GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:56:38

Sequence gi568815578r:35853748_36054284 : 200537 bp : 44.61% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4555   4634   80  2  2   76   94    66 0.874   5.27
 1.02 Intr +   9266   9653  388  1  1   63  105   334 0.997  26.96
 1.03 Intr +  17208  17387  180  1  0   43  113   145 0.964  12.34
 1.04 Intr +  17903  18082  180  0  0  122   22    56 0.332   2.24
 1.05 Intr +  44607  44630   24  1  0   85  101    27 0.595   1.70
 1.06 Intr +  45623  45901  279  0  0   72  108   150 0.955  12.85
 1.07 Intr +  59502  59600   99  1  0   66   51   123 0.982   6.48
 1.08 Intr +  60286  60450  165  2  0   70   82    57 0.891   3.23
 1.09 Intr +  63737  63915  179  0  2   96   96   321 0.996  33.34
 1.10 Intr +  74033  74132  100  1  1   72   80    55 0.678   2.78
 1.11 Intr +  77502  77697  196  1  1   99   92   206 0.977  20.57
 1.12 Intr +  84950  85361  412  2  1   78   95   242 0.645  18.09
 1.13 Intr +  87117  87300  184  2  1   89   54   228 0.980  18.86
 1.14 Term +  93738  93880  143  1  2   90   47   177 0.995  11.89
 1.15 PlyA +  93948  93953    6                               1.05

 2.05 PlyA -  94246  94241    6                               1.05
 2.04 Term - 100592  99998  595  1  1   66   53   815 0.902  69.80
 2.03 Intr - 101071 100701  371  1  2   33  115   398 0.973  30.90
 2.02 Intr - 101355 101239  117  0  0   33   64    99 0.833   2.66
 2.01 Init - 106749 106744    6  0  0   82   76    10 0.736  -0.49
 2.00 Prom - 107506 107467   40                              -9.06

 3.00 Prom + 108102 108141   40                              -1.86
 3.01 Init + 115016 115066   51  1  0   99   81    39 0.918   5.47
 3.02 Intr + 118882 119019  138  0  0   93   69    92 0.984   8.46
 3.03 Intr + 122202 122255   54  2  0  131   69    30 0.954   4.58
 3.04 Intr + 126712 126875  164  0  2  120   73   259 0.756  26.37
 3.05 Intr + 130235 130391  157  2  1   36   86   138 0.594   8.41
 3.06 Intr + 130880 131031  152  1  2   84   61   202 0.973  16.06
 3.07 Intr + 133648 133786  139  1  1   63   62   129 0.914   8.27
 3.08 Intr + 141291 141405  115  2  1   97   91    85 0.997   9.72
 3.09 Intr + 154550 154727  178  0  1   81   74    17 0.029  -1.42
 3.10 Intr + 157390 157510  121  1  1   41   97   148 0.269  11.50
 3.11 Intr + 169855 170024  170  0  2   41   82    83 0.032   1.74
 3.12 Term + 176610 176901  292  0  1   65   36   320 0.925  19.32
 3.13 PlyA + 176933 176938    6                               1.05

 4.05 PlyA - 178180 178175    6                               1.05
 4.04 Term - 181128 181032   97  2  1   90   37    48 0.133  -2.66
 4.03 Intr - 187726 187495  232  2  1   71   85   150 0.049   9.83
 4.02 Intr - 190178 190138   41  1  2  110   55    45 0.023   1.27
 4.01 Intr - 196739 196633  107  2  2   53  105    69 0.012   4.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:35853748_36054284|GENSCAN_predicted_peptide_1|869_aa
XTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRKAT
VNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDREYSG
DAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAQEKSKNYSENTDKDLSRRRSSRL
STNGTHEILDPDLVVSDLVDTDPLQDTLSSTKESEEGQLKSALEAGQVSSALTCHSFGDG
SGAAGLELNCPSMGENTMKTEPTSPLVELQEISTVEDRYQDGSKLTNTFKKTDDFGSSNA
PAVDLDHKFRCKVVDCLKFFRKAKLLHYHMKYFHGMEKSLEPEESPGKRHVQTRGPSASD
KPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEISD
TSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEEDNLSESSSESFLW
SDDEYGQDVDVTTNPDEELDGDDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGL
LEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEENYSHQNAKKIVATH
QLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLWCQPWKQHSGEGRSHFRNIPVTDTRSK
EEAPSYRTLNGAVEKPRPLALPLPRSVEESYITSEHCYQKPRAYYPAVEQKLVVETRGSA
LDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYVSKKALPEEAPARKL
LDRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPL
ARLPQLKHCIKQLLMDLGKVQQIALCCST

>gi568815578r:35853748_36054284|GENSCAN_predicted_CDS_1|2610_bp
ngtacttacactgtgaaattttatgatggagtagttcagactgtcaaacatattcatgtc
aaagctttttccaaagatcagaatattgtgggtaatgctaggcctaaagaaacagatcac
aaaagtctttcatcatctcctgataaacgagagaagtttaaagaacagagaaaagcaaca
gtgaatgtgaagaaagacaaagaagataaacccttaaagacagaaaagcgacccaagcag
cctgataaagaaggaaagttaatctgttctgaaaaggggaaagtgtcagagaaaagtctt
cccaagaacgagaaggaagacaaggaaaacatttccgaaaatgacagagagtattctgga
gatgcccaagtggataagaaacctgaaaatgacattgtgaagagtccacaagaaaacttg
agggaacccaaaagaaaacgaggcagacccccttccatagctcctactgcccaggaaaag
tcaaaaaactactcggaaaacactgacaaagacttatcgaggagacgttcctccaggctg
tccactaatgggacccatgagatcctagatcctgacttggttgtatcagatttggttgat
acggatcctttgcaagacacgttgtctagtaccaaggaatctgaagaaggtcagttgaag
tctgctttggaagctggccaggtctcatctgcactgacttgccactcctttggggatgga
tccggggctgcaggcttggagttgaactgcccatcaatgggagaaaacacgatgaaaaca
gaaccgacttctccccttgtggaattacaagagatttcgactgtggaagataggtaccag
gatggtagtaaattaacaaatacttttaagaaaacagatgattttgggtcatctaatgca
ccagctgtcgacctagaccataagtttagatgcaaagttgtggactgtttaaaatttttc
cgcaaagccaaactgttgcactatcacatgaagtatttccatggaatggagaagtcactg
gagccagaagagagcccgggaaagaggcatgtccaaaccaggggcccttcagcttcagac
aagcccagccaggagaccctgaccaggaagcgggtctctgccagttccccaactacaaaa
gacaaggaaaagaataaagagaagaaattcaaggagtttgtgagagtgaagccaaagaag
aaaaagaaaaagaaaaagaaaaccaaacctgaatgcccctgcagtgaggagatcagtgac
acctcccaggaaccttctccacccaaggcatttgctgttaccaggtgtgggtcctcacac
aagccaggggtccatatgagcccgcagcttcatggcccagaatctggacaccacaaaggg
aaagtgaaagcattggaggaggataatttgagtgagtcctcttctgagagctttctctgg
agtgatgatgagtatggccaagatgtggatgtgaccaccaacccagatgaggaacttgat
ggggatgaccgctatgacttcgaggtggtccgctgcatctgtgaggtccaggaggaaaat
gacttcatgattcagtgtgaagagtgccagtgctggcagcatggggtctgcatgggatta
ctggaagaaaatgtgcccgagaaatacacctgttatgtttgccaagaccctccaggtcag
aggcctggcttcaagtactggtatgacaaggagtggctgagcaggggacatatgcatggc
ctggcatttctagaagagaactactcccatcagaatgccaagaagatcgtggccacccac
cagcttcttggtgatgtgcagagagtgattgaggttctgcatggcctgcagctcaagatg
agcatcttgcaaagccgggagcatcctgatctgccgctgtggtgccagccttggaaacag
cactcaggggaggggagatctcatttcagaaacatccctgtcactgacaccaggagcaag
gaggaagctccaagctatagaactttgaacggggcagtggagaagcccaggcccctggcc
ctgcccctgccgcgttctgtggaggaatcctatatcaccagtgagcattgctaccagaag
ccccgcgcctattaccctgccgtggagcagaagctggtggtggagacgaggggctctgcc
ctcgacgatgcggtcaaccccctccatgagaacggcgatgattccctttccccgcgcctg
ggctggcctctagaccaagacaggagcaagggggacagtgaccccaaacccggctcccca
aaggtgaaggaatatgtctccaaaaaggccctaccagaagaagcccctgctcggaagctg
ctggacagaggtggagaggggctgctgagctcccagcaccagtggcagtttaacctgctg
acccatgtggaatctcttcaggatgaagttacgcacaggatggactccattgagaaggag
ttggatgtgttggagagctggctggactacactggggaactggagccccctgagccgctg
gccaggcttccgcagctcaagcattgtatcaagcagctgctgatggacctgggcaaggtg
cagcagatcgccctctgctgctcaacatga

>gi568815578r:35853748_36054284|GENSCAN_predicted_peptide_2|362_aa
MANPQSRISLGFGGHAKNNNSKGFSSISFAPDGVLYFVIVAEGPSELQLIRVNQKGRPHA
KVTCKPKRRTDKVRDLKSISKHSGSSSDSSSNWRSEAPPFGRSPGHAQLALPHREGSSRL
MRLENARGRRFREPASGFRVLARRPGRREARDFRFRLPQALRWCRRSAEHTATGQRVTPG
AGVMAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAV
PEAIPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQ
DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRI
TG

>gi568815578r:35853748_36054284|GENSCAN_predicted_CDS_2|1089_bp
atggcgaacccacagagccgcatttcccttggtttcggaggacacgcgaaaaataacaac
agcaaagggttctcgagcatctccttcgcgccagacggtgtgttgtactttgtcatcgtc
gcagaggggccatcagagctacagctcatcagggtcaatcagaaggggcgcccgcacgca
aaggtcacctgcaaaccgaagcggcgcacggataaggtccgggacttgaagtctatctcc
aaacattcaggctcctcctccgactcctcctcgaactggcgctcagaggcgccaccattc
ggaaggagcccaggccacgcgcagctcgccctcccgcaccgcgagggcagcagccgcctc
atgcgactcgagaacgctagagggcgccgcttccgggagcccgcaagcggcttccgggtg
ctcgcgcgccgacctggacgcagagaagccagagactttcgcttccggctgccgcaggcg
cttcgctggtgcagacgcagtgctgagcacacagctaccggacaaagagtgacgcccgga
gctggagttatggcggctacggagccgatcttggcggccactgggagtcccgcggcggtg
ccaccggagaaactggaaggagccggttcgagctcagcccctgagcgtaactgtgtgggc
tcctcgctgccagaggcctcaccgcctgcccctgagccttccagtcccaacgccgcggtc
cctgaagccatccctacgccccgagctgcggcctccgcggccctggagctgcctctcggg
cccgcacccgtgagcgtagcgcctcaggccgaagctgaagcgcgctccacaccaggcccc
gccggctctagactcggtcccgagacgttccgccagcgtttccggcagttccgctaccag
gatgcggcgggtccccgggaggctttccggcagctgcgggagctgtcccgccagtggctg
cggcctgacatccgcaccaaggagcagatcgtggagatgctggtgcaagagcagctgctc
gccatcctgcccgaggcggctcgggcccggcggatccgccgccgcacggatgtgcgcatc
actggctga

>gi568815578r:35853748_36054284|GENSCAN_predicted_peptide_3|576_aa
MRRHMVTYAWQLLKKELGLYQLAMDIIIMIRVCKMFRQGLRGFREYQIIETAHWKHPIFS
FWDKKMQSRVTFDTMDFIAEEGHFPPKAIQIMQKKPSWRTEDEIQAVCNILQVLDSYRNY
AEPLQLLLAKVMRFERFGRRRVIIKKGQKGNSFYFIYLGTVAITKDEDGSSAFLDPHPKL
LHKGSCFGEMDVLHASVRRSTIVCMEETEFLVVDREDFFANKLDQEVQKDAQYRFEFFRK
MELFASWSDEKLWQLVAMAKIERFSYGQLISKDFGESPFIMFISKGSCEVLRLLDLGASP
SYRRWIWQHLELIDGRPLKTHLSEYSPMERFKEFQIKSYPLQDFSSLKLPHLKKAWGLQG
TSFSRKIRTSGDTLPKMLGPKIQSRPAQSIKCAMINIKPGELPKEAAVGAYVKVHTVEQG
EILGLHQAFLPEGECDTRPLILMSLGNELIRIRKEIFYELIDNDDEMIKKLLKLNIAFPS
DEDMCQKFLQQNSWNIFRKDLLQLLVEPCQSQLFTPNRPKKREIYNPKSVVLDLCSINKT
TKPRYPIFMAPQKYLPPLRIVQAIKAPRYKIRELLA

>gi568815578r:35853748_36054284|GENSCAN_predicted_CDS_3|1731_bp
atgaggagacatatggtaacttatgcctggcagctcctgaagaaggaactgggactgtac
cagctcgccatggatatcatcataatgatccgagtgtgtaaaatgttccgccaaggcctc
aggggattccgggaatatcaaatcattgagactgctcactggaagcaccctatcttctcc
ttctgggataaaaagatgcaaagccgagtcacatttgataccatggacttcattgcagag
gagggtcactttcctccaaaggccattcagatcatgcagaagaagccttcctggagaaca
gaggatgagatccaggccgtctgtaacatcttgcaggttctggatagctatcggaactac
gcagagcccctgcagctgctcctggccaaagtcatgcgctttgaacggtttggtcgcagg
cgtgtgatcatcaagaaggggcagaagggcaacagcttttatttcatctacctgggcaca
gttgcaataaccaaggacgaggatggcagcagtgccttcctagatccccacccgaaattg
ctgcacaagggtagctgttttggggaaatggacgttctgcatgcttcagtgaggaggtcc
accatcgtctgtatggaagaaacggagttcctggttgttgaccgggaggacttctttgct
aataagctggaccaggaagttcagaaggatgctcagtatcggtttgaattttttaggaag
atggagctgtttgcatcatggtctgatgagaagctctggcagctggtagccatggcgaag
atagagaggttctcgtatgggcagctgatctcaaaagattttggagagtcacccttcatc
atgtttatcagcaagggcagctgtgaagtcctgcggctgttggaccttggggcctcccct
tcctaccgtagatggatctggcagcacctggagctgatagatggcagacctctgaagacc
cacctgagtgaatactctcctatggaaagatttaaggaattccagatcaaatcatatcct
ctgcaagactttagctccttgaaacttccacatctcaaaaaagcctgggggctacagggg
acaagcttcagcaggaagatcagaacctcaggagacactctccccaagatgctgggcccg
aagatccaatccaggcctgctcagtcgatcaaatgtgccatgatcaatatcaagcctggt
gagctccccaaggaggctgcagtgggggcctacgtgaaggtgcacactgtggagcaggga
gaaattttgggtcttcaccaggccttccttccagagggtgaatgcgacacacgacccttg
atcctgatgagcctgggaaatgagttgatacggataaggaaggaaatattttatgaactg
attgacaatgatgacgagatgataaaaaagttgttaaagctcaatattgcattccccagt
gatgaagatatgtgccagaagttcctccagcagaacagctggaatatctttcggaaggac
ctgttgcagctgctcgtggagccttgccaaagtcaactgttcactccaaaccggcccaag
aagagagagatctacaaccctaagtctgtggtcctggatttgtgcagcatcaacaagacg
actaaacctcgttatcctatttttatggcaccccagaaatacctccccccattgaggatt
gtccaagccatcaaagcacctcggtacaaaatccgagaactcttggcttag

>gi568815578r:35853748_36054284|GENSCAN_predicted_peptide_4|158_aa
ATEPRRSGSRVTTLSPLGETYLVLTTTDKGLKGPGRSDAGPFKAMSFIGGFRFSDASSPR
PPCFMEMPRSLKVRGLRWTEDKRCLEGGEQVAANGLQDASRRGGKPHELMIIEADEDVDN
GAMCECCTPPTQCLVWFAALSPLSPERLPVHVPMSSFT

>gi568815578r:35853748_36054284|GENSCAN_predicted_CDS_4|477_bp
gccacggagccgcgcagatccggttcccgggtgaccactctgtcgccattgggcgagacc
tacctagtcctgacgacaacggacaaaggccttaaggggcctggaagatcagatgctggg
cctttcaaagccatgagtttcatcgggggttttagattcagtgatgccagctctcctagg
cctccctgtttcatggagatgcccaggagcctgaaggtgaggggactgagatggacagaa
gacaagcgctgtttggagggaggggagcaggtagcagccaatgggctccaggatgcttct
cgcagagggggcaaaccccatgagctgatgatcatcgaagctgatgaggatgtggataat
ggagcaatgtgtgaatgctgtaccccccccacacagtgcttggtatggtttgctgccctg
tctccactctcccctgagaggctgcccgttcatgttcccatgagctccttcacctag