2.7e-09
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  305 59.0 9.8e-09
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  305 59.1 1.1e-08
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  305 59.1 1.1e-08
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  305 59.2 1.3e-08
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  305 59.2 1.3e-08
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 59.2 1.3e-08
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 59.2 1.3e-08
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 59.2 1.3e-08
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 59.2 1.3e-08
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  305 59.2 1.3e-08
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  305 59.3 1.4e-08
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  305 59.3 1.5e-08


>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo  (230 aa)
 initn: 1557 init1: 1557 opt: 1557  Z-score: 1352.5  bits: 257.5 E(85289): 1.4e-68
Smith-Waterman score: 1557; 99.6% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_008 MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
              130       140       150       160       170       180

              190       200       210       220       230
pF1KB9 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
              190       200       210       220       230

>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo  (217 aa)
 initn: 787 init1: 586 opt: 806  Z-score: 709.0  bits: 138.4 E(85289): 9.4e-33
Smith-Waterman score: 813; 58.4% identity (76.4% similar) in 233 aa overlap (1-224:1-217)

               10        20           30        40         50      
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNA---EPTSCSFAPNSQRSGYGAGAGA-FASTVPGLYN
       ::: ::.:.::::: :..:.: ..   : :::.:: : :: :::::.:: ::... ::: 
NP_004 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
               10        20        30        40        50        60

         60            70        80        90        100       110 
pF1KB9 VNSPLY-QSP---FASGYGLGADAYGNLPCASYDQNIPGLC-SDLAKGACDKTDEGALHG
        .. .  ::    .:.::::  ... :. :: ..::. :.: .: ::.:  : .. .   
NP_004 GGGGMAGQSAAGVYAAGYGLEPSSF-NMHCAPFEQNLSGVCPGDSAKAAGAKEQRDS-DL
               70        80         90       100       110         

             120       130       140       150       160       170 
pF1KB9 AAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE
       :::.:::::::::::: ::::::::::::::::::::::.::::::::::::::.:::::
NP_004 AAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTE
      120       130       140       150       160       170        

             180       190       200       210       220       230
pF1KB9 RQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
       :::::::::::::::::.:  ::              .:.. :.:. :...::      
NP_004 RQIKIWFQNRRMKWKKENKTAGP--------------GTTGQDRAEAEEEEEE      
      180       190       200                     210             

>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo  (153 aa)
 initn: 480 init1: 398 opt: 443  Z-score: 399.7  bits: 80.6 E(85289): 1.6e-15
Smith-Waterman score: 443; 57.3% identity (78.2% similar) in 124 aa overlap (114-229:35-153)

            90       100       110       120               130     
pF1KB9 SYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQ
                                     .:...:::::.        . : ::.::::
NP_710 CRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQ
           10        20        30        40        50        60    

         140       150       160       170       180       190     
pF1KB9 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPT
        :.::::::::::::::::::::::::::.::::::::::::::::::::::: .     
NP_710 IYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN-----
           70        80        90       100       110              

         200       210       220       230
pF1KB9 AAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
        ...  :.  .:.: . . : ..... :::...: 
NP_710 LTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 
     120       130       140       150    

>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo  (235 aa)
 initn: 504 init1: 398 opt: 443  Z-score: 397.4  bits: 80.8 E(85289): 2.1e-15
Smith-Waterman score: 477; 39.9% identity (65.0% similar) in 243 aa overlap (3-229:2-235)

               10         20        30        40         50        
pF1KB9 MSSSYYVNALFSKYTAG-TSLFQNAEPTSCSFAPNSQRSGYGAG-AGAFASTVPGLYNVN
         .::..:  .: . ::  ... :.  .: .. :  . : :::. :     ..: .:   
NP_004  MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP-FY---
                10        20        30        40        50         

       60        70           80          90       100       110   
pF1KB9 SPLYQSPFASGYG---LGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEGALHGAA
       ::  .  :.:. :    :.... .     ..  ::  :  .. . .   ....:      
NP_004 SPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQD
          60        70        80        90       100       110     

            120               130       140       150       160    
pF1KB9 E-ANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA
       . :...:::::.        . : ::.:::: :.::::::::::::::::::::::::::
NP_004 QKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIA
         120       130       140       150       160       170     

          170       180       190       200       210       220    
pF1KB9 HALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEE
       .:::::::::::::::::::::::      . ...  :.  .:.: . . : ..... ::
NP_004 NALCLTERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEE
         180       190            200       210       220       230

          230
pF1KB9 EEDEEE
       :...: 
NP_004 EKQKE 
             

>>XP_005257343 (OMIM: 142963) PREDICTED: homeobox protei  (242 aa)
 initn: 492 init1: 399 opt: 439  Z-score: 393.8  bits: 80.2 E(85289): 3.4e-15
Smith-Waterman score: 506; 43.3% identity (63.7% similar) in 245 aa overlap (3-224:2-242)

               10        20        30           40           50    
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPTSCSFAPN-SQRSG--YG-AGAGAFA--STVPGL
         :::.::.::::: .: ::  :    .:.:: . . :    :: ...:.:   : .  .
XP_005  MSSYFVNSLFSKYKTGESLRPNYY--DCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEF
                10        20          30        40        50       

                60         70        80        90        100       
pF1KB9 YNVNS-----PLYQSPFASG-YGLGADAYGNLPCASYDQNIPGLCS-DLAKGA-CDKTDE
       :.  :     :  :.: : . .:  .. ::  :     :.. :  . ::.. : :  .  
XP_005 YHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQR--QSLFGAQDPDLVQYADCKLAAA
        60        70        80        90         100       110     

        110             120       130       140       150       160
pF1KB9 GALHGAAEAN------FRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRR
       ..:   ::..       ...:::: ..  :.::::::.::::::::::: :: ::::.::
XP_005 SGLGEEAEGSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRR
         120       130       140       150       160       170     

              170       180        190       200       210         
pF1KB9 IEIAHALCLTERQIKIWFQNRRMKWKKEH-KDEGPTAAAAPEGAVPSAAATA--AADKAD
       ::..::: :::::.::::::::::::::. ::. :..    :    .    :  :::..:
XP_005 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGD
         180       190       200       210       220       230     

       220       230
pF1KB9 EEDDDEEEEDEEE
        .  :..      
XP_005 AQKGDKK      
         240        

>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 491 init1: 410 opt: 436  Z-score: 391.6  bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)

               10         20        30           40           50   
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
         :::.::. :    : :   : .  :   :   .  :   . :: : :   .::..   
XP_005  MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
                10        20        30        40        50         

            60        70         80                  90       100  
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
               :  : ..::: .:   ::  :         :: :  .. : .  .  :. : 
XP_005 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
                60        70        80        90       100         

              110       120               130       140       150  
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
        ::.  :  .   . .  .::::.        : ::. .:::::::::::::::::::.:
XP_005 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
     110        120       130       140       150       160        

            160       170       180       190       200       210  
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
       :::::::::::::::::::::::::::::::::::: :  . .  .: :           
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE    
      170       180       190       200       210       220        

            220       230
pF1KB9 ADKADEEDDDEEEEDEEE

>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo  (224 aa)
 initn: 491 init1: 410 opt: 436  Z-score: 391.6  bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)

               10         20        30           40           50   
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
         :::.::. :    : :   : .  :   :   .  :   . :: : :   .::..   
NP_061  MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
                10        20        30        40        50         

            60        70         80                  90       100  
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
               :  : ..::: .:   ::  :         :: :  .. : .  .  :. : 
NP_061 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
                60        70        80        90       100         

              110       120               130       140       150  
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
        ::.  :  .   . .  .::::.        : ::. .:::::::::::::::::::.:
NP_061 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
     110        120       130       140       150       160        

            160       170       180       190       200       210  
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
       :::::::::::::::::::::::::::::::::::: :  . .  .: :           
NP_061 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE    
      170       180       190       200       210       220        

            220       230
pF1KB9 ADKADEEDDDEEEEDEEE

>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 491 init1: 410 opt: 436  Z-score: 391.6  bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)

               10         20        30           40           50   
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
         :::.::. :    : :   : .  :   :   .  :   . :: : :   .::..   
XP_005  MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
                10        20        30        40        50         

            60        70         80                  90       100  
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
               :  : ..::: .:   ::  :         :: :  .. : .  .  :. : 
XP_005 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
                60        70        80        90       100         

              110       120               130       140       150  
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
        ::.  :  .   . .  .::::.        : ::. .:::::::::::::::::::.:
XP_005 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
     110        120       130       140       150       160        

            160       170       180       190       200       210  
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
       :::::::::::::::::::::::::::::::::::: :  . .  .: :           
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE    
      170       180       190       200       210       220        

            220       230
pF1KB9 ADKADEEDDDEEEEDEEE

>>NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [Homo  (242 aa)
 initn: 537 init1: 389 opt: 435  Z-score: 390.4  bits: 79.6 E(85289): 5.3e-15
Smith-Waterman score: 508; 42.5% identity (61.0% similar) in 259 aa overlap (3-230:2-236)

               10        20          30           40        50     
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPT--SCSFAPNSQRSG---YGAGAGAFASTVPGLY
         :::.:: ::::: :: ::    ::.  .: :  .  ::    :: :..:     ::. 
NP_073  MSSYFVNPLFSKYKAGESL----EPAYYDCRFPQSVGRSHALVYGPGGSA-----PGFQ
                10            20        30        40             50

          60        70         80                       90         
pF1KB9 NVNSPLYQSPFASGY-GLGADAYGNLPCA-----------SYD----QNIPGLCS-----
       .. :   :. :  :  :.. ..: . ::.           .:.    :.. :  .     
NP_073 HA-SHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVV
                60        70        80        90       100         

             100       110        120       130       140       150
pF1KB9 ---DLAKGACDKTDEGALHGAAEANFRI-YPWMRSSGPDRKRGRQTYTRYQTLELEKEFH
          :  ..:  ...::  :   ...  . .::::  .: :. :::::.::::::::::: 
NP_073 QYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFL
     110       120       130       140       150       160         

              160       170       180        190       200         
pF1KB9 FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH-KDEGPTAAAAPEGAVPSAAA
       :: ::::.::::..::: :::::.::::::::::::::. ::. :  .:  :        
NP_073 FNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP--GARDE--------
     170       180       190       200       210                   

     210       220       230      
pF1KB9 TAAADKADEEDDDEEEEDEEE      
           .:..:: ..:::..:::      
NP_073 ----EKVEEEGNEEEEKEEEEKEENKD
         220       230       240  

>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei  (288 aa)
 initn: 495 init1: 410 opt: 436  Z-score: 390.3  bits: 79.8 E(85289): 5.3e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:66-281)

                                           10         20        30 
pF1KB9                             MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSF
                                     :::.::. :    : :   : .  :   : 
XP_011 FNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSSG
          40        50        60        70        80        90     

                 40           50        60        70         80    
pF1KB9 APNSQR---SGYGAGAG---AFASTVPGLYNVNSPLYQSPFASGYGLGADA-YGNLP---
         .  :   . :: : :   .::..           :  : ..::: .:   ::  :   
XP_011 YADPLRHYPAPYGPGPGQDKGFATSS----------YYPPAGGGYGRAAPCDYGPAPAFY
         100       110       120                 130       140     

                     90       100         110       120            
pF1KB9 ------CA-SYDQNIPGLCSDLAKGAC--DKTDEGALHGAAEANFRIYPWMR--------
             :: :  .. : .  .  :. :  ::.  :  .   . .  .::::.        
XP_011 REKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETE-EQKCSTPVYPWMQRMNSCNSS
         150       160       170       180        190       200    

          130       140       150       160       170       180    
pF1KB9 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK
       : ::. .:::::::::::::::::::.:::::::::::::::::::::::::::::::::
XP_011 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK
          210       220       230       240       250       260    

          190       200       210       220       230
pF1KB9 WKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
       :::: :  . .  .: :                             
XP_011 WKKESKLLSASQLSAEEEEEKQAE                      
          270       280                              




230 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:21:38 2016 done: Fri Nov  4 18:21:39 2016
 Total Scan time:  5.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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