Result of FASTA (ccds) for pF1KB9637
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9637, 411 aa
  1>>>pF1KB9637 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5375+/- 0.001; mu= -14.3141+/- 0.059
 mean_var=645.0388+/-163.426, 0's: 0 Z-trim(116.2): 49  B-trim: 0 in 0/53
 Lambda= 0.050499
 statistics sampled from 16720 (16753) to 16720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.515), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS5203.1 PLAGL1 gene_id:5325|Hs108|chr6          ( 411) 2862 223.2 3.5e-58
CCDS5202.1 PLAGL1 gene_id:5325|Hs108|chr6          ( 463) 2862 223.3 3.8e-58
CCDS13197.1 PLAGL2 gene_id:5326|Hs108|chr20        ( 496) 1096 94.7 2.1e-19
CCDS47860.1 PLAG1 gene_id:5324|Hs108|chr8          ( 418) 1028 89.6 5.9e-18
CCDS6165.1 PLAG1 gene_id:5324|Hs108|chr8           ( 500) 1028 89.7 6.7e-18


>>CCDS5203.1 PLAGL1 gene_id:5325|Hs108|chr6               (411 aa)
 initn: 2862 init1: 2862 opt: 2862  Z-score: 1158.0  bits: 223.2 E(32554): 3.5e-58
Smith-Waterman score: 2862; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB9 MATHSPQKSHQCAHCEKTFNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MATHSPQKSHQCAHCEKTFNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 HAASSGDLTCGVCALELGSTEVLLDHLKAHAEEKPPSGTKEKKHQCDHCERCFYTRKDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 HAASSGDLTCGVCALELGSTEVLLDHLKAHAEEKPPSGTKEKKHQCDHCERCFYTRKDVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQELMKESLQTGDLLSTFHTISPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 RHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQELMKESLQTGDLLSTFHTISPSF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QLKAAALPPFPLGASAQNGLASSLPAEVHSLTLSPPEQAAQPMQPLPESLASLHPSVSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QLKAAALPPFPLGASAQNGLASSLPAEVHSLTLSPPEQAAQPMQPLPESLASLHPSVSPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SPPPPLPNHKYNTTSTSYSPLASLPLKADTKGFCNISLFEDLPLQEPQSPQKLNPGFDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SPPPPLPNHKYNTTSTSYSPLASLPLKADTKGFCNISLFEDLPLQEPQSPQKLNPGFDLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KGNAGKVNLPKELPADAVNLTIPASLDLSPLLGFWQLPPPATQNTFGNSTLALGPGESLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KGNAGKVNLPKELPADAVNLTIPASLDLSPLLGFWQLPPPATQNTFGNSTLALGPGESLP
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB9 HRLSCLGQQQQEPPLAMGTVSLGQLPLPPIPHVFSAGTGSAILPHFHHAFR
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 HRLSCLGQQQQEPPLAMGTVSLGQLPLPPIPHVFSAGTGSAILPHFHHAFR
              370       380       390       400       410 

>>CCDS5202.1 PLAGL1 gene_id:5325|Hs108|chr6               (463 aa)
 initn: 2862 init1: 2862 opt: 2862  Z-score: 1157.4  bits: 223.3 E(32554): 3.8e-58
Smith-Waterman score: 2862; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:53-463)

                                             10        20        30
pF1KB9                               MATHSPQKSHQCAHCEKTFNRKDHLKNHLQ
                                     ::::::::::::::::::::::::::::::
CCDS52 NYSHSRERPYKCVQPDCGKAFVSRYKLMRHMATHSPQKSHQCAHCEKTFNRKDHLKNHLQ
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KB9 THDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLKAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 THDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLKAH
             90       100       110       120       130       140  

              100       110       120       130       140       150
pF1KB9 AEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 AEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRH
            150       160       170       180       190       200  

              160       170       180       190       200       210
pF1KB9 TKKTHSQELMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 TKKTHSQELMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHS
            210       220       230       240       250       260  

              220       230       240       250       260       270
pF1KB9 LTLSPPEQAAQPMQPLPESLASLHPSVSPGSPPPPLPNHKYNTTSTSYSPLASLPLKADT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LTLSPPEQAAQPMQPLPESLASLHPSVSPGSPPPPLPNHKYNTTSTSYSPLASLPLKADT
            270       280       290       300       310       320  

              280       290       300       310       320       330
pF1KB9 KGFCNISLFEDLPLQEPQSPQKLNPGFDLAKGNAGKVNLPKELPADAVNLTIPASLDLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KGFCNISLFEDLPLQEPQSPQKLNPGFDLAKGNAGKVNLPKELPADAVNLTIPASLDLSP
            330       340       350       360       370       380  

              340       350       360       370       380       390
pF1KB9 LLGFWQLPPPATQNTFGNSTLALGPGESLPHRLSCLGQQQQEPPLAMGTVSLGQLPLPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LLGFWQLPPPATQNTFGNSTLALGPGESLPHRLSCLGQQQQEPPLAMGTVSLGQLPLPPI
            390       400       410       420       430       440  

              400       410 
pF1KB9 PHVFSAGTGSAILPHFHHAFR
       :::::::::::::::::::::
CCDS52 PHVFSAGTGSAILPHFHHAFR
            450       460   

>>CCDS13197.1 PLAGL2 gene_id:5326|Hs108|chr20             (496 aa)
 initn: 588 init1: 473 opt: 1096  Z-score: 461.7  bits: 94.7 E(32554): 2.1e-19
Smith-Waterman score: 1096; 46.1% identity (68.2% similar) in 421 aa overlap (1-411:89-496)

                                             10        20        30
pF1KB9                               MATHSPQKSHQCAHCEKTFNRKDHLKNHLQ
                                     ::::: :: ::: .:.: :.:::::.::::
CCDS13 SLPQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQ
       60        70        80        90       100       110        

               40        50        60        70        80        90
pF1KB9 THDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLKAH
       :::::: :. : ::::.::: :::.::::.::::::::.: ::   . ::..::.:::::
CCDS13 THDPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAH
      120       130       140       150       160       170        

              100       110       120       130       140       150
pF1KB9 AEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRH
       .. .  .:.::::: ::::.: :::::::::::::::: ::::::.::::::::::::::
CCDS13 SR-RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRH
      180        190       200       210       220       230       

              160       170       180       190       200       210
pF1KB9 TKKTHSQELMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHS
       .::.:::::.: . .  :.:. . . : . ..:    : . ...    : ....:. .  
CCDS13 VKKSHSQELLKIKTEPVDMLGLL-SCSSTVSVKEELSPVLCMASRDVMG-TKAFPGML-P
       240       250       260        270       280        290     

              220       230               240       250       260  
pF1KB9 LTLSPPEQAAQPMQPLPESLA--SL-----HP-SVSPGSPPPPLPNHKYNTTSTSYSPLA
       . .   .  ..:   .:.::.  .:     .:   :: : :  ::  ::.  :::: :  
CCDS13 MGMYGAHIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPP-KYQLGSTSYLP-D
          300       310       320       330       340        350   

            270       280       290       300       310       320  
pF1KB9 SLPLKADTKGFCNISLFEDLPLQEPQSPQKLNPGFDLAKGNAGKVNLPKELPADAVNLTI
       .:: :... .:    :  .: :.  . ::  .:    : .   .. : :  ::.  .   
CCDS13 KLP-KVEVDSFLA-ELPGSLSLSSAE-PQPASPQPAAAAALLDEALLAKS-PANLSEALC
             360        370        380       390        400        

            330         340       350       360       370       380
pF1KB9 PASLDLSPLLGFW--QLPPPATQNTFGNSTLALGPGESLPHRLSCLGQQQQEPPLAMGTV
        :..:.: ::::   .:::    .. :. ... . .:. :  :. :  : :. : : : .
CCDS13 AANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPL-LTTLQAQPQDSPGAGGPL
      410       420       430       440        450       460       

              390       400       410 
pF1KB9 SLGQLPLPPIPHVFSAGTGSAILPHFHHAFR
       ..:  ::  .: ::..: .:. ::.::.::.
CCDS13 NFG--PLHSLPPVFTSGLSSTTLPRFHQAFQ
       470         480       490      

>>CCDS47860.1 PLAG1 gene_id:5324|Hs108|chr8               (418 aa)
 initn: 957 init1: 487 opt: 1028  Z-score: 435.8  bits: 89.6 E(32554): 5.9e-18
Smith-Waterman score: 1041; 44.3% identity (66.5% similar) in 427 aa overlap (1-411:1-418)

               10        20        30        40        50        60
pF1KB9 MATHSPQKSHQCAHCEKTFNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLAL
       ::::::.:.:.: .::: :.:::::::::.:::::: .: ::::::.::: ::.::::::
CCDS47 MATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHDPNKETFKCEECGKNYNTKLGFKRHLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 HAASSGDLTCGVCALELGSTEVLLDHLKAHAEEKPPSGTKEKKHQCDHCERCFYTRKDVR
       :::.:::::: ::   . :: :::.:::.::  :  .:.:::::::.::.: ::::::::
CCDS47 HAATSGDLTCKVCLQTFESTGVLLEHLKSHAG-KSSGGVKEKKHQCEHCDRRFYTRKDVR
               70        80        90        100       110         

              130       140       150       160       170       180
pF1KB9 RHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQELMKESLQTGDLLSTFHTISPSF
       ::.::::: ::::::.:::::::::::::: ::.:.:::.: . .  :.:. : : . : 
CCDS47 RHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPF-TCNVSV
     120       130       140       150       160       170         

              190       200       210       220       230          
pF1KB9 QLKAAALPPFPLGASAQNGLASSLPAEVHSLTLSPPEQAAQPMQPLPESLASLHPSVS-P
        .:   :: . : .:    :.. .   ..    . : :. :      . ...:  ... :
CCDS47 PIKDELLPVMSLPSSEL--LSKPFTNTLQLNLYNTPFQSMQSSGSAHQMITTLPLGMTCP
      180       190         200       210       220       230      

     240           250          260       270       280         290
pF1KB9 GSPPPPLPNH----KYNTTSTSYS---PLASLPLKADTKGFCNISLFEDLPL--QEPQSP
        .     :.:    ::  .::::.   :    :::.. ...  . :   .:   :. :. 
CCDS47 IDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQPLKGEIESYL-MELQGGVPSSSQDSQAS
        240       250       260       270        280       290     

              300           310       320       330       340      
pF1KB9 QKLNPGFDLAKGN----AGKVNLPKELPADAVNLTIPASLDLSPLLGFWQLPPPATQNTF
       .. . :.:   :.    :: ..: :   . .  :. :: ::.: :..:  :  :   : .
CCDS47 SSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLNTPA-LDFSQLFNFIPLNGPP-YNPL
         300       310       320       330        340        350   

        350       360        370       380       390        400    
pF1KB9 GNSTLALGPGESLPHR-LSCLGQQQQEPPLAMGTVSLGQLPLPPIPHVFSAG-TGSAILP
       . ..:... ..   :  .: :  : :.     .:..::.:    .  .:... . :. ::
CCDS47 SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIGLGSLH--SLSAAFTSSLSTSTTLP
           360       370       380       390         400       410 

          410 
pF1KB9 HFHHAFR
       .::.::.
CCDS47 RFHQAFQ
              

>>CCDS6165.1 PLAG1 gene_id:5324|Hs108|chr8                (500 aa)
 initn: 957 init1: 487 opt: 1028  Z-score: 434.9  bits: 89.7 E(32554): 6.7e-18
Smith-Waterman score: 1041; 44.3% identity (66.5% similar) in 427 aa overlap (1-411:83-500)

                                             10        20        30
pF1KB9                               MATHSPQKSHQCAHCEKTFNRKDHLKNHLQ
                                     ::::::.:.:.: .::: :.:::::::::.
CCDS61 SYSHTGERPYKCIQQDCTKAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLH
             60        70        80        90       100       110  

               40        50        60        70        80        90
pF1KB9 THDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLKAH
       :::::: .: ::::::.::: ::.:::::::::.:::::: ::   . :: :::.:::.:
CCDS61 THDPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSH
            120       130       140       150       160       170  

              100       110       120       130       140       150
pF1KB9 AEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRH
       :  :  .:.:::::::.::.: ::::::::::.::::: ::::::.::::::::::::::
CCDS61 AG-KSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRH
             180       190       200       210       220       230 

              160       170       180       190       200       210
pF1KB9 TKKTHSQELMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHS
        ::.:.:::.: . .  :.:. : : . :  .:   :: . : .:    :.. .   .. 
CCDS61 MKKSHNQELLKVKTEPVDFLDPF-TCNVSVPIKDELLPVMSLPSSEL--LSKPFTNTLQL
             240       250        260       270         280        

              220       230        240           250          260  
pF1KB9 LTLSPPEQAAQPMQPLPESLASLHPSVS-PGSPPPPLPNH----KYNTTSTSYS---PLA
          . : :. :      . ...:  ... : .     :.:    ::  .::::.   :  
CCDS61 NLYNTPFQSMQSSGSAHQMITTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEK
      290       300       310       320       330       340        

            270       280         290       300           310      
pF1KB9 SLPLKADTKGFCNISLFEDLPL--QEPQSPQKLNPGFDLAKGN----AGKVNLPKELPAD
         :::.. ...  . :   .:   :. :. .. . :.:   :.    :: ..: :   . 
CCDS61 EQPLKGEIESYL-MELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISI
      350       360        370       380       390       400       

        320       330       340       350       360        370     
pF1KB9 AVNLTIPASLDLSPLLGFWQLPPPATQNTFGNSTLALGPGESLPHR-LSCLGQQQQEPPL
       .  :. :: ::.: :..:  :  :   : .. ..:... ..   :  .: :  : :.   
CCDS61 SDPLNTPA-LDFSQLFNFIPLNGPP-YNPLSVGSLGMSYSQEEAHSSVSQLPPQTQDLQD
       410        420       430        440       450       460     

         380       390        400       410 
pF1KB9 AMGTVSLGQLPLPPIPHVFSAG-TGSAILPHFHHAFR
         .:..::.:    .  .:... . :. ::.::.::.
CCDS61 PANTIGLGSLH--SLSAAFTSSLSTSTTLPRFHQAFQ
         470         480       490       500




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:54:26 2016 done: Fri Nov  4 17:54:26 2016
 Total Scan time:  3.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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